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Search results 101 to 150 out of 150 for Med13

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Type Details Score
Publication
- | J:84900
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Journal: Database Download
Title: Integrating Computational Gene Models into the Mouse Genome Informatics (MGI) Database
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Publication
- | J:81858
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Title: Data Curation Using Mouse Genome Assembly
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Publication
17967808 | J:152068
First Author: Friedel RH
Year: 2007
Journal: Brief Funct Genomic Proteomic
Title: EUCOMM--the European conditional mouse mutagenesis program.
Volume: 6
Issue: 3
Pages: 180-5
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Publication
12520002 | J:91812
First Author: Stryke D
Year: 2003
Journal: Nucleic Acids Res
Title: BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.
Volume: 31
Issue: 1
Pages: 278-81
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Publication
- | J:148605
     
First Author: Wellcome Trust Sanger Institute
Year: 2009
Journal: MGI Direct Data Submission
Title: Alleles produced for the KOMP project by the Wellcome Trust Sanger Institute
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Publication
- | J:342605
       
First Author: GOA curators
Year: 2016
Title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
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Publication
- | J:85000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Title: MGI Sequence Curation Reference
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Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
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Publication
11217851 | J:65060
First Author: Kawai J
Year: 2001
Journal: Nature
Title: Functional annotation of a full-length mouse cDNA collection.
Volume: 409
Issue: 6821
Pages: 685-90
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Publication
- | J:23000
       
First Author: MGD Nomenclature Committee
Year: 1995
Title: Nomenclature Committee Use
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Publication
- | J:141210
     
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
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Publication
14610273 | J:86696
First Author: Zambrowicz BP
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
Volume: 100
Issue: 24
Pages: 14109-14
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Publication
21677750 | J:173534
First Author: Skarnes WC
Year: 2011
Journal: Nature
Title: A conditional knockout resource for the genome-wide study of mouse gene function.
Volume: 474
Issue: 7351
Pages: 337-42
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Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
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Publication
- | J:164563
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Title: Human to Mouse ISO GO annotation transfer
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Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
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Publication
- | J:57747
     
First Author: MGI Genome Annotation Group and UniGene Staff
Year: 2015
Journal: Database Download
Title: MGI-UniGene Interconnection Effort
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Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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GXD Expression
GXD Expression
   
Probe: MGI:7520146
Assay Type: Immunohistochemistry
Annotation Date: 2023-08-22
Strength: Present
Sex: Female
Emaps: EMAPS:3570528
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:7520149
Age: postnatal adult
Specimen Label: 6B Med13 f/f
Detected: true
Specimen Num: 4
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GXD Expression
GXD Expression
 
Probe: MGI:7520146
Assay Type: Immunohistochemistry
Annotation Date: 2023-08-22
Strength: Strong
Sex: Female
Emaps: EMAPS:3570528
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:7520149
Age: postnatal adult
Note: Expression upregulated 1.4-fold compared to control.
Specimen Label: 6B Med13 delta/delta
Detected: true
Specimen Num: 5
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HT Experiment
E-GEOD-35903 | Cardiac over-expression of Med13, non-cardiac tissue analysis
Series Id: GSE35903
Experiment Type: transcription profiling by array
Study Type: Baseline
Source: ArrayExpress
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Protein Domain
IPR041285 | MID_MedPIWI
Type: Domain
Description: MID domain of the medPIWI PIWI/Argonaute module. medPIWI is the core globular domain of the Med13 protein. Med13 is one member of the CDK8 subcomplex of the Mediator transcriptional coactivator complex. The medPIWI module in Med13 is predicted to bind double-stranded nucleic acids, triggering the experimentally-observed conformational switch in the CDK8 subcomplex which regulates the Mediator complex [].
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HT Experiment
GSE62450 | MED13cTg heart ventricles and epididymal fat
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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Protein
Q6JPI3
Organism: Mus musculus/domesticus
Length: 2207  
Fragment?: false
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Protein
A0A0J9YUA8
Organism: Mus musculus/domesticus
Length: 2216  
Fragment?: false
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Protein
E9QLJ3
Organism: Mus musculus/domesticus
Length: 2207  
Fragment?: false
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Publication
18451032 | -
First Author: Carrera I
Year: 2008
Journal: Proc Natl Acad Sci U S A
Title: Pygopus activates Wingless target gene transcription through the mediator complex subunits Med12 and Med13.
Volume: 105
Issue: 18
Pages: 6644-9
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Publication
17290221 | -
First Author: Loncle N
Year: 2007
Journal: EMBO J
Title: Distinct roles for Mediator Cdk8 module subunits in Drosophila development.
Volume: 26
Issue: 4
Pages: 1045-54
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Protein Domain
IPR021643 | Mediator_Med13_N
Type: Domain
Description: This entry represents the N-terminal domain of Med13.Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [, ]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med13 is part of the ancillary kinase module, together with Med12, CDK8 and CycC, which in yeast is implicated in transcriptional repression, though most of this activity is likely attributable to the CDK8 kinase. The large Med12 and Med13 proteins are required for specific developmental processes in Drosophila [], zebrafish, and Caenorhabditis elegans but their biochemical functions are not understood [].
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Protein
Q5SWW4
Organism: Mus musculus/domesticus
Length: 2171  
Fragment?: false
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Protein
Q3TDJ7
Organism: Mus musculus/domesticus
Length: 525  
Fragment?: true
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Protein
Q6GQS5
Organism: Mus musculus/domesticus
Length: 1879  
Fragment?: true
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Publication
12738880 | -
First Author: Samuelsen CO
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: TRAP230/ARC240 and TRAP240/ARC250 Mediator subunits are functionally conserved through evolution.
Volume: 100
Issue: 11
Pages: 6422-7
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Protein Domain
IPR009401 | Med13_C
Type: Domain
Description: This entry represents the C-terminal domain of Med13. This domain is also identified as an RNaseH domain of the medPIWI PIWI/Argonaute module. medPIWI is the core domain found in the Med13 protein. The medPIWI module in Med13 is predicted to bind double-stranded nucleic acids, triggering the experimentally-observed conformational switch in the CDK8 subcomplex which regulates the Mediator complex []. Med13 is a component of the SRB8-11 complex. The SRB8-11 complex is a regulatory module of the Mediator complex, which may be involved in the transcriptional repression of a subset of genes regulated by Mediator. It acts by inhibiting the association of the Mediator complex with RNA polymerase II to form the holoenzyme complex [].The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation.The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP.
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Publication
23758928 | -
 
First Author: Burroughs AM
Year: 2013
Journal: Biol Direct
Title: Two novel PIWI families: roles in inter-genomic conflicts in bacteria and Mediator-dependent modulation of transcription in eukaryotes.
Volume: 8
Pages: 13
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Publication
31029826 | J:278433
First Author: Pol CJ
Year: 2019
Journal: Biochim Biophys Acta Mol Basis Dis
Title: Cardiac myocyte KLF5 regulates body weight via alteration of cardiac FGF21.
Volume: 1865
Issue: 9
Pages: 2125-2137
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Publication
22949648 | J:190154
First Author: Carrer M
Year: 2012
Journal: Proc Natl Acad Sci U S A
Title: Control of mitochondrial metabolism and systemic energy homeostasis by microRNAs 378 and 378*.
Volume: 109
Issue: 38
Pages: 15330-5
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Publication
25422356 | J:232611
First Author: Baskin KK
Year: 2014
Journal: EMBO Mol Med
Title: MED13-dependent signaling from the heart confers leanness by enhancing metabolism in adipose tissue and liver.
Volume: 6
Issue: 12
Pages: 1610-21
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Publication
15175151 | J:90894
First Author: Bourbon HM
Year: 2004
Journal: Mol Cell
Title: A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II.
Volume: 14
Issue: 5
Pages: 553-7
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