Type |
Details |
Score |
Allele |
Name: |
regulatory region 108735; endonuclease-mediated mutation 1, Axel Visel |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Modified regulatory region |
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•
•
•
•
|
Allele |
Name: |
deletion, Chr 5, Axel Visel 1 |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Modified regulatory region |
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•
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•
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HT Experiment |
|
Experiment Type: |
RNA-Seq |
Study Type: |
Baseline |
Source: |
GEO |
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•
•
•
•
|
Publication |
First Author: |
Wakahara T |
Year: |
2007 |
Journal: |
Dev Biol |
Title: |
Fibin, a novel secreted lateral plate mesoderm signal, is essential for pectoral fin bud initiation in zebrafish. |
Volume: |
303 |
Issue: |
2 |
Pages: |
527-35 |
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•
•
•
•
|
Allele |
Name: |
regulatory region 51; endonuclease-mediated mutation 1, Axel Visel |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Modified regulatory region |
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•
•
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•
|
Allele |
Name: |
regulatory region 55; endonuclease-mediated mutation 1, Axel Visel |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Modified regulatory region |
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•
•
•
•
|
Strain |
Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
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•
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Strain |
Attribute String: |
coisogenic, mutant strain, endonuclease-mediated mutation |
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•
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Genotype |
Symbol: |
Rr426/Rr426 |
Background: |
FVB-Rr426 |
Zygosity: |
hm |
Has Mutant Allele: |
true |
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•
•
•
•
•
|
Genotype |
Symbol: |
Del(5Rr426-Rr108735)1Axvi/Del(5Rr426-Rr108735)1Axvi |
Background: |
FVB-Del(5Rr426-Rr108735)1Axvi |
Zygosity: |
hm |
Has Mutant Allele: |
true |
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•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
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•
•
•
•
|
Strain |
Attribute String: |
mutant strain, coisogenic, endonuclease-mediated mutation |
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•
•
•
•
|
Strain |
Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
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•
•
•
•
|
Strain |
Attribute String: |
mutant strain, coisogenic, endonuclease-mediated mutation |
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•
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•
|
Allele |
Name: |
transgene insertion 1, Mona Nemer |
Allele Type: |
Transgenic |
Attribute String: |
Inserted expressed sequence |
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•
•
•
•
•
|
Genotype |
Symbol: |
Rr51/Rr51 |
Background: |
FVB-Rr51 |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Rr55/Rr55 |
Background: |
FVB-Rr55 |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
217
|
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Lakner J |
Year: |
2011 |
Journal: |
BMC Biochem |
Title: |
Characterization of the expression, promoter activity and molecular architecture of fibin. |
Volume: |
12 |
|
Pages: |
26 |
|
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•
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•
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Protein Domain |
Type: |
Family |
Description: |
Fin bud initiation factor (Fibin) forms disulfide-linked homodimers. It seems to also exist as monomers []. It localises in endoplasmic reticulum and golgi apparatus [, ]. In zebrafish, Fibin is essential for the initiation of pectoral fin bud formation. It potentially acts downstream of retinoic acid and Wnt signaling and is required for tbx5 expression in the lateral plate mesoderm of presumptive pectoral fin bud regions []. In mammals is expressed in cerebellum, skeletal muscle and other embryonic and adult tissues, suggesting a relevant role during embryogenesis and adult life []. |
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HT Experiment |
Series Id: |
GSE77576 |
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
HT Experiment |
|
Experiment Type: |
RNA-Seq |
Study Type: |
Baseline |
Source: |
GEO |
|
•
•
•
•
•
|
Publication |
First Author: |
Smith J |
Year: |
1997 |
Journal: |
Curr Opin Genet Dev |
Title: |
Brachyury and the T-box genes. |
Volume: |
7 |
Issue: |
4 |
Pages: |
474-80 |
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
GSE26191 |
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
ArrayExpress |
|
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•
•
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•
|
Publication |
First Author: |
Böhm J |
Year: |
2007 |
Journal: |
Biochem Biophys Res Commun |
Title: |
Synergistic cooperation of Sall4 and Cyclin D1 in transcriptional repression. |
Volume: |
356 |
Issue: |
3 |
Pages: |
773-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Sirbu IO |
Year: |
2008 |
Journal: |
Dev Dyn |
Title: |
Retinoic acid controls heart anteroposterior patterning by down-regulating Isl1 through the Fgf8 pathway. |
Volume: |
237 |
Issue: |
6 |
Pages: |
1627-35 |
|
•
•
•
•
•
|
Publication |
First Author: |
Muraoka N |
Year: |
2019 |
Journal: |
Nat Commun |
Title: |
Role of cyclooxygenase-2-mediated prostaglandin E2-prostaglandin E receptor 4 signaling in cardiac reprogramming. |
Volume: |
10 |
Issue: |
1 |
Pages: |
674 |
|
•
•
•
•
•
|
Publication |
First Author: |
Meilhac SM |
Year: |
2004 |
Journal: |
J Cell Biol |
Title: |
Oriented clonal cell growth in the developing mouse myocardium underlies cardiac morphogenesis. |
Volume: |
164 |
Issue: |
1 |
Pages: |
97-109 |
|
•
•
•
•
•
|
Publication |
First Author: |
Fernandez-Perez A |
Year: |
2019 |
Journal: |
Cell Rep |
Title: |
Hand2 Selectively Reorganizes Chromatin Accessibility to Induce Pacemaker-like Transcriptional Reprogramming. |
Volume: |
27 |
Issue: |
8 |
Pages: |
2354-2369.e7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bamshad M |
Year: |
1997 |
Journal: |
Nat Genet |
Title: |
Mutations in human TBX3 alter limb, apocrine and genital development in ulnar-mammary syndrome. |
Volume: |
16 |
Issue: |
3 |
Pages: |
311-5 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yu Q |
Year: |
2004 |
Journal: |
Development |
Title: |
ENU induced mutations causing congenital cardiovascular anomalies. |
Volume: |
131 |
Issue: |
24 |
Pages: |
6211-23 |
|
•
•
•
•
•
|
Publication |
First Author: |
Halilagic A |
Year: |
2007 |
Journal: |
Dev Biol |
Title: |
Retinoids control anterior and dorsal properties in the developing forebrain. |
Volume: |
303 |
Issue: |
1 |
Pages: |
362-75 |
|
•
•
•
•
•
|
Publication |
First Author: |
Baurand A |
Year: |
2007 |
Journal: |
Circ Res |
Title: |
Beta-catenin downregulation is required for adaptive cardiac remodeling. |
Volume: |
100 |
Issue: |
9 |
Pages: |
1353-62 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zelarayán LC |
Year: |
2008 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Beta-Catenin downregulation attenuates ischemic cardiac remodeling through enhanced resident precursor cell differentiation. |
Volume: |
105 |
Issue: |
50 |
Pages: |
19762-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Nam YJ |
Year: |
2014 |
Journal: |
Development |
Title: |
Induction of diverse cardiac cell types by reprogramming fibroblasts with cardiac transcription factors. |
Volume: |
141 |
Issue: |
22 |
Pages: |
4267-78 |
|
•
•
•
•
•
|
Publication |
First Author: |
van Weerd JH |
Year: |
2014 |
Journal: |
Circ Res |
Title: |
A large permissive regulatory domain exclusively controls Tbx3 expression in the cardiac conduction system. |
Volume: |
115 |
Issue: |
4 |
Pages: |
432-41 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhao L |
Year: |
2010 |
Journal: |
Mech Dev |
Title: |
Sonic hedgehog is involved in formation of the ventral optic cup by limiting Bmp4 expression to the dorsal domain. |
Volume: |
127 |
Issue: |
1-2 |
Pages: |
62-72 |
|
•
•
•
•
•
|
Publication |
First Author: |
Muraoka N |
Year: |
2014 |
Journal: |
EMBO J |
Title: |
MiR-133 promotes cardiac reprogramming by directly repressing Snai1 and silencing fibroblast signatures. |
Volume: |
33 |
Issue: |
14 |
Pages: |
1565-81 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hara M |
Year: |
2015 |
Journal: |
Sci Rep |
Title: |
Disturbance of cardiac gene expression and cardiomyocyte structure predisposes Mecp2-null mice to arrhythmias. |
Volume: |
5 |
|
Pages: |
11204 |
|
•
•
•
•
•
|
Publication |
First Author: |
Murakami M |
Year: |
2005 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
A WW domain protein TAZ is a critical coactivator for TBX5, a transcription factor implicated in Holt-Oram syndrome. |
Volume: |
102 |
Issue: |
50 |
Pages: |
18034-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Garg V |
Year: |
2003 |
Journal: |
Nature |
Title: |
GATA4 mutations cause human congenital heart defects and reveal an interaction with TBX5. |
Volume: |
424 |
Issue: |
6947 |
Pages: |
443-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Li X |
Year: |
2009 |
Journal: |
Am J Physiol Heart Circ Physiol |
Title: |
Na+/H+ exchanger isoform 1 facilitates cardiomyocyte embryonic stem cell differentiation. |
Volume: |
296 |
Issue: |
1 |
Pages: |
H159-70 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yi CH |
Year: |
1999 |
Journal: |
Genomics |
Title: |
Identification, mapping, and phylogenomic analysis of four new human members of the T-box gene family: EOMES, TBX6, TBX18, and TBX19. |
Volume: |
55 |
Issue: |
1 |
Pages: |
10-20 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yu Z |
Year: |
2013 |
Journal: |
PLoS One |
Title: |
Islet-1 may function as an assistant factor for histone acetylation and regulation of cardiac development-related transcription factor Mef2c expression. |
Volume: |
8 |
Issue: |
10 |
Pages: |
e77690 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kim J |
Year: |
2016 |
Journal: |
Cancer Res |
Title: |
Ablation of miR-10b Suppresses Oncogene-Induced Mammary Tumorigenesis and Metastasis and Reactivates Tumor-Suppressive Pathways. |
Volume: |
76 |
Issue: |
21 |
Pages: |
6424-6435 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mohamed TM |
Year: |
2017 |
Journal: |
Circulation |
Title: |
Chemical Enhancement of In Vitro and In Vivo Direct Cardiac Reprogramming. |
Volume: |
135 |
Issue: |
10 |
Pages: |
978-995 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hori Y |
Year: |
2018 |
Journal: |
BMC Genomics |
Title: |
Important cardiac transcription factor genes are accompanied by bidirectional long non-coding RNAs. |
Volume: |
19 |
Issue: |
1 |
Pages: |
967 |
|
•
•
•
•
•
|
Publication |
First Author: |
Watanabe Y |
Year: |
2023 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Hey2 enhancer activity defines unipotent progenitors for left ventricular cardiomyocytes in juxta-cardiac field of early mouse embryo. |
Volume: |
120 |
Issue: |
37 |
Pages: |
e2307658120 |
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•
•
•
•
•
|
Publication |
First Author: |
Kisanuki YY |
Year: |
2001 |
Journal: |
Dev Biol |
Title: |
Tie2-Cre transgenic mice: a new model for endothelial cell-lineage analysis in vivo. |
Volume: |
230 |
Issue: |
2 |
Pages: |
230-42 |
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•
•
•
•
•
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Publication |
First Author: |
Chiplunkar AR |
Year: |
2013 |
Journal: |
PLoS One |
Title: |
Krüppel-like factor 2 is required for normal mouse cardiac development. |
Volume: |
8 |
Issue: |
2 |
Pages: |
e54891 |
|
•
•
•
•
•
|
Publication |
First Author: |
Itou J |
Year: |
2012 |
Journal: |
Development |
Title: |
Islet1 regulates establishment of the posterior hindlimb field upstream of the Hand2-Shh morphoregulatory gene network in mouse embryos. |
Volume: |
139 |
Issue: |
9 |
Pages: |
1620-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Qiao Y |
Year: |
2017 |
Journal: |
Circ Res |
Title: |
Transient Notch Activation Induces Long-Term Gene Expression Changes Leading to Sick Sinus Syndrome in Mice. |
Volume: |
121 |
Issue: |
5 |
Pages: |
549-563 |
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•
•
•
•
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Publication |
First Author: |
Margulies EH |
Year: |
2001 |
Journal: |
Genome Res |
Title: |
A comparative molecular analysis of developing mouse forelimbs and hindlimbs using serial analysis of gene expression (SAGE). |
Volume: |
11 |
Issue: |
10 |
Pages: |
1686-98 |
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•
•
•
•
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Publication |
First Author: |
Church DM |
Year: |
2009 |
Journal: |
PLoS Biol |
Title: |
Lineage-specific biology revealed by a finished genome assembly of the mouse. |
Volume: |
7 |
Issue: |
5 |
Pages: |
e1000112 |
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