|  Help  |  About  |  Contact Us

Search our database by keyword

Examples

  • Search this entire website. Enter identifiers, names or keywords for genes, diseases, strains, ontology terms, etc. (e.g. Pax6, Parkinson, ataxia)
  • Use OR to search for either of two terms (e.g. OR mus) or quotation marks to search for phrases (e.g. "dna binding").
  • Boolean search syntax is supported: e.g. Balb* for partial matches or mus AND NOT embryo to exclude a term

Search results 101 to 172 out of 172 for Ccdc39

<< First    < Previous  |  Next >    Last >>
0.044s

Categories

Hits by Strain

Hits by Category

Type Details Score
GXD Expression
GXD Expression
 
Probe: MGI:6147541
Assay Type: Immunohistochemistry
Annotation Date: 2018-03-27
Strength: Present
Sex: Not Specified
Emaps: EMAPS:3274226
Pattern: Not Specified
Stage: TS26
Assay Id: MGI:6147580
Age: embryonic day 18.5
Image: S3B bottom right
Specimen Label: S3B bottom right
Detected: true
Specimen Num: 26
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:4423308
Assay Type: RNA in situ
Annotation Date: 2018-03-27
Strength: Present
Sex: Not Specified
Emaps: EMAPS:3274222
Pattern: Not Specified
Stage: TS22
Assay Id: MGI:6147577
Age: embryonic day 14.5
Image: 4A
Specimen Label: 4A
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
   
Assay Type: In situ reporter (knock in)
Annotation Date: 2021-04-16
Strength: Present
Sex: Male
Emaps: EMAPS:1929028
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:6691312
Age: postnatal adult
Image: UC Davis_1875991
Specimen Label: UC Davis_1875991
Detected: true
Specimen Num: 18
•
•
•
•
•
GXD Expression
GXD Expression
   
Assay Type: In situ reporter (knock in)
Annotation Date: 2021-04-16
Strength: Present
Sex: Male
Emaps: EMAPS:1929028
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:6691312
Age: postnatal adult
Image: UC Davis_1875992
Specimen Label: UC Davis_1875992
Detected: true
Specimen Num: 19
•
•
•
•
•
GXD Expression
GXD Expression
   
Assay Type: In situ reporter (knock in)
Annotation Date: 2021-04-16
Strength: Present
Sex: Female
Emaps: EMAPS:3276428
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:6691312
Age: postnatal adult
Image: UC Davis_1875997
Specimen Label: UC Davis_1875997
Detected: true
Specimen Num: 3
•
•
•
•
•
GXD Expression
GXD Expression
   
Assay Type: In situ reporter (knock in)
Annotation Date: 2021-04-16
Strength: Present
Sex: Male
Emaps: EMAPS:3276428
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:6691312
Age: postnatal adult
Image: UC Davis_1875982
Specimen Label: UC Davis_1875982
Detected: true
Specimen Num: 12
•
•
•
•
•
GXD Expression
GXD Expression
   
Assay Type: In situ reporter (knock in)
Annotation Date: 2021-04-16
Strength: Present
Sex: Female
Emaps: EMAPS:1757728
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:6691312
Age: postnatal adult
Image: UC Davis_1875998
Specimen Label: UC Davis_1875998
Detected: true
Specimen Num: 4
•
•
•
•
•
GXD Expression
GXD Expression
   
Assay Type: In situ reporter (knock in)
Annotation Date: 2021-04-16
Strength: Present
Sex: Male
Emaps: EMAPS:1757728
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:6691312
Age: postnatal adult
Image: UC Davis_1875983
Specimen Label: UC Davis_1875983
Detected: true
Specimen Num: 13
•
•
•
•
•
GXD Expression
GXD Expression
   
Assay Type: In situ reporter (knock in)
Annotation Date: 2021-04-16
Strength: Present
Sex: Male
Emaps: EMAPS:1757728
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:6691312
Age: postnatal adult
Image: UC Davis_1875984
Specimen Label: UC Davis_1875984
Detected: true
Specimen Num: 14
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:6147541
Assay Type: Immunohistochemistry
Annotation Date: 2018-03-27
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689422
Pattern: Not Specified
Stage: TS22
Assay Id: MGI:6147580
Age: embryonic day 14.5
Image: 4D
Specimen Label: 4D
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:6147541
Assay Type: Immunohistochemistry
Annotation Date: 2018-03-27
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689422
Pattern: Not Specified
Stage: TS22
Assay Id: MGI:6147580
Age: embryonic day 14.5
Image: 4E
Specimen Label: 4E
Detected: true
Specimen Num: 2
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:6147541
Assay Type: Immunohistochemistry
Annotation Date: 2018-03-27
Strength: Ambiguous
Sex: Not Specified
Emaps: EMAPS:1689422
Pattern: Not Specified
Stage: TS22
Assay Id: MGI:6147580
Age: embryonic day 14.5
Image: 4F
Note: Authors report loss of expression - reduced to nearly undetectable levels - in mutant brains.
Specimen Label: 4F
Specimen Num: 3
•
•
•
•
•
Publication
28289722 | J:264151
First Author: Solomon GM
Year: 2017
Journal: JCI Insight
Title: Assessment of ciliary phenotype in primary ciliary dyskinesia by micro-optical coherence tomography.
Volume: 2
Issue: 5
Pages: e91702
•
•
•
•
•
Publication
21515572 | J:174027
First Author: Stottmann RW
Year: 2011
Journal: Genetics
Title: Focusing forward genetics: a tripartite ENU screen for neurodevelopmental mutations in the mouse.
Volume: 188
Issue: 3
Pages: 615-24
•
•
•
•
•
Publication
27340223 | J:237132
First Author: Burnicka-Turek O
Year: 2016
Journal: Hum Mol Genet
Title: Cilia gene mutations cause atrioventricular septal defects by multiple mechanisms.
Volume: 25
Issue: 14
Pages: 3011-3028
•
•
•
•
•
Publication
25807483 | J:222159
First Author: Li Y
Year: 2015
Journal: Nature
Title: Global genetic analysis in mice unveils central role for cilia in congenital heart disease.
Volume: 521
Issue: 7553
Pages: 520-4
•
•
•
•
•
Publication
- | J:175213
     
First Author: Lo C
Year: 2011
Journal: MGI Direct Data Submission (B2B/CvDC)
Title: Information submitted by the NHLBI Cardiovascular Development Consortium (CvDC), Bench to Bassinet Program (B2B/CvDC)
•
•
•
•
•
Publication
- | J:24194
     
First Author: The Jackson Laboratory Backcross DNA Panel Mapping Resource
Year: 1999
Journal: Database Release
Title: JAX BSS Panel Mapping Data
•
•
•
•
•
Publication
10725249 | J:60984
First Author: Ko MS
Year: 2000
Journal: Development
Title: Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development.
Volume: 127
Issue: 8
Pages: 1737-49
•
•
•
•
•
Publication
- | J:73065
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2001
Title: Gene Ontology Annotation by the MGI Curatorial Staff
•
•
•
•
•
Publication
- | J:73796
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Function or Process or Component Unknown following Literature Review
•
•
•
•
•
Publication
- | J:346132
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2016
Title: Automatic assignment of GO terms using logical inference, based on on inter-ontology links
•
•
•
•
•
Publication
24194600 | J:228563
First Author: Koscielny G
Year: 2014
Journal: Nucleic Acids Res
Title: The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data.
Volume: 42
Issue: Database issue
Pages: D802-9
•
•
•
•
•
Publication
- | J:80155
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations for FANTOM2 data
•
•
•
•
•
Publication
- | J:204739
     
First Author: International Knockout Mouse Consortium
Year: 2014
Journal: Database Download
Title: MGI download of modified allele data from IKMC and creation of new knockout alleles
•
•
•
•
•
Publication
- | J:57656
     
First Author: Lennon G
Year: 1999
Journal: Database Download
Title: WashU-HHMI Mouse EST Project
•
•
•
•
•
Publication
- | J:204812
     
First Author: International Mouse Strain Resource
Year: 2014
Journal: Database Download
Title: MGI download of germline transmission data for alleles from IMSR strain data
•
•
•
•
•
Publication
- | J:148605
     
First Author: Wellcome Trust Sanger Institute
Year: 2009
Journal: MGI Direct Data Submission
Title: Alleles produced for the KOMP project by the Wellcome Trust Sanger Institute
•
•
•
•
•
Publication
- | J:211773
     
First Author: Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC)
Year: 2014
Journal: Database Release
Title: Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database
•
•
•
•
•
Publication
- | J:342605
       
First Author: GOA curators
Year: 2016
Title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
•
•
•
•
•
Publication
- | J:85000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Title: MGI Sequence Curation Reference
•
•
•
•
•
Publication
11217851 | J:65060
First Author: Kawai J
Year: 2001
Journal: Nature
Title: Functional annotation of a full-length mouse cDNA collection.
Volume: 409
Issue: 6821
Pages: 685-90
•
•
•
•
•
Publication
- | J:23000
       
First Author: MGD Nomenclature Committee
Year: 1995
Title: Nomenclature Committee Use
•
•
•
•
•
Publication
21677750 | J:173534
First Author: Skarnes WC
Year: 2011
Journal: Nature
Title: A conditional knockout resource for the genome-wide study of mouse gene function.
Volume: 474
Issue: 7351
Pages: 337-42
•
•
•
•
•
Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
•
•
•
•
•
Publication
- | J:342587
       
First Author: AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators
Year: 2011
Title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
•
•
•
•
•
Publication
- | J:68900
     
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
•
•
•
•
•
Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
•
•
•
•
•
Publication
- | J:164563
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Title: Human to Mouse ISO GO annotation transfer
•
•
•
•
•
Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
•
•
•
•
•
Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
•
•
•
•
•
Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
•
•
•
•
•
Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
•
•
•
•
•
Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
•
•
•
•
•
Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
•
•
•
•
•
Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
•
•
•
•
•
Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
•
•
•
•
•
Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
•
•
•
•
•
Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
•
•
•
•
•
Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
•
•
•
•
•
Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
•
•
•
•
•
Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
•
•
•
•
•
Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
•
•
•
•
•
GXD Expression
GXD Expression
Probe: MGI:6147547
Assay Type: Immunohistochemistry
Annotation Date: 2018-03-27
Strength: Present
Sex: Not Specified
Emaps: EMAPS:3267424
Pattern: Regionally restricted
Stage: TS24
Assay Id: MGI:6147583
Age: embryonic day 16.5
Image: 4G E16.5 FOXJ1
Note: Co-expression with Ccdc39 in ependhymal cells on ventromedial walls as early as E16.
Specimen Label: 4G E16.5 FOXJ1
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
Probe: MGI:6147547
Assay Type: Immunohistochemistry
Annotation Date: 2018-03-27
Strength: Present
Sex: Not Specified
Emaps: EMAPS:3786527
Pattern: Regionally restricted
Stage: TS27
Assay Id: MGI:6147583
Age: postnatal day 0
Image: 4G P0 FOXJ1
Note: Co-expression with Ccdc39 in ependhymal cells on ventromedial walls continues through P0.
Specimen Label: 4G P0 FOXJ1
Detected: true
Specimen Num: 2
•
•
•
•
•
Allele
Ccdc39<b2b2025.1Clo> | MGI:5554444
 
Name: coiled-coil domain containing 39; Bench to Bassinet Program (B2B/CVDC) mutation 2025, subline 1, Cecilia Lo
Allele Type: Chemically induced (ENU)
•
•
•
•
•
Allele
b2b2025Clo | MGI:5491236
 
Name: Mutant line 2025; Bench to Bassinet Program (B2B/CVDC), mutation 2025 Cecilia Lo
Allele Type: Chemically induced (ENU)
•
•
•
•
•
DO Term
DOID:0110598 | primary ciliary dyskinesia 14
•
•
•
•
•
Allele
Ccdc39<b2b1735Clo> | MGI:5438066
 
Name: coiled-coil domain containing 39; Bench to Bassinet Program (B2B/CVDC) mutation 1735, Cecilia Lo
Allele Type: Chemically induced (ENU)
•
•
•
•
•
Heritable Phenotypic Marker
MGI:5491159 | b2b2025Clo
Type: heritable_phenotypic_marker
Organism: mouse, laboratory
•
•
•
•
•
Allele
Ccdc39<b2b1304Clo> | MGI:5316786
 
Name: coiled-coil domain containing 39; Bench to Bassinet Program (B2B/CvDC) mutation 1304, Cecilia Lo
Allele Type: Chemically induced (ENU)
•
•
•
•
•
Genotype
Genotype
Symbol: b2b2025Clo/b2b2025Clo
Background: C57BL/6J-b2b2025Clo
Zygosity: hm
Has Mutant Allele: true
•
•
•
•
•
Genotype
Genotype
Symbol: Ccdc39/Ccdc39
Background: C57BL/6J-Ccdc39
Zygosity: hm
Has Mutant Allele: true
•
•
•
•
•
Protein
Q8BI79
Organism: Mus musculus/domesticus
Length: 1192  
Fragment?: false
•
•
•
•
•
Protein
A0A494BAF9
Organism: Mus musculus/domesticus
Length: 1262  
Fragment?: false
•
•
•
•
•
Protein
Q8BI54
Organism: Mus musculus/domesticus
Length: 186  
Fragment?: false
•
•
•
•
•
Publication
21131974 | J:168691
First Author: Becker-Heck A
Year: 2011
Journal: Nat Genet
Title: The coiled-coil domain containing protein CCDC40 is essential for motile cilia function and left-right axis formation.
Volume: 43
Issue: 1
Pages: 79-84
•
•
•
•
•
Publication
28182636 | J:245906
First Author: Sugrue KF
Year: 2017
Journal: PLoS One
Title: Mechanism for generation of left isomerism in Ccdc40 mutant embryos.
Volume: 12
Issue: 2
Pages: e0171180
•
•
•
•
•
Publication
25619595 | -
First Author: Sui W
Year: 2016
Journal: Clin Respir J
Title: CCDC40 mutation as a cause of primary ciliary dyskinesia: a case report and review of literature.
Volume: 10
Issue: 5
Pages: 614-21
•
•
•
•
•
Protein Domain
IPR037386 | CCDC40
Type: Family
Description: Coiled-coil domain containing protein 40 (CCDC40) plays an evolutionary conserved role in the assembly of motile cilia and establishment of the left-right axis [, ]. CCDC40 may serve as a part of the axoneme structural scaffold. It has been shown to be required for axonemal recruitment of CCDC39 []. CCDC40 mutation is a cause of primary ciliary dyskinesia [].
•
•
•
•
•
Genotype
Genotype
Symbol: Ccdc39/Ccdc39
Background: C57BL/6J-Ccdc39
Zygosity: hm
Has Mutant Allele: true
•
•
•
•
•
Genotype
Genotype
Symbol: Ccdc39/Ccdc39
Background: C57BL/6J-Ccdc39
Zygosity: hm
Has Mutant Allele: true
•
•
•
•
•




MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

Copyright © 2017 by The Jackson Laboratory. All Rights Reserved

© 2002 - 2017 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom