Type |
Details |
Score |
HT Experiment |
|
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
HT Sample |
Organism Name: |
mouse, laboratory |
Sex: |
Male |
Age: |
postnatal adult |
Stage: |
28 |
Structure . Name: |
primary spermatocyte |
Notes: |
pachytene/diplotene stage |
Curation Status: |
Curated |
|
•
•
•
•
•
|
HT Sample |
Organism Name: |
mouse, laboratory |
Sex: |
Male |
Age: |
postnatal adult |
Stage: |
28 |
Structure . Name: |
primary spermatocyte |
Notes: |
pachytene/diplotene stage |
Curation Status: |
Curated |
|
•
•
•
•
•
|
HT Sample |
Organism Name: |
mouse, laboratory |
Sex: |
Male |
Age: |
postnatal adult |
Stage: |
28 |
Structure . Name: |
primary spermatocyte |
Notes: |
pachytene/diplotene stage |
Curation Status: |
Curated |
|
•
•
•
•
•
|
HT Sample |
Organism Name: |
mouse, laboratory |
Sex: |
Female |
Age: |
postnatal week 3-5 |
Stage: |
28 |
Structure . Name: |
primary oocyte |
Notes: |
germinal vesicle stage |
Curation Status: |
Curated |
|
•
•
•
•
•
|
HT Sample |
Organism Name: |
mouse, laboratory |
Sex: |
Female |
Age: |
postnatal week 3-5 |
Stage: |
28 |
Structure . Name: |
primary oocyte |
Notes: |
germinal vesicle stage |
Curation Status: |
Curated |
|
•
•
•
•
•
|
HT Sample |
Organism Name: |
mouse, laboratory |
Sex: |
Female |
Age: |
postnatal week 3-5 |
Stage: |
28 |
Structure . Name: |
primary oocyte |
Notes: |
germinal vesicle stage |
Curation Status: |
Curated |
|
•
•
•
•
•
|
HT Experiment |
|
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1269
|
Fragment?: |
false |
|
•
•
•
•
•
|
HT Experiment |
|
Experiment Type: |
RNA-Seq |
Study Type: |
WT vs. Mutant |
Source: |
GEO |
|
•
•
•
•
•
|
Publication |
First Author: |
Kadlec J |
Year: |
2004 |
Journal: |
Nat Struct Mol Biol |
Title: |
The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3. |
Volume: |
11 |
Issue: |
4 |
Pages: |
330-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chamieh H |
Year: |
2008 |
Journal: |
Nat Struct Mol Biol |
Title: |
NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity. |
Volume: |
15 |
Issue: |
1 |
Pages: |
85-93 |
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); wild type |
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Serin G |
Year: |
2001 |
Journal: |
Mol Cell Biol |
Title: |
Identification and characterization of human orthologues to Saccharomyces cerevisiae Upf2 protein and Upf3 protein (Caenorhabditis elegans SMG-4). |
Volume: |
21 |
Issue: |
1 |
Pages: |
209-23 |
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST23276, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); targeted mutation 1e, Helmholtz Zentrum Muenchen GmbH |
Allele Type: |
Targeted |
Attribute String: |
Null/knockout, Reporter |
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST112106, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST123052, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST216958, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap XF042, BayGenomics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST117307, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST100587, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST56720, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap EUCE0089d11, Helmholtz Zentrum Muenchen GmbH |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST116634, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST308453, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST458991, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST1729, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); targeted mutation 1, Bo Torben Porse |
Allele Type: |
Targeted |
Attribute String: |
Conditional ready, No functional change |
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST219025, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap EUCJ0022h09, Helmholtz Zentrum Muenchen GmbH |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST169414, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap A20000, German Gene Trap Consortium |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); endonuclease-mediated mutation 2, Cyagen Biosciences |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Conditional ready, No functional change |
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap P062E01, German Gene Trap Consortium |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap CSE040, BayGenomics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap D129D01, German Gene Trap Consortium |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST279983, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); targeted mutation 1a, Helmholtz Zentrum Muenchen GmbH |
Allele Type: |
Targeted |
Attribute String: |
Conditional ready, Null/knockout, Reporter |
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap E077D10, German Gene Trap Consortium |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST206279, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap E129D01, German Gene Trap Consortium |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST303558, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap EUCJ0144c09, Helmholtz Zentrum Muenchen GmbH |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap CSE032, BayGenomics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST291658, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST374191, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap E085B04, German Gene Trap Consortium |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST55804, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST199282, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST396993, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST275663, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap E144B02, German Gene Trap Consortium |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST67267, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST208792, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap M123A12, German Gene Trap Consortium |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap P068C10, German Gene Trap Consortium |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST67670, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST276960, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST220857, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST230828, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST111408, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST201236, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); targeted mutation 1.1, Bo Torben Porse |
Allele Type: |
Targeted |
Attribute String: |
Null/knockout |
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap OST279012, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap IST14664F12, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap IST14592H5, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap 271A6, Centre for Modeling Human Disease |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap IST14740B11, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap IST13373A7, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap IST13930C8, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
UPF2 regulator of nonsense transcripts homolog (yeast); gene trap IST14707B5, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Genotype |
Symbol: |
Upf2/Upf2 |
Background: |
involves: 129P2/OlaHsd |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Upf2/Upf2 |
Background: |
involves: 129P2/OlaHsd * C57BL/6 |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Upf2/Upf2 |
Background: |
involves: 129P2/OlaHsd * C57BL/6 * SJL |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Upf2/Upf2 Lyz2/? |
Background: |
involves: 129P2/OlaHsd * C57BL/6 * CBA |
Zygosity: |
cn |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Tg(Lck-cre)548Jxm/? Upf2/Upf2 |
Background: |
involves: 129P2/OlaHsd * C57BL/6 * CBA |
Zygosity: |
cn |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Upf2/Upf2 Tg(Mx1-cre)1Cgn/? |
Background: |
involves: 129P2/OlaHsd * C57BL/6 * CBA |
Zygosity: |
cn |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Upf2/Upf2 Tg(Atoh1-cre)1Bfri/? |
Background: |
involves: 129P2/OlaHsd * C57BL/6 * CBA |
Zygosity: |
cn |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Upf2/Upf2 Tg(Alb1-cre)7Gsc/? |
Background: |
involves: 129P2/OlaHsd * C57BL/6 * FVB/N |
Zygosity: |
cn |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Upf2/Upf2 Tg(Stra8-icre)1Reb/? |
Background: |
involves: 129P2/OlaHsd * C57BL/6N * FVB/NJ |
Zygosity: |
cn |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Upf2/Upf2 Tg(Zp3-cre)93Knw/? |
Background: |
involves: 129P2/OlaHsd * C57BL/6J * C57BL/6N |
Zygosity: |
cn |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
This entry includes Nmd2 from yeasts and UPF2 from animals. They are involved in the nonsense-mediated mRNA decay (NMD) pathway [, ]. In the human UPF complex (composed of UPF1/2/3), UPF2 and UPF3b cooperatively stimulate both ATPase and RNA helicase activities of UPF1 []. |
|
•
•
•
•
•
|
Publication |
First Author: |
Chakrabarti S |
Year: |
2011 |
Journal: |
Mol Cell |
Title: |
Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2. |
Volume: |
41 |
Issue: |
6 |
Pages: |
693-703 |
|
•
•
•
•
•
|
Publication |
First Author: |
Clerici M |
Year: |
2009 |
Journal: |
EMBO J |
Title: |
Unusual bipartite mode of interaction between the nonsense-mediated decay factors, UPF1 and UPF2. |
Volume: |
28 |
Issue: |
15 |
Pages: |
2293-306 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. Together with UPF2 and UPF3, forms a surveillance complex, in which UPF2 acts as a bridge between UPF1 and UPF3. UPF2 and UPF3 are nonenzymatic components of the complex that stimulate the activity of UPF1 []. UPF1 has a N-terminal cysteine/histidine-rich zinc-binding domain (CH/ZBD), a regulatory 1B domain, followed by a helicase core that belongs to superfamily 1 (SF1).This is 1B domain of UPF1 which has a regulatory role. It suffers conformational changes from an inhibitory state to a transition-state complex that modulate RNA binding [, ]. |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Upf2/Upf2 En1/En1<+> |
Background: |
involves: 129P2/OlaHsd * 129S1/Sv * 129X1/SvJ |
Zygosity: |
cn |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Upf2/Upf2<+> |
Background: |
involves: 129P2/OlaHsd * C57BL/6 |
Zygosity: |
ht |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Kadlec J |
Year: |
2006 |
Journal: |
RNA |
Title: |
Crystal structure of the UPF2-interacting domain of nonsense-mediated mRNA decay factor UPF1. |
Volume: |
12 |
Issue: |
10 |
Pages: |
1817-24 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. Together with UPF2 and UPF3, forms a surveillance complex, in which UPF2 acts as a bridge between UPF1 and UPF3. UPF2 and UPF3 are nonenzymatic components of the complex that stimulate the activity of UPF1 []. UPF1 has a N-terminal cysteine/histidine-rich zinc-binding domain (CH/ZBD), a regulatory 1B domain, followed by a helicase core that belongs to superfamily 1 (SF1).This is the N-terminal CH/ZBD which contains 3 zinc binding motifs that interacts with UPF2 and it also has a cis-inhibitory effect on the ATPase activity. After binding to UPF2, the CH/ZBD suffers a large conformational change that causes the catalytic helicase domain to bind RNA less extensively and triggering its helicase activity [, ]. |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
260
|
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Aronoff R |
Year: |
2001 |
Journal: |
Gene |
Title: |
Molecular identification of smg-4, required for mRNA surveillance in C. elegans. |
Volume: |
268 |
Issue: |
1-2 |
Pages: |
153-64 |
|
•
•
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Publication |
First Author: |
Gehring NH |
Year: |
2003 |
Journal: |
Mol Cell |
Title: |
Y14 and hUpf3b form an NMD-activating complex. |
Volume: |
11 |
Issue: |
4 |
Pages: |
939-49 |
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Publication |
First Author: |
Lykke-Andersen J |
Year: |
2004 |
Journal: |
Nat Struct Mol Biol |
Title: |
Making structural sense of nonsense-mediated decay. |
Volume: |
11 |
Issue: |
4 |
Pages: |
305-6 |
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Protein Domain |
Type: |
Domain |
Description: |
Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This entry contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the β-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules []. |
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Genotype |
Symbol: |
Upf2/Upf2 Tg(Stra8-icre)1Reb/? |
Background: |
involves: 129P2/OlaHsd * C57BL/6J * FVB/NJ |
Zygosity: |
cn |
Has Mutant Allele: |
true |
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Genotype |
Symbol: |
Upf2/Upf2 Plekha5/Plekha5<+> |
Background: |
involves: 129P2/OlaHsd * C57BL/6 * SJL |
Zygosity: |
cn |
Has Mutant Allele: |
true |
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Publication |
First Author: |
He F |
Year: |
1997 |
Journal: |
Mol Cell Biol |
Title: |
Upf1p, Nmd2p, and Upf3p are interacting components of the yeast nonsense-mediated mRNA decay pathway. |
Volume: |
17 |
Issue: |
3 |
Pages: |
1580-94 |
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Publication |
First Author: |
Le Hir H |
Year: |
2001 |
Journal: |
EMBO J |
Title: |
The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay. |
Volume: |
20 |
Issue: |
17 |
Pages: |
4987-97 |
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