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Search results 201 to 290 out of 290 for Rif1

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Type Details Score
GXD Expression
GXD Expression
Probe: MGI:3618517
Assay Type: Immunohistochemistry
Annotation Date: 2006-04-05
Strength: Present
Sex: Female
Emaps: EMAPS:3077928
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:3618529
Age: postnatal adult
Image: 6G
Note: Expression is in the nuclei of fully grown oocytes in antral follicles.
Specimen Label: 6G
Detected: true
Specimen Num: 36
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GXD Expression
GXD Expression
 
Probe: MGI:3618517
Assay Type: Immunohistochemistry
Annotation Date: 2006-04-05
Strength: Weak
Sex: Not Specified
Emaps: EMAPS:1605711
Pattern: Not Specified
Stage: TS11
Assay Id: MGI:3618529
Age: embryonic day 7.5
Image: 4 7.5 dpc
Specimen Label: 4 7.5 dpc
Detected: true
Specimen Num: 13
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GXD Expression
GXD Expression
   
Probe: MGI:4845920
Assay Type: RNA in situ
Annotation Date: 2014-02-07
Strength: Absent
Sex: Female
Emaps: EMAPS:2892420
Stage: TS20
Assay Id: MGI:5540731
Age: embryonic day 12.5
Image: GUDMAP:8300
Specimen Label: GUDMAP:8300
Detected: false
Specimen Num: 4
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GXD Expression
GXD Expression
Probe: MGI:3618517
Assay Type: Immunohistochemistry
Annotation Date: 2006-04-05
Strength: Present
Sex: Not Specified
Emaps: EMAPS:160362
Pattern: Not Specified
Stage: TS02
Assay Id: MGI:3618529
Age: embryonic day 1.0
Image: 3E
Note: Expression is nuclear.
Specimen Label: 3E
Detected: true
Specimen Num: 5
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GXD Expression
GXD Expression
   
Probe: MGI:3618517
Assay Type: Immunohistochemistry
Annotation Date: 2006-04-05
Strength: Absent
Sex: Not Specified
Emaps: EMAPS:160516
Stage: TS06
Assay Id: MGI:3618529
Age: embryonic day 4.5
Image: 3J
Specimen Label: 3J
Detected: false
Specimen Num: 10
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GXD Expression
GXD Expression
Probe: MGI:4845920
Assay Type: RNA in situ
Annotation Date: 2014-02-07
Strength: Present
Sex: Female
Emaps: EMAPS:1796220
Pattern: Regionally restricted
Stage: TS20
Assay Id: MGI:5540731
Age: embryonic day 12.5
Image: GUDMAP:8300
Note: speckled signal pattern is indicative of mesenchymal stroma
Specimen Label: GUDMAP:8300
Detected: true
Specimen Num: 4
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GXD Expression
GXD Expression
 
Probe: MGI:3618517
Assay Type: Immunohistochemistry
Annotation Date: 2006-04-05
Strength: Weak
Sex: Female
Emaps: EMAPS:3562728
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:3618529
Age: postnatal adult
Image: 6C
Specimen Label: 6C
Detected: true
Specimen Num: 32
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Publication
27820601 | J:240463
First Author: Hansen RK
Year: 2016
Journal: Nat Cell Biol
Title: SCAI promotes DNA double-strand break repair in distinct chromosomal contexts.
Volume: 18
Issue: 12
Pages: 1357-1366
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Publication
16518401 | J:107560
First Author: Loh YH
Year: 2006
Journal: Nat Genet
Title: The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells.
Volume: 38
Issue: 4
Pages: 431-40
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Publication
30293785 | J:269122
First Author: Delgado-Benito V
Year: 2018
Journal: Mol Cell
Title: The Chromatin Reader ZMYND8 Regulates Igh Enhancers to Promote Immunoglobulin Class Switch Recombination.
Volume: 72
Issue: 4
Pages: 636-649.e8
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Publication
29311308 | J:260725
First Author: Panchakshari RA
Year: 2018
Journal: Proc Natl Acad Sci U S A
Title: DNA double-strand break response factors influence end-joining features of IgH class switch and general translocation junctions.
Volume: 115
Issue: 4
Pages: 762-767
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Publication
26308889 | J:262446
First Author: Dong J
Year: 2015
Journal: Nature
Title: Orientation-specific joining of AID-initiated DNA breaks promotes antibody class switching.
Volume: 525
Issue: 7567
Pages: 134-139
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Publication
17093407 | J:154829
First Author: Wang J
Year: 2006
Journal: Nature
Title: A protein interaction network for pluripotency of embryonic stem cells.
Volume: 444
Issue: 7117
Pages: 364-8
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Publication
27320916 | J:238371
First Author: Rocha PP
Year: 2016
Journal: Cell Rep
Title: A Damage-Independent Role for 53BP1 that Impacts Break Order and Igh Architecture during Class Switch Recombination.
Volume: 16
Issue: 1
Pages: 48-55
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Publication
20362541 | J:184123
First Author: van den Berg DL
Year: 2010
Journal: Cell Stem Cell
Title: An Oct4-centered protein interaction network in embryonic stem cells.
Volume: 6
Issue: 4
Pages: 369-81
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Publication
24025402 | J:201508
First Author: Daxinger L
Year: 2013
Journal: Genome Biol
Title: An ENU mutagenesis screen identifies novel and known genes involved in epigenetic processes in the mouse.
Volume: 14
Issue: 9
Pages: R96
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Publication
16934000 | J:115983
First Author: Ghazalpour A
Year: 2006
Journal: PLoS Genet
Title: Integrating genetic and network analysis to characterize genes related to mouse weight.
Volume: 2
Issue: 8
Pages: e130
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Publication
20439489 | J:163558
First Author: Tarantino C
Year: 2010
Journal: FASEB J
Title: miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic stem cells.
Volume: 24
Issue: 9
Pages: 3255-63
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Publication
16107646 | J:100324
First Author: Bulfone A
Year: 2005
Journal: J Neurosci
Title: Telencephalic embryonic subtractive sequences: a unique collection of neurodevelopmental genes.
Volume: 25
Issue: 33
Pages: 7586-600
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Publication
19334288 | J:148410
First Author: Combes AN
Year: 2009
Journal: Dev Dyn
Title: Three-dimensional visualization of testis cord morphogenesis, a novel tubulogenic mechanism in development.
Volume: 238
Issue: 5
Pages: 1033-41
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Publication
- | J:238766
     
First Author: Shanghai Model Organisms Center
Year: 2017
Journal: MGI Direct Data Submission
Title: Information obtained from the Shanghai Model Organisms Center (SMOC), Shanghai, China
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Publication
15741177 | J:126097
First Author: Cobellis G
Year: 2005
Journal: Nucleic Acids Res
Title: Tagging genes with cassette-exchange sites.
Volume: 33
Issue: 4
Pages: e44
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Publication
10512203 | J:93290
First Author: Araki K
Year: 1999
Journal: Cell Mol Biol (Noisy-le-grand)
Title: Exchangeable gene trap using the Cre/mutated lox system.
Volume: 45
Issue: 5
Pages: 737-50
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Publication
15840001 | J:110088
First Author: Taniwaki T
Year: 2005
Journal: Dev Growth Differ
Title: Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette.
Volume: 47
Issue: 3
Pages: 163-72
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Publication
21731673 | J:174767
First Author: Tang F
Year: 2011
Journal: PLoS One
Title: Deterministic and stochastic allele specific gene expression in single mouse blastomeres.
Volume: 6
Issue: 6
Pages: e21208
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Publication
- | J:24194
     
First Author: The Jackson Laboratory Backcross DNA Panel Mapping Resource
Year: 1999
Journal: Database Release
Title: JAX BSS Panel Mapping Data
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Publication
20412781 | J:140465
First Author: Guo G
Year: 2010
Journal: Dev Cell
Title: Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst.
Volume: 18
Issue: 4
Pages: 675-85
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Publication
10725249 | J:60984
First Author: Ko MS
Year: 2000
Journal: Development
Title: Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development.
Volume: 127
Issue: 8
Pages: 1737-49
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Publication
12904583 | J:85162
First Author: Hansen J
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome.
Volume: 100
Issue: 17
Pages: 9918-22
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Publication
17967808 | J:152068
First Author: Friedel RH
Year: 2007
Journal: Brief Funct Genomic Proteomic
Title: EUCOMM--the European conditional mouse mutagenesis program.
Volume: 6
Issue: 3
Pages: 180-5
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Publication
- | J:80155
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations for FANTOM2 data
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Publication
- | J:57656
     
First Author: Lennon G
Year: 1999
Journal: Database Download
Title: WashU-HHMI Mouse EST Project
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Publication
- | J:155845
     
First Author: Wellcome Trust Sanger Institute
Year: 2010
Journal: MGI Direct Data Submission
Title: Alleles produced for the EUCOMM and EUCOMMTools projects by the Wellcome Trust Sanger Institute
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Publication
- | J:171409
     
First Author: GUDMAP Consortium
Year: 2004
Journal: www.gudmap.org
Title: GUDMAP: the GenitoUrinary Development Molecular Anatomy Project
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Publication
18799693 | J:142754
First Author: Hansen GM
Year: 2008
Journal: Genome Res
Title: Large-scale gene trapping in C57BL/6N mouse embryonic stem cells.
Volume: 18
Issue: 10
Pages: 1670-9
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Publication
- | J:342605
       
First Author: GOA curators
Year: 2016
Title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
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Publication
16602821 | J:162220
First Author: Magdaleno S
Year: 2006
Journal: PLoS Biol
Title: BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system.
Volume: 4
Issue: 4
Pages: e86
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Publication
- | J:85000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Title: MGI Sequence Curation Reference
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Publication
11217851 | J:65060
First Author: Kawai J
Year: 2001
Journal: Nature
Title: Functional annotation of a full-length mouse cDNA collection.
Volume: 409
Issue: 6821
Pages: 685-90
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Publication
14610273 | J:86696
First Author: Zambrowicz BP
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
Volume: 100
Issue: 24
Pages: 14109-14
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Publication
- | J:141210
     
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
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Publication
21677750 | J:173534
First Author: Skarnes WC
Year: 2011
Journal: Nature
Title: A conditional knockout resource for the genome-wide study of mouse gene function.
Volume: 474
Issue: 7351
Pages: 337-42
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Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
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Publication
- | J:60000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2000
Title: Gene Ontology Annotation by electronic association of SwissProt Keywords with GO terms
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Publication
- | J:342587
       
First Author: AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators
Year: 2011
Title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
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Publication
- | J:68900
     
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
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Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
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Publication
- | J:164563
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Title: Human to Mouse ISO GO annotation transfer
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Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
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Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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UniProt Feature
UniProt Feature
Begin: 1
Description: Telomere-associated protein RIF1
Type: chain
End: 2419
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Protein
Q6PR54-3
Organism: Mus musculus/domesticus
Length: 2426  
Fragment?: false
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Protein
Q6PR54-2
Organism: Mus musculus/domesticus
Length: 2393  
Fragment?: false
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Protein
A0A2I3BQB0
Organism: Mus musculus/domesticus
Length: 44  
Fragment?: false
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Protein Coding Gene
MGI:1351595 | Insl6
Type: protein_coding_gene
Organism: mouse, laboratory
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Allele
Rif1<tm3.1Sbcd> | MGI:5439959
Name: replication timing regulatory factor 1; targeted mutation 3.1, Sara B C Buonomo
Allele Type: Targeted
Attribute String: Reporter
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Allele
Rif1<em1Smoc> | MGI:7292056
Name: replication timing regulatory factor 1; endonuclease-mediated mutation 1, Shanghai Model Organisms Center
Allele Type: Endonuclease-mediated
Attribute String: Conditional ready, No functional change
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Allele
Tg(Rif1-EGFP)KC17Gsat | MGI:4847383
Name: transgene insertion KC17, GENSAT Project at Rockefeller University
Allele Type: Transgenic
Attribute String: Reporter
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Genotype
Genotype
Symbol: Rif1/Rif1
Background: involves: C57BL/6 * C57BL/6J
Zygosity: hm
Has Mutant Allele: true
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Publication
9087429 | -
First Author: Wotton D
Year: 1997
Journal: Genes Dev
Title: A novel Rap1p-interacting factor, Rif2p, cooperates with Rif1p to regulate telomere length in Saccharomyces cerevisiae.
Volume: 11
Issue: 6
Pages: 748-60
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Protein Domain
IPR022031 | Rif1_N
Type: Domain
Description: This domain is found in N-terminal of the telomere-associated protein,Rif1. In budding yeast, Rif1 is Recruited to telomeres by interaction with the C terminus of RAP1 is recruited to telomeres by interaction with the C terminus of RAP1 and negatively regulates telomere length by preventing telomere elongation or promoting degradation of the telomere ends [, ]. In mammals, Rif1 is required for checkpoint mediated arrest of cell cycle progression in response to DNA damage during S-phase (the intra-S-phase checkpoint) [].
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Strain
MGI:5004011 | STOCK Tg(Rif1-EGFP)KC17Gsat/Mmucd
Attribute String: mutant stock, transgenic
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Publication
31653568 | J:286257
First Author: Callen E
Year: 2020
Journal: Mol Cell
Title: 53BP1 Enforces Distinct Pre- and Post-resection Blocks on Homologous Recombination.
Volume: 77
Issue: 1
Pages: 26-38.e7
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Publication
37633048 | J:341349
 
First Author: Ni W
Year: 2023
Journal: Redox Biol
Title: An inducible long noncoding RNA, LncZFHX2, facilitates DNA repair to mediate osteoarthritis pathology.
Volume: 66
Pages: 102858
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Publication
35439434 | J:337726
First Author: Bayley R
Year: 2022
Journal: Mol Cell
Title: H3K4 methylation by SETD1A/BOD1L facilitates RIF1-dependent NHEJ.
Volume: 82
Issue: 10
Pages: 1924-1939.e10
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Publication
31390554 | J:288491
First Author: Sundaravinayagam D
Year: 2019
Journal: Cell Rep
Title: 53BP1 Supports Immunoglobulin Class Switch Recombination Independently of Its DNA Double-Strand Break End Protection Function.
Volume: 28
Issue: 6
Pages: 1389-1399.e6
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Publication
34354233 | J:325306
First Author: Zhao F
Year: 2021
Journal: Nat Cell Biol
Title: ASTE1 promotes shieldin-complex-mediated DNA repair by attenuating end resection.
Volume: 23
Issue: 8
Pages: 894-904
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Publication
28604711 | J:250571
 
First Author: Ha K
Year: 2017
Journal: Nat Commun
Title: The anaphase promoting complex impacts repair choice by protecting ubiquitin signalling at DNA damage sites.
Volume: 8
Pages: 15751
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Publication
28240985 | J:244866
   
First Author: Luijsterburg MS
Year: 2017
Journal: Elife
Title: A PALB2-interacting domain in RNF168 couples homologous recombination to DNA break-induced chromatin ubiquitylation.
Volume: 6
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Publication
31302002 | J:279873
First Author: Colomer C
Year: 2019
Journal: Mol Cell
Title: IKKα Kinase Regulates the DNA Damage Response and Drives Chemo-resistance in Cancer.
Volume: 75
Issue: 4
Pages: 669-682.e5
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Publication
26786103 | J:231228
First Author: Tanaka H
Year: 2016
Journal: J Biol Chem
Title: Epigenetic Regulation of the Blimp-1 Gene (Prdm1) in B Cells Involves Bach2 and Histone Deacetylase 3.
Volume: 291
Issue: 12
Pages: 6316-30
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Publication
25799990 | J:222163
First Author: Boersma V
Year: 2015
Journal: Nature
Title: MAD2L2 controls DNA repair at telomeres and DNA breaks by inhibiting 5' end resection.
Volume: 521
Issue: 7553
Pages: 537-540
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Publication
31619063 | J:307019
First Author: Li Z
Year: 2020
Journal: Arterioscler Thromb Vasc Biol
Title: Short AIP1 (ASK1-Interacting Protein-1) Isoform Localizes to the Mitochondria and Promotes Vascular Dysfunction.
Volume: 40
Issue: 1
Pages: 112-127
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Publication
10598589 | J:58920
First Author: Hsu SY
Year: 1999
Journal: Mol Endocrinol
Title: Cloning of two novel mammalian paralogs of relaxin/insulin family proteins and their expression in testis and kidney.
Volume: 13
Issue: 12
Pages: 2163-74
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Publication
- | J:100256
     
First Author: The Gene Expression Nervous System Atlas (GENSAT) Project, The Rockefeller University (New York, NY)
Year: 2005
Journal: Database Download
Title: MGI download of GENSAT transgene data
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Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
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Publication
15489334 | -
First Author: Gerhard DS
Year: 2004
Journal: Genome Res
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
Volume: 14
Issue: 10B
Pages: 2121-7
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Publication
21183079 | J:292518
First Author: Huttlin EL
Year: 2010
Journal: Cell
Title: A tissue-specific atlas of mouse protein phosphorylation and expression.
Volume: 143
Issue: 7
Pages: 1174-89
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Publication
19468303 | -
First Author: Church DM
Year: 2009
Journal: PLoS Biol
Title: Lineage-specific biology revealed by a finished genome assembly of the mouse.
Volume: 7
Issue: 5
Pages: e1000112
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MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

Copyright © 2017 by The Jackson Laboratory. All Rights Reserved

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