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Search results 201 to 298 out of 298 for Nip7

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Type Details Score
GXD Expression
GXD Expression
 
Probe: MGI:1371222
Assay Type: RNA in situ
Annotation Date: 2010-09-14
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:1791823
Pattern: Regionally restricted
Stage: TS23
Assay Id: MGI:4826714
Age: embryonic day 14.5
Image: euxassay_004749_11
Specimen Label: euxassay_004749_11
Detected: true
Specimen Num: 11
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GXD Expression
GXD Expression
 
Probe: MGI:1371222
Assay Type: RNA in situ
Annotation Date: 2010-09-14
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:1791823
Pattern: Regionally restricted
Stage: TS23
Assay Id: MGI:4826714
Age: embryonic day 14.5
Image: euxassay_004749_13
Specimen Label: euxassay_004749_13
Detected: true
Specimen Num: 13
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GXD Expression
GXD Expression
 
Probe: MGI:1371222
Assay Type: RNA in situ
Annotation Date: 2010-09-14
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:1791823
Pattern: Regionally restricted
Stage: TS23
Assay Id: MGI:4826714
Age: embryonic day 14.5
Image: euxassay_004749_14
Specimen Label: euxassay_004749_14
Detected: true
Specimen Num: 14
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GXD Expression
GXD Expression
   
Probe: MGI:1371222
Assay Type: RNA in situ
Annotation Date: 2014-02-07
Strength: Absent
Sex: Not Specified
Emaps: EMAPS:2772126
Stage: TS26
Assay Id: MGI:5538829
Age: embryonic day 17.5
Image: GUDMAP:15568
Specimen Label: GUDMAP:15568
Detected: false
Specimen Num: 1
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GXD Expression
GXD Expression
 
Probe: MGI:1371222
Assay Type: RNA in situ
Annotation Date: 2010-09-14
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:1625523
Pattern: Regionally restricted
Stage: TS23
Assay Id: MGI:4826714
Age: embryonic day 14.5
Image: euxassay_004749_05
Specimen Label: euxassay_004749_05
Detected: true
Specimen Num: 5
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GXD Expression
GXD Expression
 
Probe: MGI:1371222
Assay Type: RNA in situ
Annotation Date: 2010-09-14
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:1625523
Pattern: Regionally restricted
Stage: TS23
Assay Id: MGI:4826714
Age: embryonic day 14.5
Image: euxassay_004749_06
Specimen Label: euxassay_004749_06
Detected: true
Specimen Num: 6
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GXD Expression
GXD Expression
 
Probe: MGI:1371222
Assay Type: RNA in situ
Annotation Date: 2010-09-14
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:1625523
Pattern: Regionally restricted
Stage: TS23
Assay Id: MGI:4826714
Age: embryonic day 14.5
Image: euxassay_004749_07
Specimen Label: euxassay_004749_07
Detected: true
Specimen Num: 7
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GXD Expression
GXD Expression
 
Probe: MGI:1371222
Assay Type: RNA in situ
Annotation Date: 2010-09-14
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:1625523
Pattern: Regionally restricted
Stage: TS23
Assay Id: MGI:4826714
Age: embryonic day 14.5
Image: euxassay_004749_08
Specimen Label: euxassay_004749_08
Detected: true
Specimen Num: 8
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•
GXD Expression
GXD Expression
 
Probe: MGI:1371222
Assay Type: RNA in situ
Annotation Date: 2010-09-14
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:1625523
Pattern: Regionally restricted
Stage: TS23
Assay Id: MGI:4826714
Age: embryonic day 14.5
Image: euxassay_004749_09
Specimen Label: euxassay_004749_09
Detected: true
Specimen Num: 9
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•
GXD Expression
GXD Expression
 
Probe: MGI:1371222
Assay Type: RNA in situ
Annotation Date: 2010-09-14
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:1625523
Pattern: Regionally restricted
Stage: TS23
Assay Id: MGI:4826714
Age: embryonic day 14.5
Image: euxassay_004749_10
Specimen Label: euxassay_004749_10
Detected: true
Specimen Num: 10
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•
GXD Expression
GXD Expression
 
Probe: MGI:1371222
Assay Type: RNA in situ
Annotation Date: 2010-09-14
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:1625523
Pattern: Regionally restricted
Stage: TS23
Assay Id: MGI:4826714
Age: embryonic day 14.5
Image: euxassay_004749_11
Specimen Label: euxassay_004749_11
Detected: true
Specimen Num: 11
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•
GXD Expression
GXD Expression
 
Probe: MGI:1371222
Assay Type: RNA in situ
Annotation Date: 2010-09-14
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:1625523
Pattern: Regionally restricted
Stage: TS23
Assay Id: MGI:4826714
Age: embryonic day 14.5
Image: euxassay_004749_12
Specimen Label: euxassay_004749_12
Detected: true
Specimen Num: 12
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GXD Expression
GXD Expression
 
Probe: MGI:1371222
Assay Type: RNA in situ
Annotation Date: 2010-09-14
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:1625523
Pattern: Regionally restricted
Stage: TS23
Assay Id: MGI:4826714
Age: embryonic day 14.5
Image: euxassay_004749_13
Specimen Label: euxassay_004749_13
Detected: true
Specimen Num: 13
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•
GXD Expression
GXD Expression
 
Probe: MGI:1371222
Assay Type: RNA in situ
Annotation Date: 2010-09-14
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:1625523
Pattern: Regionally restricted
Stage: TS23
Assay Id: MGI:4826714
Age: embryonic day 14.5
Image: euxassay_004749_14
Specimen Label: euxassay_004749_14
Detected: true
Specimen Num: 14
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Publication
- | J:104190
     
First Author: The Australian Phenomics Facility at The Australian National University
Year: 2006
Journal: MGI Direct Data Submission
Title: Heritable mouse mutants from the ENU mutagenesis program at the Australian Phenomics Facility at The Australian National University
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Publication
- | J:342609
       
First Author: UniProt
Year: 2021
Title: Electronic Gene Ontology annotations created by ARBA machine learning models
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Publication
17967808 | J:152068
First Author: Friedel RH
Year: 2007
Journal: Brief Funct Genomic Proteomic
Title: EUCOMM--the European conditional mouse mutagenesis program.
Volume: 6
Issue: 3
Pages: 180-5
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Publication
- | J:136110
     
First Author: Velocigene
Year: 2008
Journal: MGI Direct Data Submission
Title: Alleles produced for the KOMP project by Velocigene (Regeneron Pharmaceuticals)
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Publication
- | J:148605
     
First Author: Wellcome Trust Sanger Institute
Year: 2009
Journal: MGI Direct Data Submission
Title: Alleles produced for the KOMP project by the Wellcome Trust Sanger Institute
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Publication
- | J:171409
     
First Author: GUDMAP Consortium
Year: 2004
Journal: www.gudmap.org
Title: GUDMAP: the GenitoUrinary Development Molecular Anatomy Project
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Publication
- | J:72247
       
First Author: DDB, FB, MGI, GOA, ZFIN curators
Year: 2001
Title: Gene Ontology annotation through association of InterPro records with GO terms
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Publication
- | J:157065
     
First Author: Helmholtz Zentrum Muenchen GmbH
Year: 2010
Journal: MGI Direct Data Submission
Title: Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu)
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Publication
- | J:342605
       
First Author: GOA curators
Year: 2016
Title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
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Publication
- | J:78475
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Chromosome assignment of mouse genes using the Mouse Genome Sequencing Consortium (MGSC) assembly and the ENSEMBL Database
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Publication
11217851 | J:65060
First Author: Kawai J
Year: 2001
Journal: Nature
Title: Functional annotation of a full-length mouse cDNA collection.
Volume: 409
Issue: 6821
Pages: 685-90
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Publication
14610273 | J:86696
First Author: Zambrowicz BP
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
Volume: 100
Issue: 24
Pages: 14109-14
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Publication
- | J:23000
       
First Author: MGD Nomenclature Committee
Year: 1995
Title: Nomenclature Committee Use
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Publication
- | J:141210
     
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
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Publication
21677750 | J:173534
First Author: Skarnes WC
Year: 2011
Journal: Nature
Title: A conditional knockout resource for the genome-wide study of mouse gene function.
Volume: 474
Issue: 7351
Pages: 337-42
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Publication
- | J:60000
       
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
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Publication
- | J:68900
     
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
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Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
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Publication
- | J:164563
       
First Author: The Gene Ontology Consortium
Year: 2010
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
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Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
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Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
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Publication
- | J:57747
     
First Author: MGI Genome Annotation Group and UniGene Staff
Year: 2015
Journal: Database Download
Title: MGI-UniGene Interconnection Effort
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Strain
MGI:5564712 | C57BL/6NCrlAnu-Nip7<m1Anu>/AnuApb
Attribute String: chemically induced mutation, mutant strain, coisogenic
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UniProt Feature
UniProt Feature
Begin: 1
Description: 60S ribosome subunit biogenesis protein NIP7 homolog
Type: chain
End: 180
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Protein
E9Q109
Organism: Mus musculus/domesticus
Length: 133  
Fragment?: false
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Gene
608637 | LOC608637
Type: gene
Organism: dog, domestic
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Gene
784076 | LOC784076
Type: gene
Organism: cattle
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Gene
100850347 | LOC100850347
Type: gene
Organism: cattle
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Gene
100425404 | LOC100425404
Type: gene
Organism: macaque, rhesus
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Gene
100426265 | LOC100426265
Type: gene
Organism: macaque, rhesus
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Gene
703818 | LOC703818
Type: gene
Organism: macaque, rhesus
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Gene
719195 | LOC719195
Type: gene
Organism: macaque, rhesus
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Gene
103694681 | LOC103694681
Type: gene
Organism: rat
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Gene
104005746 | LOC104005746
Type: gene
Organism: chimpanzee
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Gene
104006959 | LOC104006959
Type: gene
Organism: chimpanzee
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Gene
106558627 | LOC106558627
Type: gene
Organism: dog, domestic
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Gene
119871305 | LOC119871305
Type: gene
Organism: dog, domestic
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Gene
119876160 | LOC119876160
Type: gene
Organism: dog, domestic
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Gene
119879741 | LOC119879741
Type: gene
Organism: dog, domestic
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Gene
134485795 | LOC134485795
Type: gene
Organism: rat
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Gene
134485800 | LOC134485800
Type: gene
Organism: rat
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Gene
134485801 | LOC134485801
Type: gene
Organism: rat
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Publication
22195017 | -
First Author: Morello LG
Year: 2011
Journal: PLoS One
Title: The human nucleolar protein FTSJ3 associates with NIP7 and functions in pre-rRNA processing.
Volume: 6
Issue: 12
Pages: e29174
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Publication
15522784 | -
First Author: Liu JF
Year: 2004
Journal: J Struct Biol
Title: Crystal structure of KD93, a novel protein expressed in human hematopoietic stem/progenitor cells.
Volume: 148
Issue: 3
Pages: 370-4
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Publication
9271378 | -
First Author: Zanchin NI
Year: 1997
Journal: Mol Cell Biol
Title: Saccharomyces cerevisiae Nip7p is required for efficient 60S ribosome subunit biogenesis.
Volume: 17
Issue: 9
Pages: 5001-15
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Protein Domain
IPR005155 | UPF0113_PUA
Type: Domain
Description: This entry represents the PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain found in UPF0113 family members, such as ribosomal biogenesis factor NIP7 and hypothetical protein KD93 [, , ]. PUA domains are predicted to bind RNA molecules with complex folded structures []. NIP7 is required for efficient 60S ribosome subunit biogenesis and has been shown to interact with another essential nucleolar protein, Nop8p, and the exosome subunit Rrp43p. These three proteins are required for 60S subunit synthesis and may be part of a dynamic complex involved in this process.
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Protein Domain
IPR040598 | UPF0113_N
Type: Domain
Description: Protein KD93 is a NIP7 homologue and belongs to the UPF0113 family. The overall fold of KD93 consists of two interlinked α/β domains. The C-terminal domain resembles the PUA domain of some RNA modification enzymes, especially that of archaeosine tRNA-ribosyltransferase (ArcTGT), suggesting a possible molecular function related to RNA binding []. This entry represents the N-terminal, pre-PUA domain.
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Publication
14660641 | J:88987
First Author: Sekiguchi T
Year: 2004
Journal: J Biol Chem
Title: A novel human nucleolar protein, Nop132, binds to the G proteins, RRAG A/C/D.
Volume: 279
Issue: 9
Pages: 8343-50
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Publication
9891085 | -
First Author: Zanchin NI
Year: 1999
Journal: Mol Cell Biol
Title: Nip7p interacts with Nop8p, an essential nucleolar protein required for 60S ribosome biogenesis, and the exosome subunit Rrp43p.
Volume: 19
Issue: 2
Pages: 1518-25
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Protein
Q8BK35
Organism: Mus musculus/domesticus
Length: 484  
Fragment?: false
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Protein
Q9CV23
Organism: Mus musculus/domesticus
Length: 94  
Fragment?: true
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Protein
Q3USL3
Organism: Mus musculus/domesticus
Length: 110  
Fragment?: true
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Protein
Q8R126
Organism: Mus musculus/domesticus
Length: 471  
Fragment?: true
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Protein
Q8BTX4
Organism: Mus musculus/domesticus
Length: 484  
Fragment?: false
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Publication
10708517 | -
First Author: Smith JS
Year: 2000
Journal: Genomics
Title: A transcript map of the chromosome 19q-arm glioma tumor suppressor region.
Volume: 64
Issue: 1
Pages: 44-50
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Publication
15686447 | -
First Author: Sydorskyy Y
Year: 2005
Journal: Biochem J
Title: Nop53p is a novel nucleolar 60S ribosomal subunit biogenesis protein.
Volume: 388
Issue: Pt 3
Pages: 819-26
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Publication
16128814 | -
First Author: Granato DC
Year: 2005
Journal: FEBS J
Title: Nop53p, an essential nucleolar protein that interacts with Nop17p and Nip7p, is required for pre-rRNA processing in Saccharomyces cerevisiae.
Volume: 272
Issue: 17
Pages: 4450-63
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Protein Domain
IPR028589 | SPB1-like
Type: Family
Description: SPB1 is an adoMet-dependent rRNA methyltransferase required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit []. In Saccharomyces cerevisiae, it specifically methylates the guanosine in position 2922 of the 25S rRNA at the stage of 27S pre-rRNA maturation []. It interacts with the snoRNA-associated proteins Nop1 and Nop58 []. FTSJ3, SPB1 homologue in humans, is associated with NIP7 (involved in the biogenesis of 40S subunit) and functions in pre-rRNA processing [].
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Protein Domain
IPR011687 | Nop53/GLTSCR2
Type: Family
Description: This entry includes glioma tumour suppressor candidate region gene 2 protein (GSCR2) from humans and ribosome biogenesis protein Nop53 from budding yeasts. GSCR2 bears similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. Nop53 is a nucleolar protein that is involved in biogenesis of the 60S subunit of the ribosome []. It interacts with Nop17 and Nip7 and is required for pre-rRNA processing in Saccharomyces cerevisiae [].
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Publication
10556316 | -
First Author: Kressler D
Year: 1999
Journal: Nucleic Acids Res
Title: Spb1p is a putative methyltransferase required for 60S ribosomal subunit biogenesis in Saccharomyces cerevisiae.
Volume: 27
Issue: 23
Pages: 4598-608
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Publication
15546625 | -
First Author: Lapeyre B
Year: 2004
Journal: Mol Cell
Title: Spb1p-directed formation of Gm2922 in the ribosome catalytic center occurs at a late processing stage.
Volume: 16
Issue: 4
Pages: 663-9
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Publication
10648622 | -
First Author: Pintard L
Year: 2000
Journal: Mol Cell Biol
Title: Spb1p is a yeast nucleolar protein associated with Nop1p and Nop58p that is able to bind S-adenosyl-L-methionine in vitro.
Volume: 20
Issue: 4
Pages: 1370-81
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Publication
32668200 | -
First Author: Kater L
Year: 2020
Journal: Mol Cell
Title: Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis.
Volume: 79
Issue: 4
Pages: 615-628.e5
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Publication
29245012 | -
First Author: Kater L
Year: 2017
Journal: Cell
Title: Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes.
Volume: 171
Issue: 7
Pages: 1599-1610.e14
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Protein Domain
IPR024576 | rRNA_MeTfrase_Spb1_DUF3381
Type: Domain
Description: This uncharacterised domain is found in the central region of fungal SPB1 and mammalian homologue FTSJ3.SPB1 is an adoMet-dependent rRNA methyltransferase required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit []. In Saccharomyces cerevisiae, it specifically methylates the guanosine in position 2922 of the 25S rRNA at the stage of 27S pre-rRNA maturation []. It interacts with the snoRNA-associated proteins Nop1 and Nop58 []. FTSJ3, SPB1 homologue in humans, is associated with NIP7 (involved in the biogenesis of 40S subunit) and functions in pre-rRNA processing [].
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Protein Domain
IPR012920 | rRNA_MeTfrase_SPB1-like_C
Type: Domain
Description: This domain is found at the C terminus SPB1-like proteins. This domain interacts with the meandering tail of Erb1 and its removal is required to form the pre-mature inter-subunit surface of the Arx1/Nog2 particle [, ].SPB1 is an adoMet-dependent rRNA methyltransferase required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit []. In Saccharomyces cerevisiae, it specifically methylates the guanosine in position 2922 of the 25S rRNA at thestage of 27S pre-rRNA maturation []. It interacts with the snoRNA-associated proteins Nop1 and Nop58 []. FTSJ3, SPB1 homologue in humans, is associated with NIP7 (involved in the biogenesis of 40S subunit) and functions in pre-rRNA processing [].
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Protein
Q9DBE9
Organism: Mus musculus/domesticus
Length: 838  
Fragment?: false
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Publication
10093218 | -
First Author: Aravind L
Year: 1999
Journal: J Mol Evol
Title: Novel predicted RNA-binding domains associated with the translation machinery.
Volume: 48
Issue: 3
Pages: 291-302
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Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
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Publication
15489334 | -
First Author: Gerhard DS
Year: 2004
Journal: Genome Res
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
Volume: 14
Issue: 10B
Pages: 2121-7
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Publication
21183079 | J:292518
First Author: Huttlin EL
Year: 2010
Journal: Cell
Title: A tissue-specific atlas of mouse protein phosphorylation and expression.
Volume: 143
Issue: 7
Pages: 1174-89
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Publication
19468303 | -
First Author: Church DM
Year: 2009
Journal: PLoS Biol
Title: Lineage-specific biology revealed by a finished genome assembly of the mouse.
Volume: 7
Issue: 5
Pages: e1000112
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