Type |
Details |
Score |
Gene |
Type: |
gene |
Organism: |
Not Specified |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
human |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
frog, western clawed |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
chimpanzee |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
hamster, golden |
|
•
•
•
•
•
|
Gene |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
dog, domestic |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
cattle |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
chicken |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
macaque, rhesus |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7789024 |
Assay Type: |
RNA in situ |
Annotation Date: |
2024-12-26 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1914328 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:7790586 |
Age: |
postnatal day 10 |
Image: |
3C Col1a1 WT |
|
Specimen Label: |
3C Col1a1 WT |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7789024 |
Assay Type: |
RNA in situ |
Annotation Date: |
2024-12-26 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1914325 |
Pattern: |
Not Specified |
Stage: |
TS25 |
Assay Id: |
MGI:7790586 |
Age: |
embryonic day 17.5 |
Image: |
S2B Col1a1 Opt-/- |
Note: |
Expression not consistently altered compared to wild type. |
Specimen Label: |
S2B Col1a1 Opt-/- |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6695330 |
Assay Type: |
RNA in situ |
Annotation Date: |
2023-09-25 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1736422 |
Pattern: |
Not Specified |
Stage: |
TS22 |
Assay Id: |
MGI:7530040 |
Age: |
embryonic day 14.5 |
Image: |
4a Col1a1 E14.5 |
|
Specimen Label: |
4a Col1a1 E14.5 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6695330 |
Assay Type: |
RNA in situ |
Annotation Date: |
2023-09-25 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1736423 |
Pattern: |
Not Specified |
Stage: |
TS23 |
Assay Id: |
MGI:7530040 |
Age: |
embryonic day 15.5 |
Image: |
4a Col1a1 E15.5 |
|
Specimen Label: |
4a Col1a1 E15.5 |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3821258 |
Assay Type: |
RNA in situ |
Annotation Date: |
2009-01-15 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:2622022 |
Pattern: |
Not Specified |
Stage: |
TS22 |
Assay Id: |
MGI:3826116 |
Age: |
embryonic day 14.5 |
Image: |
Additional file 4 Col1a1 |
|
Specimen Label: |
Additional file 4 Col1a1 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7789024 |
Assay Type: |
RNA in situ |
Annotation Date: |
2024-12-26 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1914328 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:7790586 |
Age: |
postnatal day 10 |
Image: |
3C Col1a1 Opt-/- |
|
Specimen Label: |
3C Col1a1 Opt-/- |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7789024 |
Assay Type: |
RNA in situ |
Annotation Date: |
2024-12-26 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1914325 |
Pattern: |
Not Specified |
Stage: |
TS25 |
Assay Id: |
MGI:7790586 |
Age: |
embryonic day 17.5 |
Image: |
S2B Col1a1 WT |
|
Specimen Label: |
S2B Col1a1 WT |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
Publication |
First Author: |
Fenton SP |
Year: |
1993 |
Journal: |
Biochim Biophys Acta |
Title: |
Genomic sequence of mouse COL1A1 encoding the collagen propeptides. |
Volume: |
1216 |
Issue: |
3 |
Pages: |
469-74 |
|
•
•
•
•
•
|
Publication |
First Author: |
Claeys L |
Year: |
2023 |
Journal: |
Front Endocrinol (Lausanne) |
Title: |
Exploration of the skeletal phenotype of the Col1a1 (+/Mov13) mouse model for haploinsufficient osteogenesis imperfecta type 1. |
Volume: |
14 |
|
Pages: |
1145125 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7447506 |
Assay Type: |
RNA in situ |
Annotation Date: |
2023-03-28 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1910424 |
Pattern: |
Not Specified |
Stage: |
TS24 |
Assay Id: |
MGI:7448497 |
Age: |
embryonic day 16.5 |
|
|
Specimen Label: |
2b Col1a1 CTL |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7447506 |
Assay Type: |
RNA in situ |
Annotation Date: |
2023-03-28 |
Strength: |
Weak |
Sex: |
Not Specified |
Emaps: |
EMAPS:1910424 |
Pattern: |
Regionally restricted |
Stage: |
TS24 |
Assay Id: |
MGI:7448497 |
Age: |
embryonic day 16.5 |
|
Note: |
Expression in first ossification center decreased compared with control. |
Specimen Label: |
2b Col1a1 cKO |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
Publication |
First Author: |
Richmond JM |
Year: |
2023 |
Journal: |
J Invest Dermatol |
Title: |
CXCL9 Links Skin Inflammation and Fibrosis through CXCR3-Dependent Upregulation of Col1a1 in Fibroblasts. |
Volume: |
143 |
Issue: |
7 |
Pages: |
1138-1146.e12 |
|
•
•
•
•
•
|
Publication |
First Author: |
Simon MP |
Year: |
1997 |
Journal: |
Nat Genet |
Title: |
Deregulation of the platelet-derived growth factor B-chain gene via fusion with collagen gene COL1A1 in dermatofibrosarcoma protuberans and giant-cell fibroblastoma. |
Volume: |
15 |
Issue: |
1 |
Pages: |
95-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Rousseau J |
Year: |
2014 |
Journal: |
Eur J Hum Genet |
Title: |
Allele-specific Col1a1 silencing reduces mutant collagen in fibroblasts from Brtl mouse, a model for classical osteogenesis imperfecta. |
Volume: |
22 |
Issue: |
5 |
Pages: |
667-74 |
|
•
•
•
•
•
|
Publication |
First Author: |
Rahkonen O |
Year: |
2004 |
Journal: |
Circ Res |
Title: |
Mice with a deletion in the first intron of the Col1a1 gene develop age-dependent aortic dissection and rupture. |
Volume: |
94 |
Issue: |
1 |
Pages: |
83-90 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tabeta K |
Year: |
2017 |
Journal: |
Sci Rep |
Title: |
An ENU-induced splice site mutation of mouse Col1a1 causing recessive osteogenesis imperfecta and revealing a novel splicing rescue. |
Volume: |
7 |
Issue: |
1 |
Pages: |
11717 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tabeta K |
Year: |
2008 |
Journal: |
MGI Direct Data Submission |
Title: |
Seal, a mouse Col1a1 mutation resulting in mild fragility of bone and soft tissue |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Hormuzdi SG |
Year: |
1999 |
Journal: |
Matrix Biol |
Title: |
Mice with a targeted intronic deletion in the Col1a1 gene respond to bleomycin-induced pulmonary fibrosis with increased expression of the mutant allele. |
Volume: |
18 |
Issue: |
3 |
Pages: |
287-94 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6170124 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-07-25 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:1689424 |
Pattern: |
Not Specified |
Stage: |
TS24 |
Assay Id: |
MGI:6190015 |
Age: |
embryonic day 15.5 |
|
|
Specimen Label: |
Table S2 - E15.5 - Col1a1 |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6170124 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-07-25 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:1689428 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6190015 |
Age: |
postnatal day 14 |
|
|
Specimen Label: |
Table S2 - P14 - Col1a1 |
Detected: |
true |
Specimen Num: |
6 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6170124 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-07-25 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1689419 |
Pattern: |
Not Specified |
Stage: |
TS19 |
Assay Id: |
MGI:6190015 |
Age: |
embryonic day 11.5 |
|
|
Specimen Label: |
Table S2 - E11.5 - Col1a1 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6170124 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-07-25 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1689421 |
Pattern: |
Not Specified |
Stage: |
TS21 |
Assay Id: |
MGI:6190015 |
Age: |
embryonic day 13.5 |
|
|
Specimen Label: |
Table S2 - E13.5 - Col1a1 |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6170124 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-07-25 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:1689426 |
Pattern: |
Not Specified |
Stage: |
TS26 |
Assay Id: |
MGI:6190015 |
Age: |
embryonic day 18.5 |
|
|
Specimen Label: |
Table S2 - E18.5 - Col1a1 |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6170124 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-07-25 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:1689428 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6190015 |
Age: |
postnatal day 4 |
|
|
Specimen Label: |
Table S2 - P4 - Col1a1 |
Detected: |
true |
Specimen Num: |
5 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6170124 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-07-25 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:1689428 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6190015 |
Age: |
postnatal day 28 |
|
|
Specimen Label: |
Table S2 - P28 - Col1a1 |
Detected: |
true |
Specimen Num: |
7 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
589
 |
Fragment?: |
true |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6718483 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2021-07-01 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1787127 |
Pattern: |
Not Specified |
Stage: |
TS27 |
Assay Id: |
MGI:6718609 |
Age: |
postnatal day 0 |
Image: |
S13 WT |
Note: |
Expression did not completely overlap with Acta2. Acta2 appeared to largely be excluded from Col1a1 expressing cells. |
Specimen Label: |
S13 WT |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
Publication |
First Author: |
Cox CS |
Year: |
2018 |
Journal: |
Cell Metab |
Title: |
Mitohormesis in Mice via Sustained Basal Activation of Mitochondrial and Antioxidant Signaling. |
Volume: |
28 |
Issue: |
5 |
Pages: |
776-786.e5 |
|
•
•
•
•
•
|
Publication |
First Author: |
Cassidy LD |
Year: |
2020 |
Journal: |
Nat Commun |
Title: |
Temporal inhibition of autophagy reveals segmental reversal of ageing with increased cancer risk. |
Volume: |
11 |
Issue: |
1 |
Pages: |
307 |
|
•
•
•
•
•
|
Publication |
First Author: |
Li K |
Year: |
2020 |
Journal: |
Nat Commun |
Title: |
Interrogation of enhancer function by enhancer-targeting CRISPR epigenetic editing. |
Volume: |
11 |
Issue: |
1 |
Pages: |
485 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhang H |
Year: |
2020 |
Journal: |
Cancer Discov |
Title: |
Gain-of-Function RHOA Mutations Promote Focal Adhesion Kinase Activation and Dependency in Diffuse Gastric Cancer. |
Volume: |
10 |
Issue: |
2 |
Pages: |
288-305 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wan M |
Year: |
2013 |
Journal: |
Development |
Title: |
Inducible mouse models illuminate parameters influencing epigenetic inheritance. |
Volume: |
140 |
Issue: |
4 |
Pages: |
843-52 |
|
•
•
•
•
•
|
Publication |
First Author: |
Strauss WM |
Year: |
1992 |
Journal: |
EMBO J |
Title: |
Molecular complementation of a collagen mutation in mammalian cells using yeast artificial chromosomes. |
Volume: |
11 |
Issue: |
2 |
Pages: |
417-22 |
|
•
•
•
•
•
|
Publication |
First Author: |
Strauss WM |
Year: |
1993 |
Journal: |
Science |
Title: |
Germ line transmission of a yeast artificial chromosome spanning the murine alpha 1(I) collagen locus. |
Volume: |
259 |
Issue: |
5103 |
Pages: |
1904-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Osorno R |
Year: |
2012 |
Journal: |
Development |
Title: |
The developmental dismantling of pluripotency is reversed by ectopic Oct4 expression. |
Volume: |
139 |
Issue: |
13 |
Pages: |
2288-98 |
|
•
•
•
•
•
|
Publication |
First Author: |
Paliwal P |
Year: |
2011 |
Journal: |
Chem Biol |
Title: |
Inhibitors of tyrosine phosphatases and apoptosis reprogram lineage-marked differentiated muscle to myogenic progenitor cells. |
Volume: |
18 |
Issue: |
9 |
Pages: |
1153-66 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yamada Y |
Year: |
2010 |
Journal: |
Cell Stem Cell |
Title: |
Rest promotes the early differentiation of mouse ESCs but is not required for their maintenance. |
Volume: |
6 |
Issue: |
1 |
Pages: |
10-5 |
|
•
•
•
•
•
|
Publication |
First Author: |
Rossert J |
Year: |
1995 |
Journal: |
J Cell Biol |
Title: |
Separate cis-acting DNA elements of the mouse pro-alpha 1(I) collagen promoter direct expression of reporter genes to different type I collagen-producing cells in transgenic mice. |
Volume: |
129 |
Issue: |
5 |
Pages: |
1421-32 |
|
•
•
•
•
•
|
Publication |
First Author: |
Cassidy LD |
Year: |
2018 |
Journal: |
Autophagy |
Title: |
A novel Atg5-shRNA mouse model enables temporal control of Autophagy in vivo. |
Volume: |
14 |
Issue: |
7 |
Pages: |
1256-1266 |
|
•
•
•
•
•
|
Publication |
First Author: |
An J |
Year: |
2017 |
Journal: |
Stem Cell Reports |
Title: |
Mesenchymal to Epithelial Transition Mediated by CDH1 Promotes Spontaneous Reprogramming of Male Germline Stem Cells to Pluripotency. |
Volume: |
8 |
Issue: |
2 |
Pages: |
446-459 |
|
•
•
•
•
•
|
Publication |
First Author: |
Foudi A |
Year: |
2014 |
Journal: |
J Exp Med |
Title: |
Distinct, strict requirements for Gfi-1b in adult bone marrow red cell and platelet generation. |
Volume: |
211 |
Issue: |
5 |
Pages: |
909-27 |
|
•
•
•
•
•
|
Publication |
First Author: |
Levine MS |
Year: |
2017 |
Journal: |
Dev Cell |
Title: |
Centrosome Amplification Is Sufficient to Promote Spontaneous Tumorigenesis in Mammals. |
Volume: |
40 |
Issue: |
3 |
Pages: |
313-322.e5 |
|
•
•
•
•
•
|
Publication |
First Author: |
Holl D |
Year: |
2011 |
Journal: |
PLoS One |
Title: |
Transgenic overexpression of Tcfap2c/AP-2gamma results in liver failure and intestinal dysplasia. |
Volume: |
6 |
Issue: |
7 |
Pages: |
e22034 |
|
•
•
•
•
•
|
Publication |
First Author: |
Piazzolla D |
Year: |
2014 |
Journal: |
Nat Commun |
Title: |
Lineage-restricted function of the pluripotency factor NANOG in stratified epithelia. |
Volume: |
5 |
|
Pages: |
4226 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhao W |
Year: |
2013 |
Journal: |
Cell |
Title: |
Jmjd3 inhibits reprogramming by upregulating expression of INK4a/Arf and targeting PHF20 for ubiquitination. |
Volume: |
152 |
Issue: |
5 |
Pages: |
1037-50 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kratochwil K |
Year: |
1993 |
Journal: |
Dev Dyn |
Title: |
Restricted expression of Mov13 mutant alpha 1(I) collagen gene in osteoblasts and its consequences for bone development. |
Volume: |
198 |
Issue: |
4 |
Pages: |
273-83 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lyu J |
Year: |
2024 |
Journal: |
Science |
Title: |
A glutamine metabolic switch supports erythropoiesis. |
Volume: |
386 |
Issue: |
6723 |
Pages: |
eadh9215 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wesemann DR |
Year: |
2012 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Reprogramming IgH isotype-switched B cells to functional-grade induced pluripotent stem cells. |
Volume: |
109 |
Issue: |
34 |
Pages: |
13745-50 |
|
•
•
•
•
•
|
Publication |
First Author: |
Klagkou E |
Year: |
2024 |
Journal: |
Int J Mol Sci |
Title: |
An Unbiased Approach to Identifying Cellular Reprogramming-Inducible Enhancers. |
Volume: |
25 |
Issue: |
23 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Ho R |
Year: |
2013 |
Journal: |
Cell Rep |
Title: |
Stage-specific regulation of reprogramming to induced pluripotent stem cells by Wnt signaling and T cell factor proteins. |
Volume: |
3 |
Issue: |
6 |
Pages: |
2113-26 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hiler D |
Year: |
2015 |
Journal: |
Cell Stem Cell |
Title: |
Quantification of Retinogenesis in 3D Cultures Reveals Epigenetic Memory and Higher Efficiency in iPSCs Derived from Rod Photoreceptors. |
Volume: |
17 |
Issue: |
1 |
Pages: |
101-15 |
|
•
•
•
•
•
|
Publication |
First Author: |
Sardina JL |
Year: |
2018 |
Journal: |
Cell Stem Cell |
Title: |
Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate. |
Volume: |
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