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Search results 1 to 96 out of 96 for B9d1

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Hits by Pathway

Hits by Category

Hits by Strain

Type Details Score
Gene
27077 | B9D1
Type: gene
Organism: human
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Gene
549063 | b9d1
Type: gene
Organism: frog, western clawed
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Gene
287383 | B9d1
Type: gene
Organism: rat
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Gene
479519 | B9D1
Type: gene
Organism: dog, domestic
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Gene
742196 | B9D1
Type: gene
Organism: chimpanzee
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Gene
505335 | B9D1
Type: gene
Organism: cattle
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Gene
416525 | B9D1
Type: gene
Organism: chicken
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Gene
554150 | b9d1
Type: gene
Organism: zebrafish
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Gene
702949 | B9D1
Type: gene
Organism: macaque, rhesus
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Protein Coding Gene
MGI:1351471 | B9d1
Type: protein_coding_gene
Organism: mouse, laboratory
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GXD Expression
GXD Expression
     
Probe: MGI:6369977
Assay Type: RT-PCR
Annotation Date: 2019-11-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1603915
Stage: TS15
Assay Id: MGI:6370128
Age: embryonic day 9.5
Specimen Label: B9d1 +/+
Detected: true
Specimen Num: 2
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GXD Expression
GXD Expression
     
Probe: MGI:6369977
Assay Type: RT-PCR
Annotation Date: 2019-11-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1603915
Stage: TS15
Assay Id: MGI:6370128
Age: embryonic day 9.5
Specimen Label: B9d1 +/-
Detected: true
Specimen Num: 3
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GXD Expression
GXD Expression
     
Probe: MGI:6369977
Assay Type: RT-PCR
Annotation Date: 2019-11-08
Strength: Absent
Sex: Not Specified
Emaps: EMAPS:1603915
Stage: TS15
Assay Id: MGI:6370128
Age: embryonic day 9.5
Specimen Label: B9d1 -/-
Detected: false
Specimen Num: 4
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GXD Expression
GXD Expression
     
Probe: MGI:6369977
Assay Type: RT-PCR
Annotation Date: 2019-11-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1603915
Stage: TS15
Assay Id: MGI:6370129
Age: embryonic day 9.5
Specimen Label: B9d1 +/+
Detected: true
Specimen Num: 1
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GXD Expression
GXD Expression
     
Probe: MGI:6369977
Assay Type: RT-PCR
Annotation Date: 2019-11-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1603915
Stage: TS15
Assay Id: MGI:6370129
Age: embryonic day 9.5
Specimen Label: B9d1 +/-
Detected: true
Specimen Num: 2
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GXD Expression
GXD Expression
     
Probe: MGI:6369977
Assay Type: RT-PCR
Annotation Date: 2019-11-08
Strength: Absent
Sex: Not Specified
Emaps: EMAPS:1603915
Stage: TS15
Assay Id: MGI:6370129
Age: embryonic day 9.5
Specimen Label: B9d1 -/-
Detected: false
Specimen Num: 3
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Publication
21763481 | J:178421
First Author: Dowdle WE
Year: 2011
Journal: Am J Hum Genet
Title: Disruption of a ciliary B9 protein complex causes Meckel syndrome.
Volume: 89
Issue: 1
Pages: 94-110
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Publication
22179047 | J:178978
First Author: Chih B
Year: 2011
Journal: Nat Cell Biol
Title: A ciliopathy complex at the transition zone protects the cilia as a privileged membrane domain.
Volume: 14
Issue: 1
Pages: 61-72
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Publication
25869670 | J:233509
First Author: Roberson EC
Year: 2015
Journal: J Cell Biol
Title: TMEM231, mutated in orofaciodigital and Meckel syndromes, organizes the ciliary transition zone.
Volume: 209
Issue: 1
Pages: 129-42
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Protein Coding Gene
MGP_CAROLIEiJ_G0016479 | -
Type: protein_coding_gene
Organism: Mus caroli
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Protein Coding Gene
MGP_129S1SvImJ_G0018441 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AJ_G0018410 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AKRJ_G0018380 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_BALBcJ_G0018381 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C3HHeJ_G0018194 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGI_C57BL6J_1351471 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C57BL6NJ_G0018833 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CASTEiJ_G0017751 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CBAJ_G0018168 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_DBA2J_G0018277 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_FVBNJ_G0018268 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_LPJ_G0018350 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NODShiLtJ_G0018292 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NZOHlLtJ_G0018874 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PWKPhJ_G0017524 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_WSBEiJ_G0017803 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PahariEiJ_G0017609 | -
Type: protein_coding_gene
Organism: Mus pahari
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Protein Coding Gene
MGP_SPRETEiJ_G0017314 | -
Type: protein_coding_gene
Organism: Mus spretus
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GXD Expression
GXD Expression
     
Probe: MGI:6781693
Assay Type: RT-PCR
Annotation Date: 2021-10-25
Strength: Present
Sex: Not Specified
Emaps: EMAPS:3673015
Stage: TS15
Assay Id: MGI:6781740
Age: embryonic day 9.5
Specimen Label: pSHF
Detected: true
Specimen Num: 1
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GXD Expression
GXD Expression
     
Probe: MGI:6781693
Assay Type: RT-PCR
Annotation Date: 2021-10-25
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1603915
Stage: TS15
Assay Id: MGI:6781740
Age: embryonic day 9.5
Specimen Label: embryo
Detected: true
Specimen Num: 2
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Publication
- | J:59217
   
First Author: Miyashita H
Year: 1999
Journal: GenBank Submission
Title: Mus musculus mRNA for B9, complete cds
Pages: AB030483
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Publication
21565611 | J:173396
First Author: Sang L
Year: 2011
Journal: Cell
Title: Mapping the NPHP-JBTS-MKS protein network reveals ciliopathy disease genes and pathways.
Volume: 145
Issue: 4
Pages: 513-28
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Publication
21725307 | J:176174
First Author: Garcia-Gonzalo FR
Year: 2011
Journal: Nat Genet
Title: A transition zone complex regulates mammalian ciliogenesis and ciliary membrane composition.
Volume: 43
Issue: 8
Pages: 776-84
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Publication
27340223 | J:237132
First Author: Burnicka-Turek O
Year: 2016
Journal: Hum Mol Genet
Title: Cilia gene mutations cause atrioventricular septal defects by multiple mechanisms.
Volume: 25
Issue: 14
Pages: 3011-3028
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Publication
- | J:165965
     
First Author: Mouse Genome Informatics and the Europhenome Mouse Phenotyping Resource
Year: 2010
Journal: Database Release
Title: Obtaining and Loading Phenotype Annotations from Europhenome
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Publication
- | J:136110
     
First Author: Velocigene
Year: 2008
Journal: MGI Direct Data Submission
Title: Alleles produced for the KOMP project by Velocigene (Regeneron Pharmaceuticals)
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Publication
- | J:155845
     
First Author: Wellcome Trust Sanger Institute
Year: 2010
Journal: MGI Direct Data Submission
Title: Alleles produced for the EUCOMM and EUCOMMTools projects by the Wellcome Trust Sanger Institute
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Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
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Publication
11217851 | J:65060
First Author: Kawai J
Year: 2001
Journal: Nature
Title: Functional annotation of a full-length mouse cDNA collection.
Volume: 409
Issue: 6821
Pages: 685-90
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Publication
38355793 | J:345621
First Author: Adams DJ
Year: 2024
Journal: Nature
Title: Genetic determinants of micronucleus formation in vivo.
Volume: 627
Issue: 8002
Pages: 130-136
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Publication
- | J:23000
       
First Author: MGD Nomenclature Committee
Year: 1995
Title: Nomenclature Committee Use
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Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
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Publication
21677750 | J:173534
First Author: Skarnes WC
Year: 2011
Journal: Nature
Title: A conditional knockout resource for the genome-wide study of mouse gene function.
Volume: 474
Issue: 7351
Pages: 337-42
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Publication
- | J:342587
       
First Author: AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators
Year: 2011
Title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
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Publication
- | J:60000
       
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
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Publication
- | J:68900
     
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
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Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
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Publication
- | J:164563
       
First Author: The Gene Ontology Consortium
Year: 2010
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
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Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
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Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
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Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:57747
     
First Author: MGI Genome Annotation Group and UniGene Staff
Year: 2015
Journal: Database Download
Title: MGI-UniGene Interconnection Effort
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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GXD Expression
GXD Expression
     
Probe: MGI:6369990
Assay Type: Western blot
Annotation Date: 2019-11-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1603917
Stage: TS17
Assay Id: MGI:6370130
Age: embryonic day 10.5
Specimen Label: B9d1 -/-
Detected: true
Specimen Num: 2
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GXD Expression
GXD Expression
     
Probe: MGI:6369990
Assay Type: Western blot
Annotation Date: 2019-11-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1603917
Stage: TS17
Assay Id: MGI:6370130
Age: embryonic day 10.5
Specimen Label: B9d1 +/-
Detected: true
Specimen Num: 3
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GXD Expression
GXD Expression
     
Probe: MGI:6369990
Assay Type: Western blot
Annotation Date: 2019-11-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1603917
Stage: TS17
Assay Id: MGI:6370130
Age: embryonic day 10.5
Specimen Label: B9d1 -/-
Detected: true
Specimen Num: 4
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DO Term
DOID:0110996 | Joubert syndrome 27
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Protein
Q9R1S0
Organism: Mus musculus/domesticus
Length: 204  
Fragment?: false
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Publication
16415886 | J:105230
First Author: Kyttälä M
Year: 2006
Journal: Nat Genet
Title: MKS1, encoding a component of the flagellar apparatus basal body proteome, is mutated in Meckel syndrome.
Volume: 38
Issue: 2
Pages: 155-7
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Protein
Q5SW45
Organism: Mus musculus/domesticus
Length: 561  
Fragment?: false
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Protein
Q3UK10
Organism: Mus musculus/domesticus
Length: 175  
Fragment?: false
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Protein
Q3UUM5
Organism: Mus musculus/domesticus
Length: 247  
Fragment?: false
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Protein
B2KGP7
Organism: Mus musculus/domesticus
Length: 561  
Fragment?: false
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Protein
A0A0U1RNW5
Organism: Mus musculus/domesticus
Length: 115  
Fragment?: false
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Protein
Q5NCM9
Organism: Mus musculus/domesticus
Length: 118  
Fragment?: true
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Protein
Q284W0
Organism: Mus musculus/domesticus
Length: 561  
Fragment?: false
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Protein
A0A0U1RPE5
Organism: Mus musculus/domesticus
Length: 65  
Fragment?: true
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Publication
17127412 | -
 
First Author: Ponsard C
Year: 2007
Journal: Front Biosci
Title: Identification of ICIS-1, a new protein involved in cilia stability.
Volume: 12
Pages: 1661-9
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Publication
18337471 | -
First Author: Williams CL
Year: 2008
Journal: Mol Biol Cell
Title: Functional redundancy of the B9 proteins and nephrocystins in Caenorhabditis elegans ciliogenesis.
Volume: 19
Issue: 5
Pages: 2154-68
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Publication
27646273 | -
First Author: Vieillard J
Year: 2016
Journal: J Cell Biol
Title: Transition zone assembly and its contribution to axoneme formation in Drosophila male germ cells.
Volume: 214
Issue: 7
Pages: 875-89
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Publication
26490104 | -
First Author: Slaats GG
Year: 2016
Journal: J Med Genet
Title: MKS1 regulates ciliary INPP5E levels in Joubert syndrome.
Volume: 53
Issue: 1
Pages: 62-72
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Publication
27577095 | -
First Author: Pratt MB
Year: 2016
Journal: J Cell Sci
Title: Drosophila sensory cilia lacking MKS proteins exhibit striking defects in development but only subtle defects in adults.
Volume: 129
Issue: 20
Pages: 3732-3743
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Protein Domain
IPR010796 | C2_B9-type_dom
Type: Family
Description: The C2 domain is one of the most prevalent eukaryotic lipid-binding domains deployed in diverse functional contexts. Distinct versions of the C2 domain have been recognized, the classical C2, the PI3K-type, the tensin-type, the B9-type, the DOCK-type, the NT-type and the Aida-type. Despite their limited sequence similarity, all C2 domains contain at their core a compact β-sandwich composed of two four-stranded β-sheets with highly variable inter-strand regions that might contain one or more α-helices. One feature that is highly conserved in the C2 domains is the pair of hydrophobic residues on the upper part of the β-sheet, which are involved in imparting a curvature of the sheet that allows formation of a concave ligand-binding area [].This entry represents a family of B9-type C2 domain containing proteins, found in ciliary basal body associated proteins. Although its specific function is unknown, a cilia-specific role has been suggested for the poorly characterised B9-type C2 domain [, , ].Some proteins known to contain a B9-type C2 domain are listed below:Mammalian Tectonic-like complex member MKS1 (also known as Meckel syndrome 1 , MKS1). The tectonic-like complex is localised at the transition zone of primary cilia and acts as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes. It is involved in centrosome migration to the apical cell surface during early ciliogenesis [, , ]. The homologue in Drosophila melanogaster is required for ciliary structure and function [, ]. Mammalian proteins B9D1 and B9D2. B9D1 is required for ciliogenesis and sonic hedgehog/SHH signaling [, ].
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Publication
17185389 | J:159145
First Author: Dawe HR
Year: 2007
Journal: Hum Mol Genet
Title: The Meckel-Gruber Syndrome proteins MKS1 and meckelin interact and are required for primary cilium formation.
Volume: 16
Issue: 2
Pages: 173-86
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Publication
19515853 | J:151414
First Author: Tammachote R
Year: 2009
Journal: Hum Mol Genet
Title: Ciliary and centrosomal defects associated with mutation and depletion of the Meckel syndrome genes MKS1 and MKS3.
Volume: 18
Issue: 17
Pages: 3311-23
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Publication
20713135 | -
First Author: Zhang D
Year: 2010
Journal: Gene
Title: Identification of novel families and classification of the C2 domain superfamily elucidate the origin and evolution of membrane targeting activities in eukaryotes.
Volume: 469
Issue: 1-2
Pages: 18-30
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MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

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