|  Help  |  About  |  Contact Us

Search our database by keyword

Examples

  • Search this entire website. Enter identifiers, names or keywords for genes, diseases, strains, ontology terms, etc. (e.g. Pax6, Parkinson, ataxia)
  • Use OR to search for either of two terms (e.g. OR mus) or quotation marks to search for phrases (e.g. "dna binding").
  • Boolean search syntax is supported: e.g. Balb* for partial matches or mus AND NOT embryo to exclude a term

Search results 201 to 275 out of 275 for Rai1

<< First    < Previous  |  Next >    Last >>
0.042s

Categories

Hits by Strain

Hits by Category

Type Details Score
GXD Expression
GXD Expression
 
Probe: MGI:6306286
Assay Type: Immunohistochemistry
Annotation Date: 2019-05-30
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689428
Pattern: Regionally restricted
Stage: TS28
Assay Id: MGI:6306296
Age: postnatal adult
Note: Expression is in the cytosol and neurites of the neurons.
Specimen Label: 8G
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:5002213
Assay Type: RNA in situ
Annotation Date: 2014-02-07
Strength: Present
Sex: Female
Emaps: EMAPS:1796223
Pattern: Not Specified
Stage: TS23
Assay Id: MGI:5542767
Age: embryonic day 15.5
Image: GUDMAP:11143
Specimen Label: GUDMAP:11143
Detected: true
Specimen Num: 2
•
•
•
•
•
GXD Expression
GXD Expression
   
Assay Type: In situ reporter (knock in)
Annotation Date: 2006-11-15
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1668017
Pattern: Regionally restricted
Stage: TS17
Assay Id: MGI:3687569
Age: embryonic day 10.5
Note: Expression is in the epithelium.
Specimen Label: 2E
Detected: true
Specimen Num: 5
•
•
•
•
•
GXD Expression
GXD Expression
     
Assay Type: In situ reporter (knock in)
Annotation Date: 2013-12-11
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1881228
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:5523464
Age: postnatal adult
Specimen Label: not shown
Detected: true
Specimen Num: 23
•
•
•
•
•
GXD Expression
GXD Expression
     
Assay Type: In situ reporter (knock in)
Annotation Date: 2013-12-11
Strength: Present
Sex: Female
Emaps: EMAPS:3562728
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:5523464
Age: postnatal adult
Specimen Label: 2F
Detected: true
Specimen Num: 14
•
•
•
•
•
Publication
23345394 | J:198061
First Author: Savino MT
Year: 2013
Journal: J Leukoc Biol
Title: The Shc family protein adaptor, Rai, acts as a negative regulator of Th17 and Th1 cell development.
Volume: 93
Issue: 4
Pages: 549-59
•
•
•
•
•
Publication
35074918 | J:323645
 
First Author: Zhou J
Year: 2022
Journal: Proc Natl Acad Sci U S A
Title: Disruption of MeCP2-TCF20 complex underlies distinct neurodevelopmental disorders.
Volume: 119
Issue: 4
•
•
•
•
•
Publication
21124890 | J:170239
First Author: Ricard G
Year: 2010
Journal: PLoS Biol
Title: Phenotypic consequences of copy number variation: insights from Smith-Magenis and Potocki-Lupski syndrome mouse models.
Volume: 8
Issue: 11
Pages: e1000543
•
•
•
•
•
Publication
32027825 | J:284925
     
First Author: Luo L
Year: 2020
Journal: Neuron
Title: Optimizing Nervous System-Specific Gene Targeting with Cre Driver Lines: Prevalence of Germline Recombination and Influencing Factors.
•
•
•
•
•
Publication
- | J:157064
     
First Author: University of California, Davis
Year: 2010
Journal: MGI Direct Data Submission
Title: Alleles produced for the KOMP project by the University of California, Davis
•
•
•
•
•
Publication
12904583 | J:85162
First Author: Hansen J
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome.
Volume: 100
Issue: 17
Pages: 9918-22
•
•
•
•
•
Publication
24952961 | J:215487
First Author: Thompson CL
Year: 2014
Journal: Neuron
Title: A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain.
Volume: 83
Issue: 2
Pages: 309-323
•
•
•
•
•
Publication
- | J:171409
     
First Author: GUDMAP Consortium
Year: 2004
Journal: www.gudmap.org
Title: GUDMAP: the GenitoUrinary Development Molecular Anatomy Project
•
•
•
•
•
Publication
- | J:157065
     
First Author: Helmholtz Zentrum Muenchen GmbH
Year: 2010
Journal: MGI Direct Data Submission
Title: Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu)
•
•
•
•
•
Publication
18799693 | J:142754
First Author: Hansen GM
Year: 2008
Journal: Genome Res
Title: Large-scale gene trapping in C57BL/6N mouse embryonic stem cells.
Volume: 18
Issue: 10
Pages: 1670-9
•
•
•
•
•
Publication
- | J:342605
       
First Author: GOA curators
Year: 2016
Title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
•
•
•
•
•
Publication
- | J:342604
       
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
•
•
•
•
•
Publication
16602821 | J:162220
First Author: Magdaleno S
Year: 2006
Journal: PLoS Biol
Title: BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system.
Volume: 4
Issue: 4
Pages: e86
•
•
•
•
•
Publication
- | J:78475
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Chromosome assignment of mouse genes using the Mouse Genome Sequencing Consortium (MGSC) assembly and the ENSEMBL Database
•
•
•
•
•
Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
•
•
•
•
•
Publication
11217851 | J:65060
First Author: Kawai J
Year: 2001
Journal: Nature
Title: Functional annotation of a full-length mouse cDNA collection.
Volume: 409
Issue: 6821
Pages: 685-90
•
•
•
•
•
Publication
14610273 | J:86696
First Author: Zambrowicz BP
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
Volume: 100
Issue: 24
Pages: 14109-14
•
•
•
•
•
Publication
- | J:141210
     
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
•
•
•
•
•
Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
•
•
•
•
•
Publication
- | J:60000
       
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
•
•
•
•
•
Publication
- | J:342587
       
First Author: AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators
Year: 2011
Title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
•
•
•
•
•
Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
•
•
•
•
•
Publication
- | J:164563
       
First Author: The Gene Ontology Consortium
Year: 2010
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
•
•
•
•
•
Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
•
•
•
•
•
Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
•
•
•
•
•
Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
•
•
•
•
•
Publication
- | J:57747
     
First Author: MGI Genome Annotation Group and UniGene Staff
Year: 2015
Journal: Database Download
Title: MGI-UniGene Interconnection Effort
•
•
•
•
•
Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
•
•
•
•
•
Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
•
•
•
•
•
Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
•
•
•
•
•
Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
•
•
•
•
•
Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
•
•
•
•
•
Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
•
•
•
•
•
Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
•
•
•
•
•
Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
•
•
•
•
•
Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
•
•
•
•
•
Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
•
•
•
•
•
Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
•
•
•
•
•
HT Experiment
GSE81206 | RNA-Sequencing to identify the transcriptional targets of Rai1
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
•
•
•
•
•
Strain
MGI:4461459 | B6.Cg-Tg(RP23-326M22)760She/Mmmh
Attribute String: congenic, mutant strain, transgenic
•
•
•
•
•
Allele
Tg(RP23-326M22)760She | MGI:4461458
Name: transgene insertion 760, Sarah Elsea
Allele Type: Transgenic
Attribute String: Inserted expressed sequence
•
•
•
•
•
Transgene
MGI:4461457 | Tg(RP23-326M22)760She
Type: transgene
Organism: mouse, laboratory
•
•
•
•
•
Allele
Tg(tetO-Rai1,-EGFP)479Walz | MGI:5555965
Name: transgene insertion 479, Katherina Walz
Allele Type: Transgenic
Attribute String: Inducible, Inserted expressed sequence, Reporter
•
•
•
•
•
Allele
Tg(tetO-Rai1,-EGFP)463Walz | MGI:5555964
Name: transgene insertion 463, Katherina Walz
Allele Type: Transgenic
Attribute String: Inducible, Inserted expressed sequence, Reporter
•
•
•
•
•
Protein
G3UZP8
Organism: Mus musculus/domesticus
Length: 144  
Fragment?: true
•
•
•
•
•
Publication
21952049 | -
First Author: Pane A
Year: 2011
Journal: EMBO J
Title: The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline.
Volume: 30
Issue: 22
Pages: 4601-15
•
•
•
•
•
Protein Domain
IPR039039 | RAI1-like_fam
Type: Family
Description: Yeast RAI1 is homologous to Caenorhabditis elegans DOM-3 and human DOM3Z (DXO). They have both decapping and 5'-3' exoribonuclease activity and are a component of the mRNA 5'-end capping quality control mechanism [, ]. RAI1 is a single-copy gene in most organisms; however S. cerevisiae contains a second homologue, DXO1, which also possesses decapping and 5'-3' exoribonuclease activity, whereas RAI1 has decapping and pyrophosphohydrolase activities []. This domain is also found in DXO1 homologue from Arabidopsis []. This entry also includes protein Cutoff (Cuff) from Drosophila. Differently from Rai1, Cuff does not display a Dom3Z domain, which is critical for Rai1 activity. Rai1 has been shown to regulate piRNA cluster expression and piRNA production in the Drosophila germline [].
•
•
•
•
•
Allele
Del(11Cops3-Gid4)2Jrl | MGI:3521986
Name: deletion, Chr 11, James R Lupski 2
Allele Type: Targeted
Attribute String: Null/knockout
•
•
•
•
•
Allele
Rai1<tm2.1Luo> | MGI:5816464
Name: retinoic acid induced 1; targeted mutation 2.1, Liqun Luo
Allele Type: Targeted
Attribute String: Conditional ready
•
•
•
•
•
Allele
Rai1<tm1Jrl> | MGI:3526160
Name: retinoic acid induced 1; targeted mutation 1, James R Lupski
Allele Type: Targeted
Attribute String: Null/knockout
•
•
•
•
•
Allele
Del(11Cops3-Rnf112)1Jrl | MGI:3521985
Name: deletion, Chr 11, James R Lupski 1
Allele Type: Targeted
Attribute String: Null/knockout
•
•
•
•
•
Allele
Rai1<tm1Luo> | MGI:5816453
Name: retinoic acid induced 1; targeted mutation 1, Liqun Luo
Allele Type: Targeted
Attribute String: Conditional ready, Reporter
•
•
•
•
•
Chromosome Structure Variation
MGI:3521942 | Del(11Cops3-Gid4)2Jrl
Type: chromosomal_deletion
Organism: mouse, laboratory
•
•
•
•
•
Chromosome Structure Variation
MGI:3521936 | Del(11Cops3-Rnf112)1Jrl
Type: chromosomal_deletion
Organism: mouse, laboratory
•
•
•
•
•
Genotype
Genotype
Symbol: Del(11Cops3-Rnf112)1Jrl/+
Background: involves: 129S7/SvEvBrd * C57BL/6
Zygosity: ht
Has Mutant Allele: true
•
•
•
•
•
Genotype
Genotype
Symbol: Del(11Cops3-Gid4)2Jrl/+
Background: involves: 129S7/SvEvBrd * C57BL/6
Zygosity: ht
Has Mutant Allele: true
•
•
•
•
•
Genotype
Genotype
Symbol: Rai1/Rai1<+>
Background: involves: 129S/SvEvBrd * C57BL/6
Zygosity: ht
Has Mutant Allele: true
•
•
•
•
•
Genotype
Genotype
Symbol: Rai1/Rai1<+>
Background: B6.129S7-Rai1/J
Zygosity: ht
Has Mutant Allele: true
•
•
•
•
•
Genotype
Genotype
Symbol: Rai1/Rai1 Tg(Nes-cre)1Kln/?
Background: either: (involves: 129S1/Sv * C57BL/6 * SJL) or (involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * SJL)
Zygosity: cn
Has Mutant Allele: true
•
•
•
•
•
DO Term
DOID:0060768 | Smith-Magenis syndrome
•
•
•
•
•
Strain
MGI:5816465 | STOCK Rai1<tm1Luo>/J
Attribute String: mutant stock, targeted mutation
•
•
•
•
•
Strain
MGI:4462255 | B6.Cg-Tg(RP23-326M22)760She
Attribute String: congenic, mutant strain, transgenic
•
•
•
•
•
Genotype
Genotype
Symbol: Tg(RP23-326M22)760She/?
Background: B6.Cg-Tg(RP23-326M22)760She
Zygosity: ot
Has Mutant Allele: true
•
•
•
•
•
Genotype
Genotype
Symbol: Tg(RP23-326M22)760She/Tg(RP23-326M22)760She
Background: B6.Cg-Tg(RP23-326M22)760She
Zygosity: hm
Has Mutant Allele: true
•
•
•
•
•
Genotype
Genotype
Symbol: Tg(Camk2a-tTA)1Mmay/? Tg(tetO-Rai1,-EGFP)463Walz/?
Background: involves: C57BL/6J * CBA/J
Zygosity: cx
Has Mutant Allele: true
•
•
•
•
•
Genotype
Genotype
Symbol: Tg(Camk2a-tTA)1Mmay/? Tg(tetO-Rai1,-EGFP)479Walz/?
Background: involves: C57BL/6J * CBA/J
Zygosity: cx
Has Mutant Allele: true
•
•
•
•
•
Publication
23523372 | J:196446
First Author: Jiao X
Year: 2013
Journal: Mol Cell
Title: A mammalian pre-mRNA 5' end capping quality control mechanism and an unexpected link of capping to pre-mRNA processing.
Volume: 50
Issue: 1
Pages: 104-15
•
•
•
•
•
Publication
32374864 | J:306600
First Author: Doamekpor SK
Year: 2020
Journal: Nucleic Acids Res
Title: DXO/Rai1 enzymes remove 5'-end FAD and dephospho-CoA caps on RNAs.
Volume: 48
Issue: 11
Pages: 6136-6148
•
•
•
•
•
Publication
15459175 | J:94405
First Author: Yan J
Year: 2004
Journal: Hum Mol Genet
Title: Reduced penetrance of craniofacial anomalies as a function of deletion size and genetic background in a chromosome engineered partial mouse model for Smith-Magenis syndrome.
Volume: 13
Issue: 21
Pages: 2613-24
•
•
•
•
•
Publication
15489334 | -
First Author: Gerhard DS
Year: 2004
Journal: Genome Res
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
Volume: 14
Issue: 10B
Pages: 2121-7
•
•
•
•
•




MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

Copyright © 2017 by The Jackson Laboratory. All Rights Reserved

© 2002 - 2017 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom