|  Help  |  About  |  Contact Us

Search our database by keyword

Examples

  • Search this entire website. Enter identifiers, names or keywords for genes, diseases, strains, ontology terms, etc. (e.g. Pax6, Parkinson, ataxia)
  • Use OR to search for either of two terms (e.g. OR mus) or quotation marks to search for phrases (e.g. "dna binding").
  • Boolean search syntax is supported: e.g. Balb* for partial matches or mus AND NOT embryo to exclude a term

Search results 1 to 100 out of 119 for C1d

<< First    < Previous  |  Next >    Last >>
0.044s

Categories

Hits by Pathway

Hits by Strain

Hits by Category

Type Details Score
Gene
10438 | C1D
Type: gene
Organism: human
•
•
•
•
•
Gene
745296 | C1D
Type: gene
Organism: chimpanzee
•
•
•
•
•
Gene
506667 | C1D
Type: gene
Organism: cattle
•
•
•
•
•
Gene
421267 | C1D
Type: gene
Organism: chicken
•
•
•
•
•
Gene
474329 | c1d
Type: gene
Organism: zebrafish
•
•
•
•
•
Gene
698450 | C1D
Type: gene
Organism: macaque, rhesus
•
•
•
•
•
Gene
549178 | c1d
Type: gene
Organism: frog, western clawed
•
•
•
•
•
Gene
612549 | C1D
Type: gene
Organism: dog, domestic
•
•
•
•
•
Gene
289810 | C1d
Type: gene
Organism: rat
•
•
•
•
•
Protein Coding Gene
MGI:1927354 | C1d
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Publication
9469821 | J:46576
First Author: Nehls P
Year: 1998
Journal: Nucleic Acids Res
Title: cDNA cloning, recombinant expression and characterization of polypetides with exceptional DNA affinity.
Volume: 26
Issue: 5
Pages: 1160-6
•
•
•
•
•
Protein Coding Gene
MGP_CAROLIEiJ_G0016110 | -
Type: protein_coding_gene
Organism: Mus caroli
•
•
•
•
•
Protein Coding Gene
MGP_129S1SvImJ_G0018059 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_AJ_G0018032 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_AKRJ_G0017996 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_BALBcJ_G0018000 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_C3HHeJ_G0017814 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGI_C57BL6J_1927354 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_C57BL6NJ_G0018452 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_CASTEiJ_G0017375 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_CBAJ_G0017788 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_DBA2J_G0017898 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_FVBNJ_G0017890 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_LPJ_G0017969 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_NODShiLtJ_G0017916 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_NZOHlLtJ_G0018493 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_PWKPhJ_G0017155 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_WSBEiJ_G0017429 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_PahariEiJ_G0016781 | -
Type: protein_coding_gene
Organism: Mus pahari
•
•
•
•
•
Protein Coding Gene
MGP_SPRETEiJ_G0016952 | -
Type: protein_coding_gene
Organism: Mus spretus
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:4845202
Assay Type: RNA in situ
Annotation Date: 2010-12-22
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:1640515
Pattern: Not Specified
Stage: TS15
Assay Id: MGI:4848866
Age: embryonic day 9.5
Note: There is moderate staining in the anterior and posterior limb.
Specimen Label: Table S4 - E9.5
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:4845202
Assay Type: RNA in situ
Annotation Date: 2010-12-22
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:1640517
Pattern: Not Specified
Stage: TS17
Assay Id: MGI:4848866
Age: embryonic day 10.5
Note: There is moderate staining in the anterior and posterior limb.
Specimen Label: Table S4 - E10.5
Detected: true
Specimen Num: 2
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:4845202
Assay Type: RNA in situ
Annotation Date: 2010-12-22
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:1640519
Pattern: Regionally restricted
Stage: TS19
Assay Id: MGI:4848866
Age: embryonic day 11.5
Note: Staining is present in the antero-distal, posterior-distal and interdigital regions of the limb.
Specimen Label: Table S4 - E11.5
Detected: true
Specimen Num: 3
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:4845202
Assay Type: RNA in situ
Annotation Date: 2010-12-22
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:3270515
Pattern: Not Specified
Stage: TS15
Assay Id: MGI:4848866
Age: embryonic day 9.5
Note: There is moderate staining in the distal and proximal limb.
Specimen Label: Table S4 - E9.5
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:4845202
Assay Type: RNA in situ
Annotation Date: 2010-12-22
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:3270517
Pattern: Not Specified
Stage: TS17
Assay Id: MGI:4848866
Age: embryonic day 10.5
Note: There is moderate staining in the progress zone and the middle and proximal limb.
Specimen Label: Table S4 - E10.5
Detected: true
Specimen Num: 2
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:4845202
Assay Type: RNA in situ
Annotation Date: 2010-12-22
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:3270519
Pattern: Regionally restricted
Stage: TS19
Assay Id: MGI:4848866
Age: embryonic day 11.5
Note: Staining is present in the middle limb.
Specimen Label: Table S4 - E11.5
Detected: true
Specimen Num: 3
•
•
•
•
•
Publication
9405624 | J:46724
First Author: Zamir I
Year: 1997
Journal: Proc Natl Acad Sci U S A
Title: Cloning and characterization of a corepressor and potential component of the nuclear hormone receptor repression complex.
Volume: 94
Issue: 26
Pages: 14400-5
•
•
•
•
•
Gene
554049 | C1DP1
Type: gene
Organism: human
•
•
•
•
•
Gene
642521 | C1DP3
Type: gene
Organism: human
•
•
•
•
•
Gene
642538 | C1DP2
Type: gene
Organism: human
•
•
•
•
•
Gene
727879 | C1DP4
Type: gene
Organism: human
•
•
•
•
•
Gene
106481729 | C1DP5
Type: gene
Organism: human
•
•
•
•
•
Protein
O35473
Organism: Mus musculus/domesticus
Length: 141  
Fragment?: false
•
•
•
•
•
Protein
A0A0A0MQK7
Organism: Mus musculus/domesticus
Length: 118  
Fragment?: true
•
•
•
•
•
Publication
16919269 | J:112701
First Author: Bailey PJ
Year: 2006
Journal: Exp Cell Res
Title: A global genomic transcriptional code associated with CNS-expressed genes.
Volume: 312
Issue: 16
Pages: 3108-19
•
•
•
•
•
Publication
- | J:238766
     
First Author: Shanghai Model Organisms Center
Year: 2017
Journal: MGI Direct Data Submission
Title: Information obtained from the Shanghai Model Organisms Center (SMOC), Shanghai, China
•
•
•
•
•
Publication
- | J:265051
     
First Author: MGI and IMPC
Year: 2018
Journal: Database Release
Title: MGI Load of Endonuclease-Mediated Alleles (CRISPR) from the International Mouse Phenotyping Consortium (IMPC)
•
•
•
•
•
Publication
20059953 | J:156017
First Author: Yokoyama S
Year: 2009
Journal: Dev Cell
Title: A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58.
Volume: 17
Issue: 6
Pages: 836-48
•
•
•
•
•
Publication
- | J:211773
     
First Author: Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC)
Year: 2014
Journal: Database Release
Title: Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database
•
•
•
•
•
Publication
- | J:57656
     
First Author: Lennon G
Year: 1999
Journal: Database Download
Title: WashU-HHMI Mouse EST Project
•
•
•
•
•
Publication
18799693 | J:142754
First Author: Hansen GM
Year: 2008
Journal: Genome Res
Title: Large-scale gene trapping in C57BL/6N mouse embryonic stem cells.
Volume: 18
Issue: 10
Pages: 1670-9
•
•
•
•
•
Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
•
•
•
•
•
Publication
- | J:342604
       
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
•
•
•
•
•
Publication
14610273 | J:86696
First Author: Zambrowicz BP
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
Volume: 100
Issue: 24
Pages: 14109-14
•
•
•
•
•
Publication
- | J:342605
       
First Author: GOA curators
Year: 2016
Title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
•
•
•
•
•
Publication
- | J:60000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2000
Title: Gene Ontology Annotation by electronic association of SwissProt Keywords with GO terms
•
•
•
•
•
Publication
- | J:141210
     
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
•
•
•
•
•
Publication
11217851 | J:65060
First Author: Kawai J
Year: 2001
Journal: Nature
Title: Functional annotation of a full-length mouse cDNA collection.
Volume: 409
Issue: 6821
Pages: 685-90
•
•
•
•
•
Publication
- | J:68900
     
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
•
•
•
•
•
Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
•
•
•
•
•
Publication
- | J:164563
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Title: Human to Mouse ISO GO annotation transfer
•
•
•
•
•
Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
•
•
•
•
•
Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
•
•
•
•
•
Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
•
•
•
•
•
Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
•
•
•
•
•
Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
•
•
•
•
•
Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
•
•
•
•
•
Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
•
•
•
•
•
Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
•
•
•
•
•
Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
•
•
•
•
•
Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
•
•
•
•
•
Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
•
•
•
•
•
Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
•
•
•
•
•
Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
•
•
•
•
•
Publication
12421302 | -
First Author: Erdemir T
Year: 2002
Journal: Mol Microbiol
Title: Saccharomyces cerevisiae C1D is implicated in both non-homologous DNA end joining and homologous recombination.
Volume: 46
Issue: 4
Pages: 947-57
•
•
•
•
•
Publication
17412707 | -
First Author: Schilders G
Year: 2007
Journal: Nucleic Acids Res
Title: C1D and hMtr4p associate with the human exosome subunit PM/Scl-100 and are involved in pre-rRNA processing.
Volume: 35
Issue: 8
Pages: 2564-72
•
•
•
•
•
Allele
C1d<em1Smoc> | MGI:7288549
Name: C1D nuclear receptor co-repressor; endonuclease-mediated mutation 1, Shanghai Model Organisms Center
Allele Type: Endonuclease-mediated
Attribute String: Null/knockout
•
•
•
•
•
UniProt Feature
UniProt Feature
Begin: 1
Description: Nuclear nucleic acid-binding protein C1D
Type: chain
End: 141
•
•
•
•
•
Publication
10362552 | -
 
First Author: Rothbarth K
Year: 1999
Journal: J Cell Sci
Title: Induction of apoptosis by overexpression of the DNA-binding and DNA-PK-activating protein C1D.
Volume: 112 ( Pt 13)
Pages: 2223-32
•
•
•
•
•
Publication
12972615 | -
First Author: Mitchell P
Year: 2003
Journal: Mol Cell Biol
Title: Rrp47p is an exosome-associated protein required for the 3' processing of stable RNAs.
Volume: 23
Issue: 19
Pages: 6982-92
•
•
•
•
•
Publication
15148393 | -
First Author: Chen ES
Year: 2004
Journal: Proc Natl Acad Sci U S A
Title: Cti1/C1D interacts with condensin SMC hinge and supports the DNA repair function of condensin.
Volume: 101
Issue: 21
Pages: 8078-83
•
•
•
•
•
Protein Domain
IPR011082 | Exosome-assoc_fac/DNA_repair
Type: Family
Description: The CD1 family of proteins includes exosome-associated cofactor Rrp47, and DNA double-strand repair protein C1D. Both of these proteins are implicated in DNA double-strand repair and in nuclear exosome activity.Rrp47 functions in nuclear RNA processing. Rrp47 is associated with nuclear exosomes, and with the nuclear exosome-specific 3'-5' exonuclease Rrp6.Rrp47 appears to be a substrate-specific nuclear cofactor that is required for the 3' processing of pre-rRNAs, snoRNAs and snRNAs (specifically U4 and U5) []. However, Rrp47 is not required for cytoplasmic exosome mRNA degradation. It also appears to have a role in DNA strand repair.C1D is an inducible nuclear matrix proteins that interacts with and activates the DNA-dependent protein kinase essential for DNA double-strand repair and V(D)J recombination []. C1D can interact with condensin, which is required for DNA repair and replication checkpoint control []. C1D also binds to nuclear exosomes and might regulate their functional activities, as it has RNA-binding activity [].
•
•
•
•
•
Gene
706956 | LOC706956
Type: gene
Organism: macaque, rhesus
•
•
•
•
•
Gene
106993445 | LOC106993445
Type: gene
Organism: macaque, rhesus
•
•
•
•
•
Gene
734871 | c1d.L
Type: gene
Organism: frog, African clawed
•
•
•
•
•
Allele
C1d<+> | MGI:3605336
 
Name: C1D nuclear receptor co-repressor; wild type
Allele Type: Not Specified
•
•
•
•
•
Allele
C1d<Gt(OST201137)Lex> | MGI:4229246
 
Name: C1D nuclear receptor co-repressor; gene trap OST201137, Lexicon Genetics
Allele Type: Gene trapped
•
•
•
•
•
Allele
C1d<em2(IMPC)H> | MGI:6451106
Name: C1D nuclear receptor co-repressor; endonuclease-mediated mutation 2, Harwell
Allele Type: Endonuclease-mediated
Attribute String: Null/knockout
•
•
•
•
•
Allele
C1d<Gt(OST293182)Lex> | MGI:4268113
 
Name: C1D nuclear receptor co-repressor; gene trap OST293182, Lexicon Genetics
Allele Type: Gene trapped
•
•
•
•
•
Allele
C1d<em1(IMPC)H> | MGI:6451110
Name: C1D nuclear receptor co-repressor; endonuclease-mediated mutation 1, Harwell
Allele Type: Endonuclease-mediated
Attribute String: Null/knockout
•
•
•
•
•
Allele
C1d<Gt(OST293174)Lex> | MGI:4268108
 
Name: C1D nuclear receptor co-repressor; gene trap OST293174, Lexicon Genetics
Allele Type: Gene trapped
•
•
•
•
•
Allele
C1d<Gt(OST293186)Lex> | MGI:4268116
 
Name: C1D nuclear receptor co-repressor; gene trap OST293186, Lexicon Genetics
Allele Type: Gene trapped
•
•
•
•
•
Allele
C1d<Gt(OST446054)Lex> | MGI:4319978
 
Name: C1D nuclear receptor co-repressor; gene trap OST446054, Lexicon Genetics
Allele Type: Gene trapped
•
•
•
•
•
Allele
C1d<Gt(OST293184)Lex> | MGI:4268115
 
Name: C1D nuclear receptor co-repressor; gene trap OST293184, Lexicon Genetics
Allele Type: Gene trapped
•
•
•
•
•
Allele
C1d<em2Gpt> | MGI:7296078
Name: C1D nuclear receptor co-repressor; endonuclease-mediated mutation 2, GemPharmatech Co., Ltd
Allele Type: Endonuclease-mediated
Attribute String: Null/knockout
•
•
•
•
•
Allele
C1d<Gt(OST315611)Lex> | MGI:4277211
 
Name: C1D nuclear receptor co-repressor; gene trap OST315611, Lexicon Genetics
Allele Type: Gene trapped
•
•
•
•
•
Strain
MGI:6717138 | C57BL/6NTac-C1d<em1(IMPC)H>/H
Attribute String: coisogenic, endonuclease-mediated mutation, mutant strain
•
•
•
•
•
Allele
C1d<Gt(EUCE0280c02)Hmgu> | MGI:4391223
 
Name: C1D nuclear receptor co-repressor; gene trap EUCE0280c02, Helmholtz Zentrum Muenchen GmbH
Allele Type: Gene trapped
•
•
•
•
•
Allele
C1d<Gt(E285G01)Wrst> | MGI:3910209
 
Name: C1D nuclear receptor co-repressor; gene trap E285G01, German Gene Trap Consortium
Allele Type: Gene trapped
•
•
•
•
•
Allele
C1d<Gt(IST14334E9)Tigm> | MGI:5224742
 
Name: C1D nuclear receptor co-repressor; gene trap IST14334E9, Texas A&M Institute for Genomic Medicine
Allele Type: Gene trapped
•
•
•
•
•




MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

Copyright © 2017 by The Jackson Laboratory. All Rights Reserved

© 2002 - 2017 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom