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Search results 101 to 175 out of 175 for Ccdc39

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Type Details Score
GXD Expression
GXD Expression
Probe: MGI:4423308
Assay Type: RNA in situ
Annotation Date: 2018-03-27
Strength: Present
Sex: Not Specified
Emaps: EMAPS:3267422
Pattern: Regionally restricted
Stage: TS22
Assay Id: MGI:6147577
Age: embryonic day 14.5
Image: 4A
Note: Expression caudal and ventral ependymal cell layers.
Specimen Label: 4A
Detected: true
Specimen Num: 1
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GXD Expression
GXD Expression
 
Probe: MGI:6147541
Assay Type: Immunohistochemistry
Annotation Date: 2018-03-27
Strength: Present
Sex: Not Specified
Emaps: EMAPS:3274226
Pattern: Not Specified
Stage: TS26
Assay Id: MGI:6147580
Age: embryonic day 18.5
Image: S3B bottom right
Specimen Label: S3B bottom right
Detected: true
Specimen Num: 26
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GXD Expression
GXD Expression
 
Probe: MGI:4423308
Assay Type: RNA in situ
Annotation Date: 2018-03-27
Strength: Present
Sex: Not Specified
Emaps: EMAPS:3274222
Pattern: Not Specified
Stage: TS22
Assay Id: MGI:6147577
Age: embryonic day 14.5
Image: 4A
Specimen Label: 4A
Detected: true
Specimen Num: 1
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GXD Expression
GXD Expression
   
Assay Type: In situ reporter (knock in)
Annotation Date: 2021-04-16
Strength: Present
Sex: Male
Emaps: EMAPS:1929028
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:6691312
Age: postnatal adult
Image: UC Davis_1875991
Specimen Label: UC Davis_1875991
Detected: true
Specimen Num: 18
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GXD Expression
GXD Expression
   
Assay Type: In situ reporter (knock in)
Annotation Date: 2021-04-16
Strength: Present
Sex: Male
Emaps: EMAPS:1929028
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:6691312
Age: postnatal adult
Image: UC Davis_1875992
Specimen Label: UC Davis_1875992
Detected: true
Specimen Num: 19
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GXD Expression
GXD Expression
   
Assay Type: In situ reporter (knock in)
Annotation Date: 2021-04-16
Strength: Present
Sex: Female
Emaps: EMAPS:3276428
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:6691312
Age: postnatal adult
Image: UC Davis_1875997
Specimen Label: UC Davis_1875997
Detected: true
Specimen Num: 3
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GXD Expression
GXD Expression
   
Assay Type: In situ reporter (knock in)
Annotation Date: 2021-04-16
Strength: Present
Sex: Male
Emaps: EMAPS:3276428
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:6691312
Age: postnatal adult
Image: UC Davis_1875982
Specimen Label: UC Davis_1875982
Detected: true
Specimen Num: 12
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GXD Expression
GXD Expression
   
Assay Type: In situ reporter (knock in)
Annotation Date: 2021-04-16
Strength: Present
Sex: Female
Emaps: EMAPS:1757728
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:6691312
Age: postnatal adult
Image: UC Davis_1875998
Specimen Label: UC Davis_1875998
Detected: true
Specimen Num: 4
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GXD Expression
GXD Expression
   
Assay Type: In situ reporter (knock in)
Annotation Date: 2021-04-16
Strength: Present
Sex: Male
Emaps: EMAPS:1757728
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:6691312
Age: postnatal adult
Image: UC Davis_1875983
Specimen Label: UC Davis_1875983
Detected: true
Specimen Num: 13
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GXD Expression
GXD Expression
   
Assay Type: In situ reporter (knock in)
Annotation Date: 2021-04-16
Strength: Present
Sex: Male
Emaps: EMAPS:1757728
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:6691312
Age: postnatal adult
Image: UC Davis_1875984
Specimen Label: UC Davis_1875984
Detected: true
Specimen Num: 14
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GXD Expression
GXD Expression
 
Probe: MGI:6147541
Assay Type: Immunohistochemistry
Annotation Date: 2018-03-27
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689422
Pattern: Not Specified
Stage: TS22
Assay Id: MGI:6147580
Age: embryonic day 14.5
Image: 4D
Specimen Label: 4D
Detected: true
Specimen Num: 1
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GXD Expression
GXD Expression
 
Probe: MGI:6147541
Assay Type: Immunohistochemistry
Annotation Date: 2018-03-27
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689422
Pattern: Not Specified
Stage: TS22
Assay Id: MGI:6147580
Age: embryonic day 14.5
Image: 4E
Specimen Label: 4E
Detected: true
Specimen Num: 2
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GXD Expression
GXD Expression
 
Probe: MGI:6147541
Assay Type: Immunohistochemistry
Annotation Date: 2018-03-27
Strength: Ambiguous
Sex: Not Specified
Emaps: EMAPS:1689422
Pattern: Not Specified
Stage: TS22
Assay Id: MGI:6147580
Age: embryonic day 14.5
Image: 4F
Note: Authors report loss of expression - reduced to nearly undetectable levels - in mutant brains.
Specimen Label: 4F
Specimen Num: 3
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Publication
28289722 | J:264151
First Author: Solomon GM
Year: 2017
Journal: JCI Insight
Title: Assessment of ciliary phenotype in primary ciliary dyskinesia by micro-optical coherence tomography.
Volume: 2
Issue: 5
Pages: e91702
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Publication
21515572 | J:174027
First Author: Stottmann RW
Year: 2011
Journal: Genetics
Title: Focusing forward genetics: a tripartite ENU screen for neurodevelopmental mutations in the mouse.
Volume: 188
Issue: 3
Pages: 615-24
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Publication
27340223 | J:237132
First Author: Burnicka-Turek O
Year: 2016
Journal: Hum Mol Genet
Title: Cilia gene mutations cause atrioventricular septal defects by multiple mechanisms.
Volume: 25
Issue: 14
Pages: 3011-3028
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Publication
25807483 | J:222159
First Author: Li Y
Year: 2015
Journal: Nature
Title: Global genetic analysis in mice unveils central role for cilia in congenital heart disease.
Volume: 521
Issue: 7553
Pages: 520-4
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Publication
- | J:175213
     
First Author: Lo C
Year: 2011
Journal: MGI Direct Data Submission (B2B/CvDC)
Title: Information submitted by the NHLBI Cardiovascular Development Consortium (CvDC), Bench to Bassinet Program (B2B/CvDC)
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Publication
- | J:24194
     
First Author: The Jackson Laboratory Backcross DNA Panel Mapping Resource
Year: 1999
Journal: Database Release
Title: JAX BSS Panel Mapping Data
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Publication
10725249 | J:60984
First Author: Ko MS
Year: 2000
Journal: Development
Title: Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development.
Volume: 127
Issue: 8
Pages: 1737-49
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Publication
- | J:73065
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2001
Title: Gene Ontology Annotation by the MGI Curatorial Staff
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Publication
- | J:73796
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Function or Process or Component Unknown following Literature Review
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Publication
- | J:346132
       
First Author: The Gene Ontology Consortium
Year: 2016
Title: Automatic assignment of GO terms using logical inference, based on on inter-ontology links
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Publication
24194600 | J:228563
First Author: Koscielny G
Year: 2014
Journal: Nucleic Acids Res
Title: The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data.
Volume: 42
Issue: Database issue
Pages: D802-9
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Publication
- | J:80155
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations for FANTOM2 data
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Publication
- | J:204739
     
First Author: International Knockout Mouse Consortium
Year: 2014
Journal: Database Download
Title: MGI download of modified allele data from IKMC and creation of new knockout alleles
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Publication
- | J:57656
     
First Author: Lennon G
Year: 1999
Journal: Database Download
Title: WashU-HHMI Mouse EST Project
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Publication
- | J:204812
     
First Author: International Mouse Strain Resource
Year: 2014
Journal: Database Download
Title: MGI download of germline transmission data for alleles from IMSR strain data
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Publication
- | J:148605
     
First Author: Wellcome Trust Sanger Institute
Year: 2009
Journal: MGI Direct Data Submission
Title: Alleles produced for the KOMP project by the Wellcome Trust Sanger Institute
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Publication
- | J:238766
     
First Author: Shanghai Model Organisms Center
Year: 2017
Journal: MGI Direct Data Submission
Title: Information obtained from the Shanghai Model Organisms Center (SMOC), Shanghai, China
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Publication
- | J:211773
     
First Author: Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC)
Year: 2014
Journal: Database Release
Title: Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database
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Publication
- | J:85000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Title: MGI Sequence Curation Reference
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Publication
11217851 | J:65060
First Author: Kawai J
Year: 2001
Journal: Nature
Title: Functional annotation of a full-length mouse cDNA collection.
Volume: 409
Issue: 6821
Pages: 685-90
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Publication
38355793 | J:345621
First Author: Adams DJ
Year: 2024
Journal: Nature
Title: Genetic determinants of micronucleus formation in vivo.
Volume: 627
Issue: 8002
Pages: 130-136
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Publication
- | J:23000
       
First Author: MGD Nomenclature Committee
Year: 1995
Title: Nomenclature Committee Use
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Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
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Publication
21677750 | J:173534
First Author: Skarnes WC
Year: 2011
Journal: Nature
Title: A conditional knockout resource for the genome-wide study of mouse gene function.
Volume: 474
Issue: 7351
Pages: 337-42
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Publication
- | J:342587
       
First Author: AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators
Year: 2011
Title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
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Publication
- | J:342605
       
First Author: GOA curators
Year: 2016
Title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
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Publication
- | J:68900
     
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
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Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
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Publication
- | J:164563
       
First Author: The Gene Ontology Consortium
Year: 2010
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
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Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
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Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
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Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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GXD Expression
GXD Expression
Probe: MGI:6147547
Assay Type: Immunohistochemistry
Annotation Date: 2018-03-27
Strength: Present
Sex: Not Specified
Emaps: EMAPS:3267424
Pattern: Regionally restricted
Stage: TS24
Assay Id: MGI:6147583
Age: embryonic day 16.5
Image: 4G E16.5 FOXJ1
Note: Co-expression with Ccdc39 in ependhymal cells on ventromedial walls as early as E16.
Specimen Label: 4G E16.5 FOXJ1
Detected: true
Specimen Num: 1
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GXD Expression
GXD Expression
Probe: MGI:6147547
Assay Type: Immunohistochemistry
Annotation Date: 2018-03-27
Strength: Present
Sex: Not Specified
Emaps: EMAPS:3786527
Pattern: Regionally restricted
Stage: TS27
Assay Id: MGI:6147583
Age: postnatal day 0
Image: 4G P0 FOXJ1
Note: Co-expression with Ccdc39 in ependhymal cells on ventromedial walls continues through P0.
Specimen Label: 4G P0 FOXJ1
Detected: true
Specimen Num: 2
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Allele
b2b2025Clo | MGI:5491236
 
Name: Mutant line 2025; Bench to Bassinet Program (B2B/CVDC), mutation 2025 Cecilia Lo
Allele Type: Chemically induced (ENU)
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Allele
Ccdc39<b2b2025.1Clo> | MGI:5554444
 
Name: coiled-coil domain containing 39; Bench to Bassinet Program (B2B/CVDC) mutation 2025, subline 1, Cecilia Lo
Allele Type: Chemically induced (ENU)
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DO Term
DOID:0110598 | primary ciliary dyskinesia 14
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Allele
Ccdc39<b2b1304Clo> | MGI:5316786
 
Name: coiled-coil domain containing 39; Bench to Bassinet Program (B2B/CvDC) mutation 1304, Cecilia Lo
Allele Type: Chemically induced (ENU)
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Allele
Ccdc39<b2b1735Clo> | MGI:5438066
 
Name: coiled-coil domain containing 39; Bench to Bassinet Program (B2B/CVDC) mutation 1735, Cecilia Lo
Allele Type: Chemically induced (ENU)
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Heritable Phenotypic Marker
MGI:5491159 | b2b2025Clo
Type: heritable_phenotypic_marker
Organism: mouse, laboratory
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Genotype
Genotype
Symbol: Ccdc39/Ccdc39
Background: C57BL/6J-Ccdc39
Zygosity: hm
Has Mutant Allele: true
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Genotype
Genotype
Symbol: b2b2025Clo/b2b2025Clo
Background: C57BL/6J-b2b2025Clo
Zygosity: hm
Has Mutant Allele: true
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Protein
Q8BI79
Organism: Mus musculus/domesticus
Length: 1192  
Fragment?: false
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Protein
A0A494BAF9
Organism: Mus musculus/domesticus
Length: 1262  
Fragment?: false
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Protein
Q8BI54
Organism: Mus musculus/domesticus
Length: 186  
Fragment?: false
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Publication
21131974 | J:168691
First Author: Becker-Heck A
Year: 2011
Journal: Nat Genet
Title: The coiled-coil domain containing protein CCDC40 is essential for motile cilia function and left-right axis formation.
Volume: 43
Issue: 1
Pages: 79-84
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Publication
28182636 | J:245906
First Author: Sugrue KF
Year: 2017
Journal: PLoS One
Title: Mechanism for generation of left isomerism in Ccdc40 mutant embryos.
Volume: 12
Issue: 2
Pages: e0171180
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Publication
25619595 | -
First Author: Sui W
Year: 2016
Journal: Clin Respir J
Title: CCDC40 mutation as a cause of primary ciliary dyskinesia: a case report and review of literature.
Volume: 10
Issue: 5
Pages: 614-21
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Protein Domain
IPR037386 | CCDC40
Type: Family
Description: Coiled-coil domain containing protein 40 (CCDC40) plays an evolutionary conserved role in the assembly of motile cilia and establishment of the left-right axis [, ]. CCDC40 may serve as a part of the axoneme structural scaffold. It has been shown to be required for axonemal recruitment of CCDC39 []. CCDC40 mutation is a cause of primary ciliary dyskinesia [].
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Genotype
Genotype
Symbol: Ccdc39/Ccdc39
Background: C57BL/6J-Ccdc39
Zygosity: hm
Has Mutant Allele: true
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Genotype
Genotype
Symbol: Ccdc39/Ccdc39
Background: C57BL/6J-Ccdc39
Zygosity: hm
Has Mutant Allele: true
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