Type |
Details |
Score |
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
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|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
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|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
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|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
314
|
Fragment?: |
false |
|
•
•
•
•
•
|
UniProt Feature |
Begin: |
1 |
Description: |
Ubiquitin-like-conjugating enzyme ATG3 |
Type: |
chain |
End: |
314 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ye Y |
Year: |
2021 |
Journal: |
Nat Commun |
Title: |
An N-terminal conserved region in human Atg3 couples membrane curvature sensitivity to conjugase activity during autophagy. |
Volume: |
12 |
Issue: |
1 |
Pages: |
374 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tanida I |
Year: |
2002 |
Journal: |
J Biol Chem |
Title: |
Human Apg3p/Aut1p homologue is an authentic E2 enzyme for multiple substrates, GATE-16, GABARAP, and MAP-LC3, and facilitates the conjugation of hApg12p to hApg5p. |
Volume: |
277 |
Issue: |
16 |
Pages: |
13739-44 |
|
•
•
•
•
•
|
Publication |
First Author: |
Moloughney JG |
Year: |
2011 |
Journal: |
Autophagy |
Title: |
Vaccinia virus leads to ATG12–ATG3 conjugation and deficiency in autophagosome formation. |
Volume: |
7 |
Issue: |
12 |
Pages: |
1434-47 |
|
•
•
•
•
•
|
Interaction Experiment |
Description: |
ATG12 conjugation to ATG3 regulates mitochondrial homeostasis and cell death. |
|
•
•
•
•
•
|
Interaction Experiment |
Description: |
Structural basis of ATG3 recognition by the autophagic ubiquitin-like protein ATG12. |
|
•
•
•
•
•
|
Publication |
First Author: |
Yamaguchi M |
Year: |
2012 |
Journal: |
Nat Struct Mol Biol |
Title: |
Noncanonical recognition and UBL loading of distinct E2s by autophagy-essential Atg7. |
Volume: |
19 |
Issue: |
12 |
Pages: |
1250-6 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
This is the N-terminal domain of ubiquitin-like modifier-activating enzyme ATG7. In Arabidopsis this domain binds the E2 enzymes ATG10 and ATG3 []. |
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•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
67
|
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
41
|
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
110
|
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
215
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
211
|
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Noda T |
Year: |
2008 |
Journal: |
Autophagy |
Title: |
The Ubi brothers reunited. |
Volume: |
4 |
Issue: |
4 |
Pages: |
540-1 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yamada Y |
Year: |
2007 |
Journal: |
J Biol Chem |
Title: |
The crystal structure of Atg3, an autophagy-related ubiquitin carrier protein (E2) enzyme that mediates Atg8 lipidation. |
Volume: |
282 |
Issue: |
11 |
Pages: |
8036-43 |
|
•
•
•
•
•
|
Publication |
First Author: |
Flanagan MD |
Year: |
2013 |
Journal: |
Cell Cycle |
Title: |
An Atg10-like E2 enzyme is essential for cell cycle progression but not autophagy in Schizosaccharomyces pombe. |
Volume: |
12 |
Issue: |
2 |
Pages: |
271-7 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
This entry represents a group of ubiquitin-like-conjugating enzymes, including Atg3 and Atg10.Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/β-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long α-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme.Atg10 acts as an E2-like enzyme that catalyzes the conjugation of ATG12 to ATG5 []. |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Homologous_superfamily |
Description: |
This superfamily represents the second subdomain found in the N-terminal domain of ubiquitin-like modifier-activating enzyme Atg7. In Arabidopsis, the N-terminal domain binds the E2 enzymes Atg10 and Atg3 []. |
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•
•
•
•
•
|
Protein Domain |
Type: |
Homologous_superfamily |
Description: |
This superfamily represents the first subdomain found in the N-terminal domain of ubiquitin-like modifier-activating enzyme Atg7. In Arabidopsis, the N-terminal domain binds the E2 enzymes Atg10 and Atg3 []. |
|
•
•
•
•
•
|
Publication |
First Author: |
Wang Y |
Year: |
2012 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Autophagic activity dictates the cellular response to oncogenic RAS. |
Volume: |
109 |
Issue: |
33 |
Pages: |
13325-30 |
|
•
•
•
•
•
|
Publication |
First Author: |
Vujić N |
Year: |
2021 |
Journal: |
Autophagy |
Title: |
ATG7 is dispensable for LC3-PE conjugation in thioglycolate-elicited mouse peritoneal macrophages. |
Volume: |
17 |
Issue: |
11 |
Pages: |
3402-3407 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
232
|
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
222
|
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
172
|
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
698
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
741
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
671
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
698
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
698
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
618
|
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Li Z |
Year: |
2020 |
Journal: |
Cell Death Differ |
Title: |
Haploinsufficiency of GCP4 induces autophagy and leads to photoreceptor degeneration due to defective spindle assembly in retina. |
Volume: |
27 |
Issue: |
2 |
Pages: |
556-572 |
|
•
•
•
•
•
|
Publication |
First Author: |
Xu X |
Year: |
2019 |
Journal: |
Autophagy |
Title: |
Gene essentiality of Tubgcp4: dosage effect and autophagy regulation in retinal photoreceptors. |
Volume: |
15 |
Issue: |
10 |
Pages: |
1834-1837 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ghavami S |
Year: |
2012 |
Journal: |
Biochim Biophys Acta |
Title: |
Autophagy regulates trans fatty acid-mediated apoptosis in primary cardiac myofibroblasts. |
Volume: |
1823 |
Issue: |
12 |
Pages: |
2274-86 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ko Y |
Year: |
2013 |
Journal: |
Infect Immun |
Title: |
Active escape of Orientia tsutsugamushi from cellular autophagy. |
Volume: |
81 |
Issue: |
2 |
Pages: |
552-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ghavami S |
Year: |
2014 |
Journal: |
Biochim Biophys Acta |
Title: |
Airway mesenchymal cell death by mevalonate cascade inhibition: integration of autophagy, unfolded protein response and apoptosis focusing on Bcl2 family proteins. |
Volume: |
1843 |
Issue: |
7 |
Pages: |
1259-71 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kundu S |
Year: |
2014 |
Journal: |
Biochim Biophys Acta |
Title: |
Hydrogen sulfide mitigates hyperglycemic remodeling via liver kinase B1-adenosine monophosphate-activated protein kinase signaling. |
Volume: |
1843 |
Issue: |
12 |
Pages: |
2816-26 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yeganeh B |
Year: |
2018 |
Journal: |
Biochim Biophys Acta |
Title: |
Autophagy activation is required for influenza A virus-induced apoptosis and replication. |
Volume: |
1865 |
Issue: |
2 |
Pages: |
364-378 |
|
•
•
•
•
•
|
Publication |
First Author: |
Gerhard DS |
Year: |
2004 |
Journal: |
Genome Res |
Title: |
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |
Volume: |
14 |
Issue: |
10B |
Pages: |
2121-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Huttlin EL |
Year: |
2010 |
Journal: |
Cell |
Title: |
A tissue-specific atlas of mouse protein phosphorylation and expression. |
Volume: |
143 |
Issue: |
7 |
Pages: |
1174-89 |
|
•
•
•
•
•
|