Type |
Details |
Score |
Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7256457 |
Assay Type: |
RNA in situ |
Annotation Date: |
2022-03-23 |
Strength: |
Weak |
Sex: |
Not Specified |
Emaps: |
EMAPS:3594419 |
Pattern: |
Not Specified |
Stage: |
TS19 |
Assay Id: |
MGI:7256489 |
Age: |
embryonic day 11.5 |
Image: |
4F |
Note: |
Decreased expression upon loss of Ptch1 and Ptch2. |
Specimen Label: |
4F |
Detected: |
true |
Specimen Num: |
5 |
|
•
•
•
•
•
|
DO Term |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6382995 |
Assay Type: |
RNA in situ |
Annotation Date: |
2020-01-02 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1716823 |
Pattern: |
Widespread |
Stage: |
TS23 |
Assay Id: |
MGI:6383014 |
Age: |
embryonic day 15.5 |
Image: |
2G |
Note: |
Authors report expression comparable to that of Gli1 and Ptch1 in wild type retina. |
Specimen Label: |
2G |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7256459 |
Assay Type: |
RNA in situ |
Annotation Date: |
2022-03-23 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3594419 |
Pattern: |
Regionally restricted |
Stage: |
TS19 |
Assay Id: |
MGI:7256491 |
Age: |
embryonic day 11.5 |
Image: |
4I |
Note: |
Ectopic expression in anterior of limb further exacerbated upon loss of both Ptch1 and Ptch2. |
Specimen Label: |
4I |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
DO Term |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6711085 |
Assay Type: |
RNA in situ |
Annotation Date: |
2021-05-17 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3276320 |
Pattern: |
Regionally restricted |
Stage: |
TS20 |
Assay Id: |
MGI:6711092 |
Age: |
embryonic day 12.5 |
Image: |
3L |
Note: |
Expression was detected in the region of the vibrissae in a ring outside of the Ptch1 expression domain. |
Specimen Label: |
3L |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
Publication |
First Author: |
Dobson THW |
Year: |
2019 |
Journal: |
Sci Signal |
Title: |
Transcriptional repressor REST drives lineage stage-specific chromatin compaction at Ptch1 and increases AKT activation in a mouse model of medulloblastoma. |
Volume: |
12 |
Issue: |
565 |
|
|
•
•
•
•
•
|
Allele |
Name: |
patched 1; targeted mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Targeted |
Attribute String: |
Conditional ready, No functional change |
|
•
•
•
•
•
|
Allele |
Name: |
transgene insertion MT22, Matthew P Scott |
Allele Type: |
Transgenic |
Attribute String: |
Inserted expressed sequence |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, mutant strain, targeted mutation |
|
•
•
•
•
•
|
Allele |
Name: |
transgene insertion MT19, Matthew P Scott |
Allele Type: |
Transgenic |
Attribute String: |
Inserted expressed sequence |
|
•
•
•
•
•
|
HT Experiment |
|
Experiment Type: |
RNA-Seq |
Study Type: |
WT vs. Mutant |
Source: |
GEO |
|
•
•
•
•
•
|
Allele |
Name: |
transgene insertion, Allan Balmain |
Allele Type: |
Transgenic |
Attribute String: |
Inserted expressed sequence |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Ptch1/Ptch1 Tg(Mt1-Ptch1)MT22Mps/? |
Background: |
involves: 129S1/Sv * 129X1/SvJ * FVB |
Zygosity: |
cx |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
HT Experiment |
|
Experiment Type: |
RNA-Seq |
Study Type: |
WT vs. Mutant |
Source: |
GEO |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Hhip/Hhip<+> Ptch1/Ptch1 Tg(Mt1-Ptch1)MT22Mps/? |
Background: |
involves: 129S1/Sv * 129X1/SvJ * FVB |
Zygosity: |
cx |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Hhip/Hhip Ptch1/Ptch1 Tg(Mt1-Ptch1)MT22Mps/? |
Background: |
involves: 129S1/Sv * 129X1/SvJ * FVB |
Zygosity: |
cx |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Campaner S |
Year: |
2005 |
Journal: |
Mol Cell Biol |
Title: |
Sil phosphorylation in a Pin1 binding domain affects the duration of the spindle checkpoint. |
Volume: |
25 |
Issue: |
15 |
Pages: |
6660-72 |
|
•
•
•
•
•
|
Publication |
First Author: |
Collazo-Garcia N |
Year: |
1995 |
Journal: |
Genomics |
Title: |
Cloning and characterization of a murine SIL gene. |
Volume: |
30 |
Issue: |
3 |
Pages: |
506-13 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1262
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1262
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
79
|
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
399
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1262
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1261
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
641
|
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
640
|
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Pfaff KL |
Year: |
2007 |
Journal: |
Mol Cell Biol |
Title: |
The zebra fish cassiopeia mutant reveals that SIL is required for mitotic spindle organization. |
Volume: |
27 |
Issue: |
16 |
Pages: |
5887-97 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kumar A |
Year: |
2009 |
Journal: |
Am J Hum Genet |
Title: |
Mutations in STIL, encoding a pericentriolar and centrosomal protein, cause primary microcephaly. |
Volume: |
84 |
Issue: |
2 |
Pages: |
286-90 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
SIL (also called STIL/TAL1 interrupting locus) is an immediate-early gene that is essential for embryonic development and is implicated in T-cell leukemia-associated translocations [, ]. Sil protein is necessary for proper mitotic spindle organisation in zebrafish and human cells and localizes to the mitotic spindle poles only during metaphase []. Mouse Sil was suggested to play a role as a positive regulator of the sonic hedgehog pathway, acting downstream of PTCH1 []. In human, cell cycle-dependent phosphorylation of Sil is required for its interaction with Pin1, a regulator of mitosis [].Primary microcephaly (MCPH) is an autosomal-recessive congenital disorder characterised by smaller-than-normal brain size and mental retardation. Three different homozygous mutations in SIL were identified in patients from three of the five families linked to the MCPH7 locus; all are predicted to truncate the Sil protein []. |
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
GSE14470 |
Experiment Type: |
RNA-Seq |
Study Type: |
WT vs. Mutant |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
HT Experiment |
|
Experiment Type: |
RNA-Seq |
Study Type: |
WT vs. Mutant |
Source: |
GEO |
|
•
•
•
•
•
|
Publication |
First Author: |
Golling G |
Year: |
2002 |
Journal: |
Nat Genet |
Title: |
Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development. |
Volume: |
31 |
Issue: |
2 |
Pages: |
135-40 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hettmer S |
Year: |
2013 |
Journal: |
J Pathol |
Title: |
Mutations in Hedgehog pathway genes in fetal rhabdomyomas. |
Volume: |
231 |
Issue: |
1 |
Pages: |
44-52 |
|
•
•
•
•
•
|
Publication |
First Author: |
Sun J |
Year: |
2021 |
Journal: |
Nat Commun |
Title: |
SLITRK5 is a negative regulator of hedgehog signaling in osteoblasts. |
Volume: |
12 |
Issue: |
1 |
Pages: |
4611 |
|
•
•
•
•
•
|
Publication |
First Author: |
Toftgård R |
Year: |
2000 |
Journal: |
Cell Mol Life Sci |
Title: |
Hedgehog signalling in cancer. |
Volume: |
57 |
Issue: |
12 |
Pages: |
1720-31 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wang M |
Year: |
2020 |
Journal: |
Cell Death Differ |
Title: |
Trim32 suppresses cerebellar development and tumorigenesis by degrading Gli1/sonic hedgehog signaling. |
Volume: |
27 |
Issue: |
4 |
Pages: |
1286-1299 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lv B |
Year: |
2021 |
Journal: |
J Cell Biol |
Title: |
E3 ubiquitin ligase Wwp1 regulates ciliary dynamics of the Hedgehog receptor Smoothened. |
Volume: |
220 |
Issue: |
9 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Lv B |
Year: |
2022 |
Journal: |
J Cell Sci |
Title: |
Arih2 regulates Hedgehog signaling through smoothened ubiquitylation and ER-associated degradation. |
Volume: |
135 |
Issue: |
16 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Chen XL |
Year: |
2014 |
Journal: |
Mol Cell Biol |
Title: |
Patched-1 proapoptotic activity is downregulated by modification of K1413 by the E3 ubiquitin-protein ligase Itchy homolog. |
Volume: |
34 |
Issue: |
20 |
Pages: |
3855-66 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yin Y |
Year: |
2018 |
Journal: |
Endocrinology |
Title: |
Heparan Sulfate Proteoglycan Sulfation Regulates Uterine Differentiation and Signaling During Embryo Implantation. |
Volume: |
159 |
Issue: |
6 |
Pages: |
2459-2472 |
|
•
•
•
•
•
|
Publication |
First Author: |
Echevarría-Andino ML |
Year: |
2022 |
Journal: |
Dev Biol |
Title: |
CDON contributes to Hedgehog-dependent patterning and growth of the developing limb. |
Volume: |
493 |
|
Pages: |
1-11 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hollier PL |
Year: |
2021 |
Journal: |
Cardiovasc Res |
Title: |
Full-length Dhh and N-terminal Shh act as competitive antagonists to regulate angiogenesis and vascular permeability. |
Volume: |
117 |
Issue: |
12 |
Pages: |
2489-2501 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhu G |
Year: |
2017 |
Journal: |
Cancer Res |
Title: |
PTEN Signaling in the Postnatal Perivascular Progenitor Niche Drives Medulloblastoma Formation. |
Volume: |
77 |
Issue: |
1 |
Pages: |
123-133 |
|
•
•
•
•
•
|
Publication |
First Author: |
Gurung B |
Year: |
2013 |
Journal: |
Cancer Res |
Title: |
Menin epigenetically represses Hedgehog signaling in MEN1 tumor syndrome. |
Volume: |
73 |
Issue: |
8 |
Pages: |
2650-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Baht GS |
Year: |
2014 |
Journal: |
J Orthop Res |
Title: |
Activation of hedgehog signaling during fracture repair enhances osteoblastic-dependent matrix formation. |
Volume: |
32 |
Issue: |
4 |
Pages: |
581-6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Simon L |
Year: |
2009 |
Journal: |
Endocrinology |
Title: |
Stromal progesterone receptors mediate induction of Indian Hedgehog (IHH) in uterine epithelium and its downstream targets in uterine stroma. |
Volume: |
150 |
Issue: |
8 |
Pages: |
3871-6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bae GU |
Year: |
2011 |
Journal: |
Am J Hum Genet |
Title: |
Mutations in CDON, encoding a hedgehog receptor, result in holoprosencephaly and defective interactions with other hedgehog receptors. |
Volume: |
89 |
Issue: |
2 |
Pages: |
231-40 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lau CI |
Year: |
2017 |
Journal: |
Oncotarget |
Title: |
The kinesin motor protein Kif7 is required for T-cell development and normal MHC expression on thymic epithelial cells (TEC) in the thymus. |
Volume: |
8 |
Issue: |
15 |
Pages: |
24163-24176 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yamada Y |
Year: |
2020 |
Journal: |
Neuroscience |
Title: |
Gli3 is a Key Factor in the Schwann Cells from Both Intact and Injured Peripheral Nerves. |
Volume: |
432 |
|
Pages: |
229-239 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yasuda T |
Year: |
2012 |
Journal: |
J Dent Res |
Title: |
Muenke syndrome mutation, FgfR3P²⁴⁴R, causes TMJ defects. |
Volume: |
91 |
Issue: |
7 |
Pages: |
683-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Grachtchouk M |
Year: |
2006 |
Journal: |
Am J Pathol |
Title: |
Odontogenic keratocysts arise from quiescent epithelial rests and are associated with deregulated hedgehog signaling in mice and humans. |
Volume: |
169 |
Issue: |
3 |
Pages: |
806-14 |
|
•
•
•
•
•
|
Publication |
First Author: |
Liu P |
Year: |
2020 |
Journal: |
PLoS Biol |
Title: |
NRF2 negatively regulates primary ciliogenesis and hedgehog signaling. |
Volume: |
18 |
Issue: |
2 |
Pages: |
e3000620 |
|
•
•
•
•
•
|
Publication |
First Author: |
Rudigier LJ |
Year: |
2017 |
Journal: |
PLoS One |
Title: |
Ex vivo cultures combined with vivo-morpholino induced gene knockdown provide a system to assess the role of WT1 and GATA4 during gonad differentiation. |
Volume: |
12 |
Issue: |
4 |
Pages: |
e0176296 |
|
•
•
•
•
•
|
Publication |
First Author: |
Toejing P |
Year: |
2023 |
Journal: |
Int J Mol Sci |
Title: |
Accelerated Bone Loss in Transgenic Mice Expressing Constitutively Active TGF-β Receptor Type I. |
Volume: |
24 |
Issue: |
13 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Yu S |
Year: |
2020 |
Journal: |
Cell Prolif |
Title: |
Circadian BMAL1 regulates mandibular condyle development by hedgehog pathway. |
Volume: |
53 |
Issue: |
1 |
Pages: |
e12727 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lee H |
Year: |
2016 |
Journal: |
Biochem Biophys Res Commun |
Title: |
Ciliary smoothened-mediated noncanonical hedgehog signaling promotes tubulin acetylation. |
Volume: |
480 |
Issue: |
4 |
Pages: |
574-579 |
|
•
•
•
•
•
|
Publication |
First Author: |
Nilsson M |
Year: |
2000 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Induction of basal cell carcinomas and trichoepitheliomas in mice overexpressing GLI-1. |
Volume: |
97 |
Issue: |
7 |
Pages: |
3438-43 |
|
•
•
•
•
•
|
Publication |
First Author: |
Niemann C |
Year: |
2003 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Indian hedgehog and beta-catenin signaling: role in the sebaceous lineage of normal and neoplastic mammalian epidermis. |
Volume: |
100 Suppl 1 |
|
Pages: |
11873-80 |
|
•
•
•
•
•
|
Publication |
First Author: |
Athar M |
Year: |
2004 |
Journal: |
Cancer Res |
Title: |
Inhibition of smoothened signaling prevents ultraviolet B-induced basal cell carcinomas through regulation of Fas expression and apoptosis. |
Volume: |
64 |
Issue: |
20 |
Pages: |
7545-52 |
|
•
•
•
•
•
|
Publication |
First Author: |
Meng Q |
Year: |
2014 |
Journal: |
PLoS One |
Title: |
Expression of signaling components in embryonic eyelid epithelium. |
Volume: |
9 |
Issue: |
2 |
Pages: |
e87038 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bijlsma MF |
Year: |
2012 |
Journal: |
Sci Signal |
Title: |
Hedgehog-stimulated chemotaxis is mediated by smoothened located outside the primary cilium. |
Volume: |
5 |
Issue: |
238 |
Pages: |
ra60 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wijaya J |
Year: |
2020 |
Journal: |
Cancer Res |
Title: |
An ABC Transporter Drives Medulloblastoma Pathogenesis by Regulating Sonic Hedgehog Signaling. |
Volume: |
80 |
Issue: |
7 |
Pages: |
1524-1537 |
|
•
•
•
•
•
|
Publication |
First Author: |
Dhanyamraju PK |
Year: |
2015 |
Journal: |
Mol Cancer Ther |
Title: |
Histone deacetylase 6 represents a novel drug target in the oncogenic Hedgehog signaling pathway. |
Volume: |
14 |
Issue: |
3 |
Pages: |
727-39 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tang C |
Year: |
2022 |
Journal: |
Theranostics |
Title: |
Hedgehog signaling is controlled by Rac1 activity. |
Volume: |
12 |
Issue: |
3 |
Pages: |
1303-1320 |
|
•
•
•
•
•
|
Publication |
First Author: |
Huang GJ |
Year: |
2012 |
Journal: |
Vitam Horm |
Title: |
ZFP932 suppresses cellular Hedgehog response and Patched1 transcription. |
Volume: |
88 |
|
Pages: |
309-32 |
|
•
•
•
•
•
|
Publication |
First Author: |
Giacomini A |
Year: |
2015 |
Journal: |
Neurobiol Dis |
Title: |
Inhibition of APP gamma-secretase restores Sonic Hedgehog signaling and neurogenesis in the Ts65Dn mouse model of Down syndrome. |
Volume: |
82 |
|
Pages: |
385-396 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chapouly C |
Year: |
2020 |
Journal: |
Arterioscler Thromb Vasc Biol |
Title: |
Desert Hedgehog-Driven Endothelium Integrity Is Enhanced by Gas1 (Growth Arrest-Specific 1) but Negatively Regulated by Cdon (Cell Adhesion Molecule-Related/Downregulated by Oncogenes). |
Volume: |
40 |
Issue: |
12 |
Pages: |
e336-e349 |
|
•
•
•
•
•
|
Publication |
First Author: |
Liu X |
Year: |
2017 |
Journal: |
Bone |
Title: |
Exogenous hedgehog antagonist delays but does not prevent fracture healing in young mice. |
Volume: |
103 |
|
Pages: |
241-251 |
|
•
•
•
•
•
|
Publication |
First Author: |
Rahman MM |
Year: |
2018 |
Journal: |
Cancer Res |
Title: |
A Novel Mechanism for Activation of GLI1 by Nuclear SMO That Escapes Anti-SMO Inhibitors. |
Volume: |
78 |
Issue: |
10 |
Pages: |
2577-2588 |
|
•
•
•
•
•
|
Publication |
First Author: |
Niu C |
Year: |
2019 |
Journal: |
Autophagy |
Title: |
Metformin alleviates hyperglycemia-induced endothelial impairment by downregulating autophagy via the Hedgehog pathway. |
Volume: |
15 |
Issue: |
5 |
Pages: |
843-870 |
|
•
•
•
•
•
|