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Search results 101 to 182 out of 182 for Ddb2

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Type Details Score
Publication
First Author: Biedermann S
Year: 2010
Journal: Plant J
Title: The DDB1a interacting proteins ATCSA-1 and DDB2 are critical factors for UV-B tolerance and genomic integrity in Arabidopsis thaliana.
Volume: 62
Issue: 3
Pages: 404-15
Strain
Attribute String: coisogenic, endonuclease-mediated mutation, mutant strain
Publication
First Author: Zhang L
Year: 2015
Journal: Cell Rep
Title: The deubiquitinating enzyme USP24 is a regulator of the UV damage response.
Volume: 10
Issue: 2
Pages: 140-7
Publication
First Author: Wang YC
Year: 2016
Journal: Oncogene
Title: Variants of ubiquitin-specific peptidase 24 play a crucial role in lung cancer malignancy.
Volume: 35
Issue: 28
Pages: 3669-80
Publication
First Author: Peterson LF
Year: 2015
Journal: Blood
Title: Targeting deubiquitinase activity with a novel small-molecule inhibitor as therapy for B-cell malignancies.
Volume: 125
Issue: 23
Pages: 3588-97
Publication  
First Author: Sun Y
Year: 2018
Journal: J Virol
Title: Human Cytomegalovirus Protein pUL38 Prevents Premature Cell Death by Binding to Ubiquitin-Specific Protease 24 and Regulating Iron Metabolism.
Volume: 92
Issue: 13
Protein Domain
Type: Family
Description: Ubiquitin-specific peptidase 24 (USP24, MEROPS identifier C19.047) is a de-ubiquitinating enzyme that is associated with late-onset Parkinson's Disease []. The enzyme is known to remove ubiquitin from damage-specific DNA-binding protein 2 (DDB2), increasing its stability. DDB2 is involved in DNA damage recognition in the nucleotide excision repair pathway, and is a component of an E3 ligase that targets XPC, histones and DDB2 itself []. USP24 also de-ubiquitinates p53, and cells are resistant to apoptosis following UV irradiation if USP24 is depleted because p53 is stabilized []. Single-nucleotide polymorphisms of the USP24 gene have been identified in lung cancer malignancy and could be diagnostic markers for the disease []. The USP24 gene is up-regulated when the USP9X gene is down-regulated by shRNA, leading to increased survival of B-cell myeloma cells []. USP24 positively regulates ferritinophagy, a process in which ferritin is degraded in lysosomes and releases free iron [].
Publication
First Author: Liu L
Year: 2009
Journal: Mol Cell
Title: CUL4A abrogation augments DNA damage response and protection against skin carcinogenesis.
Volume: 34
Issue: 4
Pages: 451-60
Publication
First Author: Wu YR
Year: 2010
Journal: Clin Chim Acta
Title: Ubiquitin specific proteases USP24 and USP40 and ubiquitin thiolesterase UCHL1 polymorphisms have synergic effect on the risk of Parkinson's disease among Taiwanese.
Volume: 411
Issue: 13-14
Pages: 955-8
Protein
Organism: Mus musculus/domesticus
Length: 313  
Fragment?: false
Publication
First Author: Liu C
Year: 2013
Journal: J Biol Chem
Title: COP9 signalosome subunit Csn8 is involved in maintaining proper duration of the G1 phase.
Volume: 288
Issue: 28
Pages: 20443-52
Publication
First Author: Oren-Giladi P
Year: 2008
Journal: Genes Cells
Title: Cop9 signalosome subunit 8 (CSN8) is essential for Drosophila development.
Volume: 13
Issue: 3
Pages: 221-31
Publication
First Author: Hong X
Year: 2001
Journal: FEBS Lett
Title: CSN3 interacts with IKKgamma and inhibits TNF- but not IL-1-induced NF-kappaB activation.
Volume: 499
Issue: 1-2
Pages: 133-6
Protein Domain
Type: Family
Description: This entry includes eIF3m and COPS7A/B. eIF3m is a component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome []. The COP9 signalosome (CSN) is a conserved protein complex that regulates the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes [], which leads to a decrease in Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2 []. Protein kinases CK2 and D, which phosphorylate proteins such as cJun and p53 resulting in their degradation by the ubiquitin-26S proteasome system, also binds to CSN [, ]. The mammalian CSN typically consistis of eight subunits designated CSN1-CSN8. The fission yeast possesses a smaller version of the CSN, consisting only of six subunits, whereas a more distant CSN-like complex has been described in Saccharomyces cerevisiae [].
Protein Domain
Type: Family
Description: The COP9 signalosome (CSN) is a conserved protein complex that regulates the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes [], which leads to a decrease in Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2 []. Protein kinases CK2 and D, which phosphorylate proteins such as cJun and p53 resulting in their degradation by the ubiquitin-26S proteasome system, also binds to CSN [, ]. The mammalian CSN typically consistis of eight subunits designated CSN1-CSN8. The fission yeast possesses a smaller version of the CSN, consisting only of six subunits, whereas a more distant CSN-like complex has been described in Saccharomyces cerevisiae [].In mammals, the CSN7 subunit is encoded by two similar genes, CSN7a and CSN7b []. This entry represents subunit CSN7b.
Protein Domain
Type: Family
Description: The COP9 signalosome (CSN) is a conserved protein complex that regulates the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes [], which leads to a decrease in Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2 []. Protein kinases CK2 and D, which phosphorylate proteins such as cJun and p53 resulting in their degradation by the ubiquitin-26S proteasome system, also binds to CSN [, ]. The mammalian CSN typically consistis of eight subunits designated CSN1-CSN8. The fission yeast possesses a smaller version of the CSN, consisting only of six subunits, whereas a more distant CSN-like complex has been described in Saccharomyces cerevisiae [].This entry includes the COP9 signalosome complex (CSN) subunits 2 and 10. Subunit 10 is found only in some yeasts and is uncharacterized.
Protein Domain
Type: Family
Description: The COP9 signalosome (CSN) is a conserved protein complex that regulates the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3ligase complexes [], which leads to a decrease in Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2 []. Protein kinases CK2 and D, which phosphorylate proteins such as cJun and p53 resulting in their degradation by the ubiquitin-26S proteasome system, also binds to CSN [, ]. The mammalian CSN typically consistis of eight subunits designated CSN1-CSN8. The fission yeast possesses a smaller version of the CSN, consisting only of six subunits, whereas a more distant CSN-like complex has been described in Saccharomyces cerevisiae [].This entry includes the COP9 signalosome complex (CSN) subunit 3 (CSN3). Interactions have been identified between CSN3 and IKKgamma, which prevents activation of transcription factor nuclear factor kappaB (NF-kappaB) []; and the Int-6 protein subunit of the eIF3 translation initiation factor [].
Protein Domain
Type: Family
Description: The COP9 signalosome (CSN) is a conserved protein complex that regulates the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes [], which leads to a decrease in Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2 []. Protein kinases CK2 and D, which phosphorylate proteins such as cJun and p53 resulting in their degradation by the ubiquitin-26S proteasome system, also binds to CSN [, ]. The mammalian CSN typically consistis of eight subunits designated CSN1-CSN8. The fission yeast possesses a smaller version of the CSN, consisting only of six subunits, whereas a more distant CSN-like complex has been described in Saccharomyces cerevisiae [].In the complex, CSN8, which is the smallest subunit, probably interacts directly with CSN3, CSN4 and CSN7 (CSN7A or CSN7B). It is necessary for assembly of the complex []. CSN8 plays an important role in maintaining the proper duration of the G1 phase of the cell cycle [].
Protein
Organism: Mus musculus/domesticus
Length: 103  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 62  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 199  
Fragment?: true
Publication
First Author: Martinez E
Year: 2001
Journal: Mol Cell Biol
Title: Human STAGA complex is a chromatin-acetylating transcription coactivator that interacts with pre-mRNA splicing and DNA damage-binding factors in vivo.
Volume: 21
Issue: 20
Pages: 6782-95
Publication
First Author: Durik M
Year: 2012
Journal: Circulation
Title: Nucleotide excision DNA repair is associated with age-related vascular dysfunction.
Volume: 126
Issue: 4
Pages: 468-78
Publication
First Author: Chan CH
Year: 2019
Journal: Mol Cancer Res
Title: DNA Damage, Liver Injury, and Tumorigenesis: Consequences of DDX3X Loss.
Volume: 17
Issue: 2
Pages: 555-566
Publication  
First Author: Yang Z
Year: 2023
Journal: Toxicol Appl Pharmacol
Title: NAT10 regulates the repair of UVB-induced DNA damage and tumorigenicity.
Volume: 477
Pages: 116688
Publication  
First Author: Yang Z
Year: 2021
Journal: Proc Natl Acad Sci U S A
Title: METTL14 facilitates global genome repair and suppresses skin tumorigenesis.
Volume: 118
Issue: 35
Publication
First Author: Lyapina S
Year: 2001
Journal: Science
Title: Promotion of NEDD-CUL1 conjugate cleavage by COP9 signalosome.
Volume: 292
Issue: 5520
Pages: 1382-5
Publication
First Author: Uhle S
Year: 2003
Journal: EMBO J
Title: Protein kinase CK2 and protein kinase D are associated with the COP9 signalosome.
Volume: 22
Issue: 6
Pages: 1302-12
Publication
First Author: Bech-Otschir D
Year: 2001
Journal: EMBO J
Title: COP9 signalosome-specific phosphorylation targets p53 to degradation by the ubiquitin system.
Volume: 20
Issue: 7
Pages: 1630-9
Publication
First Author: Wei N
Year: 2008
Journal: Trends Biochem Sci
Title: The COP9 signalosome: more than a protease.
Volume: 33
Issue: 12
Pages: 592-600
Protein
Organism: Mus musculus/domesticus
Length: 79  
Fragment?: true
Publication
First Author: Fang L
Year: 2008
Journal: J Proteome Res
Title: Characterization of the human COP9 signalosome complex using affinity purification and mass spectrometry.
Volume: 7
Issue: 11
Pages: 4914-25
Publication
First Author: Hoareau Alves K
Year: 2002
Journal: FEBS Lett
Title: Association of the mammalian proto-oncoprotein Int-6 with the three protein complexes eIF3, COP9 signalosome and 26S proteasome.
Volume: 527
Issue: 1-3
Pages: 15-21
Protein
Organism: Mus musculus/domesticus
Length: 143  
Fragment?: true
Protein
Organism: Mus musculus/domesticus
Length: 80  
Fragment?: true
Publication
First Author: da Silva Correia J
Year: 2007
Journal: J Biol Chem
Title: The subunit CSN6 of the COP9 signalosome is cleaved during apoptosis.
Volume: 282
Issue: 17
Pages: 12557-65
Publication
First Author: Hetfeld BK
Year: 2008
Journal: Apoptosis
Title: The COP9 signalosome-mediated deneddylation is stimulated by caspases during apoptosis.
Volume: 13
Issue: 2
Pages: 187-95
Publication
First Author: Zhang H
Year: 2012
Journal: FEBS Lett
Title: The crystal structure of the MPN domain from the COP9 signalosome subunit CSN6.
Volume: 586
Issue: 8
Pages: 1147-53
Publication
First Author: Cope GA
Year: 2002
Journal: Science
Title: Role of predicted metalloprotease motif of Jab1/Csn5 in cleavage of Nedd8 from Cul1.
Volume: 298
Issue: 5593
Pages: 608-11
Publication
First Author: Granata A
Year: 2011
Journal: EMBO J
Title: CSN complex controls the stability of selected synaptic proteins via a torsinA-dependent process.
Volume: 30
Issue: 1
Pages: 181-93
Publication
First Author: Wang Y
Year: 2002
Journal: Biochem J
Title: Polyamine-modulated factor 1 binds to the human homologue of the 7a subunit of the Arabidopsis COP9 signalosome: implications in gene expression.
Volume: 366
Issue: Pt 1
Pages: 79-86
Protein Domain
Type: Family
Description: The COP9 signalosome (CSN) is a conserved protein complex that regulates the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes [], which leads to a decrease in Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2 []. Protein kinases CK2 and D, which phosphorylate proteins such as cJun and p53 resulting in their degradation by the ubiquitin-26S proteasome system, also binds to CSN [, ]. The mammalian CSN typically consistis of eight subunits designated CSN1-CSN8. The fission yeast possesses a smaller version of the CSN, consisting only of six subunits, whereas a more distant CSN-like complex has been described in Saccharomyces cerevisiae [].This entry includes the COP9 signalosome complex (CSN) subunit 4 (CSN4). CSN4 also binds to the AAA+ ATPase torsinA, and CSN4 and torsinA in turn stabilize snapin, which is phosphorylated by protein kinase D, and stonin 2, which is neddylated. A mutation in torsinA leads to DYT1 dystonia, and overexpression of the mutant leads to a reduction of stonin 2 expression, suggesting that the mutant compromises the role of torsinA in protein stabilization and synaptic vesicle recycling [].
Protein Domain
Type: Family
Description: The COP9 signalosome (CSN) is a conserved protein complex that regulates the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes [], which leads to a decrease in Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2 []. Protein kinases CK2 and D, which phosphorylate proteins such as cJun and p53 resulting in their degradation by the ubiquitin-26S proteasome system, also binds to CSN [, ]. The mammalian CSN typically consistis of eight subunits designated CSN1-CSN8. The fission yeast possesses a smaller version of the CSN, consisting only of six subunits, whereas a more distant CSN-like complex has been described in Saccharomyces cerevisiae [].In mammals, the CSN7 subunit is encoded by two similar genes, CSN7A and CSN7B []. This entry irepresents the COP9 signalosome complex (CSN) subunit 7a (CSN7A). Either CSN7A or CSN7B can be a component of CSN. CSN7A binds to polyamine-modulated factor 1, and each competes with the other for binding to NF-E2 related factor-2 (Nrf-2). Binding to Nrf-2 regulates transcription of spermidine/spermine N(1)-acetyltransferase []. CSN7A also binds the Int-6 protein subunit of the eIF3 translation initiation factor []; and protein kinases CK2 and D, which phosphorylate proteins such as cJun and p53, resulting in their degradation by the ubiquitin-26S proteasome system [].
Protein Domain
Type: Family
Description: The COP9 signalosome (CSN) is a conserved protein complex that regulates the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes [], which leads to a decrease in Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2 []. Protein kinases CK2 and D, which phosphorylate proteins such as cJun and p53 resulting in their degradation by the ubiquitin-26S proteasome system, also binds to CSN [, ]. The mammalian CSN typically consistis of eight subunits designated CSN1-CSN8. The fission yeast possesses a smaller version of the CSN, consisting only of six subunits, whereas a more distant CSN-like complex has been described in Saccharomyces cerevisiae [].COP9 signalosome complex subunit 5 (Rri1, CSN5 or JAB1) is a metallo-isopeptidase (MEROPS identifier M67.002) that releases the ubiquitin-like protein Nedd8 from the Cul1 subunit of SCF ubiquitin ligases []. Rri1 binds a zinc ion via the histidines in an HXH motif and an aspartic acid C-terminal to this motif []. This entry includes CSN5 homologues from yeast to human.
Protein Domain
Type: Family
Description: The COP9 signalosome (CSN) is a conserved protein complex that regulates the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes [], which leads to a decrease in Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2 []. Protein kinases CK2 and D, which phosphorylate proteins such as cJun and p53 resulting in their degradation by the ubiquitin-26S proteasome system, also binds to CSN [, ]. The mammalian CSN typically consistis of eight subunits designated CSN1-CSN8. The fission yeast possesses a smaller version of the CSN, consisting only of six subunits, whereas a more distant CSN-like complex has been described in Saccharomyces cerevisiae [].CSN6 (COP9 signalosome subunit 6; COP9 subunit 6; MOV34 homolog, 34 kD; MEROPS identifier M67.972) is one of the eight subunits of COP9 signalosome. CSN6 is an MPN-domain protein that directly interacts with the MPN+-domain subunit CSN5 []. It is cleaved during apoptosis by activated caspases. CSN6 processing occurs in CSN/CRL (cullin-RING Ub ligase) complexes and is followed by the cleavage of Rbx1, the direct interaction partner of CSN6 []. CSN6 cleavage enhances CSN-mediated deneddylating activity (i.e. cleavage of ubiquitin-like protein Nedd8 (neural precursor cell expressed, developmentally downregulated 8)) in the cullin 1 in cells []. The cleavage of Rbx1 and increased deneddylation of cullins inactivate CRLs and presumably stabilize pro-apoptotic factors for final apoptotic steps. While CSN6 shows a typical MPN metalloprotease fold, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.
Protein
Organism: Mus musculus/domesticus
Length: 275  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 264  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 176  
Fragment?: true
Protein
Organism: Mus musculus/domesticus
Length: 226  
Fragment?: true
Protein
Organism: Mus musculus/domesticus
Length: 264  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 206  
Fragment?: true
Protein
Organism: Mus musculus/domesticus
Length: 244  
Fragment?: true
Protein
Organism: Mus musculus/domesticus
Length: 423  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 209  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 244  
Fragment?: true
Protein
Organism: Mus musculus/domesticus
Length: 423  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 134  
Fragment?: true
Protein
Organism: Mus musculus/domesticus
Length: 242  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 406  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 334  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 443  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 324  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 374  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 297  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 406  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 220  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 402  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 450  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 210  
Fragment?: true
Protein
Organism: Mus musculus/domesticus
Length: 406  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 324  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 147  
Fragment?: true
Protein
Organism: Mus musculus/domesticus
Length: 443  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 253  
Fragment?: true
Publication
First Author: Asano K
Year: 1997
Journal: J Biol Chem
Title: Conservation and diversity of eukaryotic translation initiation factor eIF3.
Volume: 272
Issue: 2
Pages: 1101-9
Protein
Organism: Mus musculus/domesticus
Length: 2617  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 2618  
Fragment?: false
Publication
First Author: Carninci P
Year: 2000
Journal: Genome Res
Title: Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes.
Volume: 10
Issue: 10
Pages: 1617-30
Publication  
First Author: Carninci P
Year: 1999
Journal: Methods Enzymol
Title: High-efficiency full-length cDNA cloning.
Volume: 303
Pages: 19-44
Publication
First Author: Shibata K
Year: 2000
Journal: Genome Res
Title: RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer.
Volume: 10
Issue: 11
Pages: 1757-71
Publication
First Author: Katayama S
Year: 2005
Journal: Science
Title: Antisense transcription in the mammalian transcriptome.
Volume: 309
Issue: 5740
Pages: 1564-6
Publication
First Author: Gerhard DS
Year: 2004
Journal: Genome Res
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
Volume: 14
Issue: 10B
Pages: 2121-7