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Search results 1 to 100 out of 119 for Ctr9

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Categories

Hits by Pathway

Hits by Category

Hits by Strain

Type Details Score
Gene
9646 | CTR9
Type: gene
Organism: human
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Gene
448648 | ctr9
Type: gene
Organism: frog, western clawed
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Gene
293184 | Ctr9
Type: gene
Organism: rat
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Gene
466442 | CTR9
Type: gene
Organism: chimpanzee
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Gene
534265 | CTR9
Type: gene
Organism: cattle
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Gene
100855495 | CTR9
Type: gene
Organism: dog, domestic
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Gene
423035 | CTR9
Type: gene
Organism: chicken
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Gene
100036549 | ctr9
Type: gene
Organism: zebrafish
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Gene
705748 | CTR9
Type: gene
Organism: macaque, rhesus
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Protein Domain
IPR031101 | Ctr9
Type: Family
Description: This entry includes budding yeast RNA polymerase-associated protein Ctr9 and its homologues from other yeasts, animals and plants. The homologue in fission yeast is known as tetratricopeptide repeat protein 1 (Tpr1) [].Budding yeast Ctr9 is part of the Paf1 complex, an RNA polymerase II-associated protein complex containing Paf1, Cdc73, Ctr9, Rtf1 and Leo1 []. Paf1 complex is involved in histone modifications, transcription elongation and other gene expression processes that include transcript site selection []. Human Paf1 complex (Paf1C) consists of Paf1, Cdc73, Ctr9, Rtf1, Leo1 and Wdr61 (Ski8). As in yeast, the human Paf1C has a central role in co-transcriptional histone modifications [].Arabidopsis Paf1C related proteins such as VIP4 (Leo1), VIP5 (Rtf1), ELF7 (Paf1), ELF8 (Ctr9) and ATXR7 (Set1) are required for the induction of seed dormancy. They control both germination and flowering time [].
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Protein Coding Gene
MGI:109345 | Ctr9
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein
Q6IQZ4
Organism: Mus musculus/domesticus
Length: 82  
Fragment?: false
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Protein
Q05DK2
Organism: Mus musculus/domesticus
Length: 939  
Fragment?: true
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Protein
Q05CJ7
Organism: Mus musculus/domesticus
Length: 936  
Fragment?: true
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Protein
Q62018
Organism: Mus musculus/domesticus
Length: 1173  
Fragment?: false
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Publication
24420920 | J:209381
First Author: Yoo HS
Year: 2014
Journal: J Immunol
Title: Transcriptional regulator CTR9 inhibits Th17 differentiation via repression of IL-17 expression.
Volume: 192
Issue: 4
Pages: 1440-8
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Publication
24385927 | -
First Author: Mbogning J
Year: 2013
Journal: PLoS Genet
Title: The PAF complex and Prf1/Rtf1 delineate distinct Cdk9-dependent pathways regulating transcription elongation in fission yeast.
Volume: 9
Issue: 12
Pages: e1004029
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Publication
11884586 | -
First Author: Mueller CL
Year: 2002
Journal: Mol Cell Biol
Title: Ctr9, Rtf1, and Leo1 are components of the Paf1/RNA polymerase II complex.
Volume: 22
Issue: 7
Pages: 1971-80
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Publication
1913663 | -
First Author: Isom H
Year: 1991
Journal: Cancer Res
Title: Workshop report from the Division of Research Grants, National Institutes of Health. The role of chromosome rearrangements, deletions, and point mutations in cancer--a Pathology B Study Section workshop.
Volume: 51
Issue: 19
Pages: 5440-4
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Publication
20178742 | -
First Author: Kim J
Year: 2010
Journal: Cell
Title: The human PAF1 complex acts in chromatin transcription elongation both independently and cooperatively with SII/TFIIS.
Volume: 140
Issue: 4
Pages: 491-503
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Publication
21799800 | -
First Author: Liu Y
Year: 2011
Journal: PLoS One
Title: Identification of the Arabidopsis REDUCED DORMANCY 2 gene uncovers a role for the polymerase associated factor 1 complex in seed dormancy.
Volume: 6
Issue: 7
Pages: e22241
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Publication
17911113 | J:183965
First Author: Youn MY
Year: 2007
Journal: J Biol Chem
Title: hCTR9, a component of Paf1 complex, participates in the transcription of interleukin 6-responsive genes through regulation of STAT3-DNA interactions.
Volume: 282
Issue: 48
Pages: 34727-34
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Publication
8636124 | J:32101
First Author: Malek SN
Year: 1996
Journal: J Biol Chem
Title: p150TSP, a conserved nuclear phosphoprotein that contains multiple tetratricopeptide repeats and binds specifically to SH2 domains.
Volume: 271
Issue: 12
Pages: 6952-62
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GXD Expression
GXD Expression
     
Probe: MGI:5636732
Assay Type: Western blot
Annotation Date: 2015-05-22
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1754421
Stage: TS21
Assay Id: MGI:5636787
Age: embryonic day 13.0
Specimen Label: E13
Detected: true
Specimen Num: 2
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GXD Expression
GXD Expression
     
Probe: MGI:5636732
Assay Type: Western blot
Annotation Date: 2015-05-22
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1754426
Stage: TS26
Assay Id: MGI:5636787
Age: embryonic day 19.0
Specimen Label: E19
Detected: true
Specimen Num: 5
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GXD Expression
GXD Expression
     
Probe: MGI:5636732
Assay Type: Western blot
Annotation Date: 2015-05-22
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1754428
Stage: TS28
Assay Id: MGI:5636787
Age: postnatal adult
Specimen Label: adult
Detected: true
Specimen Num: 8
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Protein Coding Gene
MGP_CAROLIEiJ_G0030329 | -
Type: protein_coding_gene
Organism: Mus caroli
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Protein Coding Gene
MGP_129S1SvImJ_G0032863 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AJ_G0032846 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AKRJ_G0032778 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_BALBcJ_G0032851 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C3HHeJ_G0032561 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGI_C57BL6J_109345 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C57BL6NJ_G0033357 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CASTEiJ_G0031889 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CBAJ_G0032534 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_DBA2J_G0032686 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_FVBNJ_G0032639 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_LPJ_G0032780 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NODShiLtJ_G0032671 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NZOHlLtJ_G0033377 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PWKPhJ_G0031596 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_WSBEiJ_G0032002 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PahariEiJ_G0013541 | -
Type: protein_coding_gene
Organism: Mus pahari
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Protein Coding Gene
MGP_SPRETEiJ_G0031444 | -
Type: protein_coding_gene
Organism: Mus spretus
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GXD Expression
GXD Expression
       
Probe: MGI:5636732
Assay Type: Western blot
Annotation Date: 2015-05-22
Strength: Not Specified
Sex: Not Specified
Emaps: EMAPS:1691018
Stage: TS18
Assay Id: MGI:5636787
Age: embryonic day 11.0
Specimen Label: E11
Specimen Num: 1
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GXD Expression
GXD Expression
     
Probe: MGI:5636732
Assay Type: Western blot
Annotation Date: 2015-05-22
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1754423
Stage: TS23
Assay Id: MGI:5636787
Age: embryonic day 15.0
Specimen Label: E15
Detected: true
Specimen Num: 3
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GXD Expression
GXD Expression
     
Probe: MGI:5636732
Assay Type: Western blot
Annotation Date: 2015-05-22
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1754425
Stage: TS25
Assay Id: MGI:5636787
Age: embryonic day 17.0
Specimen Label: E17
Detected: true
Specimen Num: 4
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GXD Expression
GXD Expression
     
Probe: MGI:5636732
Assay Type: Western blot
Annotation Date: 2015-05-22
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1754427
Stage: TS27
Assay Id: MGI:5636787
Age: postnatal day 0
Specimen Label: P0
Detected: true
Specimen Num: 6
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GXD Expression
GXD Expression
     
Probe: MGI:5636732
Assay Type: Western blot
Annotation Date: 2015-05-22
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1754428
Stage: TS28
Assay Id: MGI:5636787
Age: postnatal day 5
Specimen Label: P5
Detected: true
Specimen Num: 7
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Publication
27306982 | J:280771
First Author: Lee H
Year: 2016
Journal: Am J Physiol Renal Physiol
Title: Cln 3-requiring 9 is a negative regulator of Th17 pathway-driven inflammation in anti-glomerular basement membrane glomerulonephritis.
Volume: 311
Issue: 3
Pages: F505-19
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Publication
19345177 | J:149841
First Author: Ding L
Year: 2009
Journal: Cell Stem Cell
Title: A genome-scale RNAi screen for Oct4 modulators defines a role of the Paf1 complex for embryonic stem cell identity.
Volume: 4
Issue: 5
Pages: 403-15
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Publication
27749823 | J:283190
First Author: Strikoudis A
Year: 2016
Journal: Nat Cell Biol
Title: Regulation of transcriptional elongation in pluripotency and cell differentiation by the PHD-finger protein Phf5a.
Volume: 18
Issue: 11
Pages: 1127-1138
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Publication
27864380 | J:237500
First Author: Osipovich AB
Year: 2016
Journal: Development
Title: Setd5 is essential for mammalian development and the co-transcriptional regulation of histone acetylation.
Volume: 143
Issue: 24
Pages: 4595-4607
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Publication
24036311 | J:203796
First Author: Zhang K
Year: 2013
Journal: Dev Biol
Title: CTR9/PAF1c regulates molecular lineage identity, histone H3K36 trimethylation and genomic imprinting during preimplantation development.
Volume: 383
Issue: 1
Pages: 15-27
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Publication
23791194 | J:201693
First Author: Zhang C
Year: 2013
Journal: Neuron
Title: The X-linked intellectual disability protein PHF6 associates with the PAF1 complex and regulates neuronal migration in the mammalian brain.
Volume: 78
Issue: 6
Pages: 986-93
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Publication
10352232 | J:55429
First Author: Burbelo PD
Year: 1999
Journal: Gene
Title: Cloning, central nervous system expression and chromosomal mapping of the mouse PAK-1 and PAK-3 genes.
Volume: 232
Issue: 2
Pages: 209-15
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Publication
27869233 | J:244597
 
First Author: Cui W
Year: 2016
Journal: Sci Rep
Title: Towards Functional Annotation of the Preimplantation Transcriptome: An RNAi Screen in Mammalian Embryos.
Volume: 6
Pages: 37396
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Publication
10441734 | J:56825
First Author: Kozak CA
Year: 1999
Journal: Mamm Genome
Title: Identification and genetic mapping of differentially expressed genes in mice differing at the If1 interferon regulatory locus.
Volume: 10
Issue: 9
Pages: 853-7
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Publication
27626380 | J:236599
First Author: Dickinson ME
Year: 2016
Journal: Nature
Title: High-throughput discovery of novel developmental phenotypes.
Volume: 537
Issue: 7621
Pages: 508-514
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Publication
- | J:204739
     
First Author: International Knockout Mouse Consortium
Year: 2014
Journal: Database Download
Title: MGI download of modified allele data from IKMC and creation of new knockout alleles
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Publication
30973865 | J:274872
First Author: Ingham NJ
Year: 2019
Journal: PLoS Biol
Title: Mouse screen reveals multiple new genes underlying mouse and human hearing loss.
Volume: 17
Issue: 4
Pages: e3000194
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Publication
- | J:155845
     
First Author: Wellcome Trust Sanger Institute
Year: 2010
Journal: MGI Direct Data Submission
Title: Alleles produced for the EUCOMM and EUCOMMTools projects by the Wellcome Trust Sanger Institute
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Publication
- | J:204812
     
First Author: International Mouse Strain Resource
Year: 2014
Journal: Database Download
Title: MGI download of germline transmission data for alleles from IMSR strain data
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Publication
- | J:211773
     
First Author: Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC)
Year: 2014
Journal: Database Release
Title: Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database
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Publication
38355793 | J:345621
First Author: Adams DJ
Year: 2024
Journal: Nature
Title: Genetic determinants of micronucleus formation in vivo.
Volume: 627
Issue: 8002
Pages: 130-136
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Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
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Publication
21677750 | J:173534
First Author: Skarnes WC
Year: 2011
Journal: Nature
Title: A conditional knockout resource for the genome-wide study of mouse gene function.
Volume: 474
Issue: 7351
Pages: 337-42
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Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
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Publication
- | J:342604
       
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
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Publication
- | J:85000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Title: MGI Sequence Curation Reference
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Publication
- | J:342587
       
First Author: AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators
Year: 2011
Title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
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Publication
- | J:60000
       
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
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Publication
- | J:342605
       
First Author: GOA curators
Year: 2016
Title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
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Publication
- | J:141210
     
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
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Publication
- | J:23000
       
First Author: MGD Nomenclature Committee
Year: 1995
Title: Nomenclature Committee Use
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Publication
- | J:68900
     
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
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Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
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Publication
- | J:164563
       
First Author: The Gene Ontology Consortium
Year: 2010
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
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Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
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Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:57747
     
First Author: MGI Genome Annotation Group and UniGene Staff
Year: 2015
Journal: Database Download
Title: MGI-UniGene Interconnection Effort
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Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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UniProt Feature
UniProt Feature
Begin: 1
Description: RNA polymerase-associated protein CTR9 homolog
Type: chain
End: 1173
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Gene
108713733 | ctr9.L
Type: gene
Organism: frog, African clawed
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Gene
446236 | ctr9.S
Type: gene
Organism: frog, African clawed
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Protein
Q62018-3
Organism: Mus musculus/domesticus
Length: 1090  
Fragment?: false
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Protein
Q62018-2
Organism: Mus musculus/domesticus
Length: 721  
Fragment?: false
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Allele
Ctr9<+> | MGI:2434326
   
Name: CTR9 homolog, Paf1/RNA polymerase II complex component; wild type
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MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

Copyright © 2017 by The Jackson Laboratory. All Rights Reserved

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Cambridge CB2 3EH, United Kingdom