Type |
Details |
Score |
GXD Expression |
Probe: |
MGI:4886316 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3284523 |
Pattern: |
Regionally restricted |
Stage: |
TS23 |
Assay Id: |
MGI:4945323 |
Age: |
embryonic day 15.5 |
Image: |
g00818 E15.5 |
Note: |
Expression was region specific and scattered. |
Specimen Label: |
g00818 E15.5 |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4886316 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3284528 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:4945323 |
Age: |
postnatal day 7 |
Image: |
g00818 P7 |
Note: |
Expression was region specific and scattered. |
Specimen Label: |
g00818 P7 |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4886316 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1689619 |
Pattern: |
Widespread |
Stage: |
TS19 |
Assay Id: |
MGI:4945323 |
Age: |
embryonic day 11.5 |
Image: |
g00818 E11.5 |
|
Specimen Label: |
g00818 E11.5 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6197083 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2018-09-07 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1684628 |
Pattern: |
Spotted |
Stage: |
TS28 |
Assay Id: |
MGI:6197098 |
Age: |
postnatal adult |
|
Note: |
Authors report speckled expression. |
Specimen Label: |
4C Liver WT |
Detected: |
true |
Specimen Num: |
7 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6197083 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2018-09-07 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1684628 |
Pattern: |
Spotted |
Stage: |
TS28 |
Assay Id: |
MGI:6197098 |
Age: |
postnatal adult |
|
Note: |
Authors report speckled expression. |
Specimen Label: |
4C Liver KO |
Detected: |
true |
Specimen Num: |
8 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4886316 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3267328 |
Pattern: |
Widespread |
Stage: |
TS28 |
Assay Id: |
MGI:4945323 |
Age: |
postnatal day 7 |
Image: |
g00818 P7 |
|
Specimen Label: |
g00818 P7 |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4886316 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3274128 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:4945323 |
Age: |
postnatal day 7 |
Image: |
g00818 P7 |
|
Specimen Label: |
g00818 P7 |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3615410 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-03-24 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1876827 |
Pattern: |
Not Specified |
Stage: |
TS27 |
Assay Id: |
MGI:3617604 |
Age: |
postnatal day 0 |
Image: |
P0 |
|
Specimen Label: |
P0 |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4886316 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1609219 |
Pattern: |
Widespread |
Stage: |
TS19 |
Assay Id: |
MGI:4945323 |
Age: |
embryonic day 11.5 |
Image: |
g00818 E11.5 |
|
Specimen Label: |
g00818 E11.5 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4886316 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3266028 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:4945323 |
Age: |
postnatal day 7 |
Image: |
g00818 P7 |
|
Specimen Label: |
g00818 P7 |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3615410 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-03-24 |
Strength: |
Ambiguous |
Sex: |
Not Specified |
Emaps: |
EMAPS:1679727 |
Pattern: |
Not Specified |
Stage: |
TS27 |
Assay Id: |
MGI:3617604 |
Age: |
postnatal day 0 |
Image: |
P0 |
Note: |
Authors indicate that there was either ubiquitous or background expression. |
Specimen Label: |
P0 |
|
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3615410 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-03-24 |
Strength: |
Ambiguous |
Sex: |
Not Specified |
Emaps: |
EMAPS:1754027 |
Pattern: |
Not Specified |
Stage: |
TS27 |
Assay Id: |
MGI:3617604 |
Age: |
postnatal day 0 |
Image: |
P0 |
Note: |
Authors indicate that there was either ubiquitous or background expression. |
Specimen Label: |
P0 |
|
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4886316 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1754028 |
Pattern: |
Widespread |
Stage: |
TS28 |
Assay Id: |
MGI:4945323 |
Age: |
postnatal day 7 |
Image: |
g00818 P7 |
|
Specimen Label: |
g00818 P7 |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3615410 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-03-24 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3280927 |
Pattern: |
Not Specified |
Stage: |
TS27 |
Assay Id: |
MGI:3617604 |
Age: |
postnatal day 0 |
Image: |
P0 |
|
Specimen Label: |
P0 |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4886316 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3280923 |
Pattern: |
Regionally restricted |
Stage: |
TS23 |
Assay Id: |
MGI:4945323 |
Age: |
embryonic day 15.5 |
Image: |
g00818 E15.5 |
|
Specimen Label: |
g00818 E15.5 |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4886316 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3280928 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:4945323 |
Age: |
postnatal day 7 |
Image: |
g00818 P7 |
Note: |
Expression was region specific and scattered. |
Specimen Label: |
g00818 P7 |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4886316 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3266523 |
Pattern: |
Regionally restricted |
Stage: |
TS23 |
Assay Id: |
MGI:4945323 |
Age: |
embryonic day 15.5 |
Image: |
g00818 E15.5 |
Note: |
Expression was region specific and scattered. |
Specimen Label: |
g00818 E15.5 |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6197083 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2018-09-07 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1702128 |
Pattern: |
Spotted |
Stage: |
TS28 |
Assay Id: |
MGI:6197098 |
Age: |
postnatal adult |
|
Note: |
Authors report speckled expression. |
Specimen Label: |
4C Stomach WT |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6197083 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2018-09-07 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1702128 |
Pattern: |
Spotted |
Stage: |
TS28 |
Assay Id: |
MGI:6197098 |
Age: |
postnatal adult |
|
Note: |
Authors report speckled expression. |
Specimen Label: |
4C Stomach KO |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3615410 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-03-24 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3267921 |
Pattern: |
Not Specified |
Stage: |
TS21 |
Assay Id: |
MGI:3617604 |
Age: |
embryonic day 13.5 |
Image: |
E13.5 |
|
Specimen Label: |
E13.5 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3615410 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-03-24 |
Strength: |
Ambiguous |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757721 |
Pattern: |
Not Specified |
Stage: |
TS21 |
Assay Id: |
MGI:3617604 |
Age: |
embryonic day 13.5 |
Image: |
E13.5 |
Note: |
Authors indicate that there was either ubiquitous or background expression. |
Specimen Label: |
E13.5 |
|
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3615410 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-03-24 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757727 |
|
Stage: |
TS27 |
Assay Id: |
MGI:3617604 |
Age: |
postnatal day 0 |
Image: |
P0 |
|
Specimen Label: |
P0 |
Detected: |
false |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4886316 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757723 |
Pattern: |
Regionally restricted |
Stage: |
TS23 |
Assay Id: |
MGI:4945323 |
Age: |
embryonic day 15.5 |
Image: |
g00818 E15.5 |
Note: |
Expression was region specific and scattered. |
Specimen Label: |
g00818 E15.5 |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4886316 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757728 |
Pattern: |
Widespread |
Stage: |
TS28 |
Assay Id: |
MGI:4945323 |
Age: |
postnatal day 7 |
Image: |
g00818 P7 |
|
Specimen Label: |
g00818 P7 |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
Publication |
First Author: |
Houlard M |
Year: |
2011 |
Journal: |
Cell Cycle |
Title: |
DNA-RNA hybrids contribute to the replication dependent genomic instability induced by Omcg1 deficiency. |
Volume: |
10 |
Issue: |
1 |
Pages: |
108-17 |
|
•
•
•
•
•
|
Publication |
First Author: |
Delestienne N |
Year: |
2010 |
Journal: |
FEBS J |
Title: |
The splicing factor ASF/SF2 is associated with TIA-1-related/TIA-1-containing ribonucleoproteic complexes and contributes to post-transcriptional repression of gene expression. |
Volume: |
277 |
Issue: |
11 |
Pages: |
2496-514 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lin S |
Year: |
2005 |
Journal: |
Mol Cell |
Title: |
Dephosphorylation-dependent sorting of SR splicing factors during mRNP maturation. |
Volume: |
20 |
Issue: |
3 |
Pages: |
413-25 |
|
•
•
•
•
•
|
Publication |
First Author: |
Huang SC |
Year: |
2009 |
Journal: |
Blood |
Title: |
Coupled transcription-splicing regulation of mutually exclusive splicing events at the 5' exons of protein 4.1R gene. |
Volume: |
114 |
Issue: |
19 |
Pages: |
4233-42 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zerbe LK |
Year: |
2004 |
Journal: |
Mol Carcinog |
Title: |
Relative amounts of antagonistic splicing factors, hnRNP A1 and ASF/SF2, change during neoplastic lung growth: implications for pre-mRNA processing. |
Volume: |
41 |
Issue: |
4 |
Pages: |
187-96 |
|
•
•
•
•
•
|
Publication |
First Author: |
Vecerová J |
Year: |
2004 |
Journal: |
Mol Biol Cell |
Title: |
Formation of nuclear splicing factor compartments is independent of lamins A/C. |
Volume: |
15 |
Issue: |
11 |
Pages: |
4904-10 |
|
•
•
•
•
•
|
Publication |
First Author: |
Nakagawa S |
Year: |
2012 |
Journal: |
RNA |
Title: |
Malat1 is not an essential component of nuclear speckles in mice. |
Volume: |
18 |
Issue: |
8 |
Pages: |
1487-99 |
|
•
•
•
•
•
|
Publication |
First Author: |
Liu Y |
Year: |
2017 |
Journal: |
Sci Rep |
Title: |
Angulin proteins ILDR1 and ILDR2 regulate alternative pre-mRNA splicing through binding to splicing factors TRA2A, TRA2B, or SRSF1. |
Volume: |
7 |
Issue: |
1 |
Pages: |
7466 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ayane M |
Year: |
1991 |
Journal: |
Nucleic Acids Res |
Title: |
A differentially expressed murine RNA encoding a protein with similarities to two types of nucleic acid binding motifs. |
Volume: |
19 |
Issue: |
6 |
Pages: |
1273-8 |
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•
•
•
•
•
|
Publication |
First Author: |
Xu X |
Year: |
2005 |
Journal: |
Cell |
Title: |
ASF/SF2-regulated CaMKIIdelta alternative splicing temporally reprograms excitation-contraction coupling in cardiac muscle. |
Volume: |
120 |
Issue: |
1 |
Pages: |
59-72 |
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•
•
•
•
•
|
Publication |
First Author: |
Zhong B |
Year: |
2012 |
Journal: |
Nat Immunol |
Title: |
Negative regulation of IL-17-mediated signaling and inflammation by the ubiquitin-specific protease USP25. |
Volume: |
13 |
Issue: |
11 |
Pages: |
1110-7 |
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•
•
•
•
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Publication |
First Author: |
Ji X |
Year: |
2013 |
Journal: |
Cell |
Title: |
SR proteins collaborate with 7SK and promoter-associated nascent RNA to release paused polymerase. |
Volume: |
153 |
Issue: |
4 |
Pages: |
855-68 |
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•
•
•
•
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Publication |
First Author: |
Wang J |
Year: |
2016 |
Journal: |
EMBO Rep |
Title: |
A novel long intergenic noncoding RNA indispensable for the cleavage of mouse two-cell embryos. |
Volume: |
17 |
Issue: |
10 |
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1452-1470 |
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•
•
•
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Publication |
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Pedrotti S |
Year: |
2012 |
Journal: |
Nucleic Acids Res |
Title: |
The RNA recognition motif protein RBM11 is a novel tissue-specific splicing regulator. |
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40 |
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3 |
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1021-32 |
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•
•
•
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Publication |
First Author: |
Cazalla D |
Year: |
2005 |
Journal: |
Mol Cell Biol |
Title: |
A novel SR-related protein is required for the second step of Pre-mRNA splicing. |
Volume: |
25 |
Issue: |
8 |
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2969-80 |
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•
•
•
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Publication |
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Herjan T |
Year: |
2018 |
Journal: |
Nat Immunol |
Title: |
IL-17-receptor-associated adaptor Act1 directly stabilizes mRNAs to mediate IL-17 inflammatory signaling. |
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19 |
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4 |
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354-365 |
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•
•
•
•
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Publication |
First Author: |
Sun D |
Year: |
2011 |
Journal: |
Nat Immunol |
Title: |
Treatment with IL-17 prolongs the half-life of chemokine CXCL1 mRNA via the adaptor TRAF5 and the splicing-regulatory factor SF2 (ASF). |
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12 |
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9 |
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853-60 |
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•
•
•
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Publication |
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Year: |
2005 |
Journal: |
J Cell Sci |
Title: |
RNA association and nucleocytoplasmic shuttling by ataxin-1. |
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118 |
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Pt 1 |
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233-42 |
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•
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Publication |
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Bermingham JR Jr |
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Genomics |
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Chromosomal localization of mouse and human genes encoding the splicing factors ASF/SF2 (SFRS1) and SC-35 (SFRS2). |
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1 |
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70-9 |
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Publication |
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Genes Dev |
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A rational nomenclature for serine/arginine-rich protein splicing factors (SR proteins). |
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24 |
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Publication |
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Year: |
2020 |
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Elife |
Title: |
Srsf10 and the minor spliceosome control tissue-specific and dynamic SR protein expression. |
Volume: |
9 |
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•
•
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Publication |
First Author: |
Kanadia RN |
Year: |
2008 |
Journal: |
Development |
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Temporal requirement of the alternative-splicing factor Sfrs1 for the survival of retinal neurons. |
Volume: |
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23 |
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3923-33 |
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•
•
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Publication |
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Kaput J |
Year: |
2004 |
Journal: |
Physiol Genomics |
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Identification of genes contributing to the obese yellow Avy phenotype: caloric restriction, genotype, diet x genotype interactions. |
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3 |
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316-24 |
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Publication |
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Year: |
2017 |
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Biochim Biophys Acta |
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Conserved expression of ultra-conserved noncoding RNA in mammalian nervous system. |
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1860 |
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12 |
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1159-1168 |
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•
•
•
•
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Publication |
First Author: |
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Year: |
2005 |
Journal: |
J Neurosci |
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Telencephalic embryonic subtractive sequences: a unique collection of neurodevelopmental genes. |
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7586-600 |
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•
•
•
•
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Publication |
First Author: |
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Year: |
2005 |
Journal: |
BMC Dev Biol |
Title: |
A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain. |
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5 |
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Pages: |
14 |
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•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2001 |
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Title: |
Gene Ontology Annotation by the MGI Curatorial Staff |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
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Title: |
FANTOM2 Data Curation in Mouse Genome Informatics |
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Publication |
First Author: |
Lennon G |
Year: |
1999 |
Journal: |
Database Download |
Title: |
WashU-HHMI Mouse EST Project |
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Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2014 |
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Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-rat orthologs |
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Publication |
First Author: |
Magdaleno S |
Year: |
2006 |
Journal: |
PLoS Biol |
Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
Volume: |
4 |
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4 |
Pages: |
e86 |
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Publication |
First Author: |
Wellcome Trust Sanger Institute |
Year: |
2009 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the KOMP project by the Wellcome Trust Sanger Institute |
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Publication |
First Author: |
Cyagen Biosciences Inc. |
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2022 |
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Title: |
Cyagen Biosciences Website. |
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Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
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Publication |
First Author: |
Zambrowicz BP |
Year: |
2003 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. |
Volume: |
100 |
Issue: |
24 |
Pages: |
14109-14 |
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI) |
Year: |
2008 |
Journal: |
Database Download |
Title: |
Mouse Gene Trap Data Load from dbGSS |
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Publication |
First Author: |
Skarnes WC |
Year: |
2011 |
Journal: |
Nature |
Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
Volume: |
474 |
Issue: |
7351 |
Pages: |
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Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
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Title: |
GemPharmatech Website. |
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Publication |
First Author: |
AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators |
Year: |
2011 |
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Title: |
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity |
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Publication |
First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
Year: |
2004 |
Journal: |
Database Release |
Title: |
Mouse T31 Radiation Hybrid Data Load |
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Publication |
First Author: |
Hansen GM |
Year: |
2008 |
Journal: |
Genome Res |
Title: |
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. |
Volume: |
18 |
Issue: |
10 |
Pages: |
1670-9 |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2003 |
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Title: |
MGI Sequence Curation Reference |
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Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
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Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
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Publication |
First Author: |
Diez-Roux G |
Year: |
2011 |
Journal: |
PLoS Biol |
Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Volume: |
9 |
Issue: |
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Pages: |
e1000582 |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
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Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
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Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
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Title: |
Annotation inferences using phylogenetic trees |
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Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
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Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
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First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
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Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
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Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
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Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
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Publication |
First Author: |
Kawai J |
Year: |
2001 |
Journal: |
Nature |
Title: |
Functional annotation of a full-length mouse cDNA collection. |
Volume: |
409 |
Issue: |
6821 |
Pages: |
685-90 |
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Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
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Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping |
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Publication |
First Author: |
Okazaki Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
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Gene |
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Gene |
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Publication |
First Author: |
Wagner KD |
Year: |
2019 |
Journal: |
Cells |
Title: |
Altered VEGF Splicing Isoform Balance in Tumor Endothelium Involves Activation of Splicing Factors Srpk1 and Srsf1 by the Wilms' Tumor Suppressor Wt1. |
Volume: |
8 |
Issue: |
1 |
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DO Term |
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Publication |
First Author: |
Gonçalves V |
Year: |
2015 |
Journal: |
Biomed Res Int |
Title: |
Posttranscriptional Regulation of Splicing Factor SRSF1 and Its Role in Cancer Cell Biology. |
Volume: |
2015 |
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Pages: |
287048 |
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Protein Domain |
Type: |
Domain |
Description: |
This entry represents the RNA recognition motif 1 (RRM1) of SRSF1 (also knwon as ASF/SF2). SRSF1 is a member of the SR (serine/arginine) protein family of splicing regulators. Besides mRNA splicing, it is also involved in regulating mRNA transcription, stability and nuclear export, NMD, and translation, as well as protein sumoylation. It has been identified as a proto-oncogene. SRSF1 contains two RRMs, which are required for efficient RNA binding and splicing []. The SR protein family is a group of mRNA metabolism regulators. Its members have a modular domain with one or two RNA-recognition motifs (RRMs) and a C-terminal RS domain comprising multiple Arg-Ser dipeptide repeats. There are 12 human SR proteins []. |
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Publication |
First Author: |
Das S |
Year: |
2014 |
Journal: |
Mol Cancer Res |
Title: |
Emerging functions of SRSF1, splicing factor and oncoprotein, in RNA metabolism and cancer. |
Volume: |
12 |
Issue: |
9 |
Pages: |
1195-204 |
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Publication |
First Author: |
Pradeepa MM |
Year: |
2012 |
Journal: |
PLoS Genet |
Title: |
Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing. |
Volume: |
8 |
Issue: |
5 |
Pages: |
e1002717 |
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Protein Domain |
Type: |
Family |
Description: |
Nuclear speckles are subnuclear storage sites containing pre-mRNA splicing machinery. Nuclear speckle splicing regulatory protein 1 (Nsrp1), also known as NSRP70, is a nuclear speckle-related protein that mediates alternative splice site selection, targeting several pre-mRNAs []. It contains an N-terminal coiled-coil domain that is critical not only for self-oligomerization but also for splicing activity. It interacts physically with two SR (serine/arginine) proteins, SRSF1 and SRSF2, and reverses their splicing activity in terms of CD44 exon v5 as exon exclusion []. |
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Publication |
First Author: |
Howard JM |
Year: |
2015 |
Journal: |
Wiley Interdiscip Rev RNA |
Title: |
The RNAissance family: SR proteins as multifaceted regulators of gene expression. |
Volume: |
6 |
Issue: |
1 |
Pages: |
93-110 |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
119
|
Fragment?: |
true |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
85
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Fragment?: |
true |
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•
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
78
|
Fragment?: |
true |
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Publication |
First Author: |
Zhou H |
Year: |
2017 |
Journal: |
Elife |
Title: |
IRAK2 directs stimulus-dependent nuclear export of inflammatory mRNAs. |
Volume: |
6 |
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•
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•
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Publication |
First Author: |
Hall AE |
Year: |
2022 |
Journal: |
Nat Commun |
Title: |
RNA splicing is a key mediator of tumour cell plasticity and a therapeutic vulnerability in colorectal cancer. |
Volume: |
13 |
Issue: |
1 |
Pages: |
2791 |
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•
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•
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Publication |
First Author: |
Farshadyeganeh P |
Year: |
2023 |
Journal: |
iScience |
Title: |
Splicing regulation of GFPT1 muscle-specific isoform and its roles in glucose metabolisms and neuromuscular junction. |
Volume: |
26 |
Issue: |
10 |
Pages: |
107746 |
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