|  Help  |  About  |  Contact Us

Search our database by keyword

Examples

  • Search this entire website. Enter identifiers, names or keywords for genes, diseases, strains, ontology terms, etc. (e.g. Pax6, Parkinson, ataxia)
  • Use OR to search for either of two terms (e.g. OR mus) or quotation marks to search for phrases (e.g. "dna binding").
  • Boolean search syntax is supported: e.g. Balb* for partial matches or mus AND NOT embryo to exclude a term

Search results 1 to 73 out of 73 for Pcdhga1

0.029s

Categories

Hits by Category

Hits by Strain

Type Details Score
Gene
56114 | PCDHGA1
Type: gene
Organism: human
•
•
•
•
•
Gene
114678921 | PCDHGA1
Type: gene
Organism: macaque, rhesus
•
•
•
•
•
Gene
553129 | Pcdhga1
Type: gene
Organism: rat
•
•
•
•
•
Gene
100034676 | PCDHGA1
Type: gene
Organism: chimpanzee
•
•
•
•
•
Protein Coding Gene
MGI:1935212 | Pcdhga1
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Domain
IPR030736 | PCDHGA1
Type: Family
Description: The clustered protocadherin (Pcdh) family is the largest subgroup of the cadherin superfamily. In mammals, the clustered Pcdh family consists of three gene clusters: Pcdh-alpha, Pcdh-beta, and Pcdh-gamma (Pcdhg) []. The genomic organisation of the human protocadherin gene clusters is remarkably similar to that of immunoglobulin and T-cell receptor genes. The extracellular and transmembrane domains of each protocadherin protein are encoded by an unusually large "variable"region exon, while the intracellular domains are encoded by three small "constant"region exons located downstream from a tandem array of variable region exons [, ]. The clustered Pcdh proteins are predominantly expressed in the brain []. Pcdh cluster genes may contribute to specifying the identity and diversity of individual neurons [].The 22 isoforms of the Pcdhg gene cluster are diversified into A-, B-, and C-types []. This entry represents protocadherin gamma-A1.
•
•
•
•
•
GXD Expression
GXD Expression
   
Probe: MGI:7712172
Assay Type: RT-PCR
Annotation Date: 2024-08-27
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1754428
Stage: TS28
Assay Id: MGI:7712897
Age: postnatal day 30
Image: 1
Specimen Label: Pcdhga1
Detected: true
Specimen Num: 1
•
•
•
•
•
Publication
11230163 | J:67989
First Author: Wu Q
Year: 2001
Journal: Genome Res
Title: Comparative DNA sequence analysis of mouse and human protocadherin gene clusters.
Volume: 11
Issue: 3
Pages: 389-404
•
•
•
•
•
Publication
22884324 | J:188341
First Author: Chen WV
Year: 2012
Journal: Neuron
Title: Functional significance of isoform diversification in the protocadherin gamma gene cluster.
Volume: 75
Issue: 3
Pages: 402-9
•
•
•
•
•
Publication
10380929 | J:86878
First Author: Wu Q
Year: 1999
Journal: Cell
Title: A striking organization of a large family of human neural cadherin-like cell adhesion genes.
Volume: 97
Issue: 6
Pages: 779-90
•
•
•
•
•
Protein
Q91XZ0
Organism: Mus musculus/domesticus
Length: 931  
Fragment?: false
•
•
•
•
•
Protein
A0A0A6YW27
Organism: Mus musculus/domesticus
Length: 810  
Fragment?: false
•
•
•
•
•
Publication
18430161 | -
 
First Author: Yagi T
Year: 2008
Journal: Dev Growth Differ
Title: Clustered protocadherin family.
Volume: 50 Suppl 1
Pages: S131-40
•
•
•
•
•
Publication
22969705 | J:312046
 
First Author: Hirano K
Year: 2012
Journal: Front Mol Neurosci
Title: Single-neuron diversity generated by Protocadherin-β cluster in mouse central and peripheral nervous systems.
Volume: 5
Pages: 90
•
•
•
•
•
Protein Coding Gene
MGP_CAROLIEiJ_G0022181 | -
Type: protein_coding_gene
Organism: Mus caroli
•
•
•
•
•
Protein Coding Gene
MGP_129S1SvImJ_G0024333 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_AJ_G0024301 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_AKRJ_G0024269 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_BALBcJ_G0024300 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_C3HHeJ_G0024066 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGI_C57BL6J_1935212 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_C57BL6NJ_G0024742 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_CASTEiJ_G0023542 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_CBAJ_G0024036 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_DBA2J_G0024166 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_FVBNJ_G0024132 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_LPJ_G0024250 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_NODShiLtJ_G0024163 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_NZOHlLtJ_G0024791 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_PWKPhJ_G0023286 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_WSBEiJ_G0023604 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_PahariEiJ_G0018915 | -
Type: protein_coding_gene
Organism: Mus pahari
•
•
•
•
•
Protein Coding Gene
MGP_SPRETEiJ_G0023091 | -
Type: protein_coding_gene
Organism: Mus spretus
•
•
•
•
•
GXD Expression
GXD Expression
     
Probe: MGI:5779327
Assay Type: Northern blot
Annotation Date: 2016-06-28
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689425
Stage: TS25
Assay Id: MGI:5779369
Age: embryonic day 17.0
Specimen Label: E17
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
     
Probe: MGI:5779327
Assay Type: Northern blot
Annotation Date: 2016-06-28
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689427
Stage: TS27
Assay Id: MGI:5779369
Age: postnatal day 0
Specimen Label: P0
Detected: true
Specimen Num: 2
•
•
•
•
•
GXD Expression
GXD Expression
     
Probe: MGI:5779327
Assay Type: Northern blot
Annotation Date: 2016-06-28
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689427
Stage: TS27
Assay Id: MGI:5779369
Age: postnatal day 3
Specimen Label: P3
Detected: true
Specimen Num: 3
•
•
•
•
•
GXD Expression
GXD Expression
     
Probe: MGI:5779327
Assay Type: Northern blot
Annotation Date: 2016-06-28
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689428
Stage: TS28
Assay Id: MGI:5779369
Age: postnatal day 6
Specimen Label: P6
Detected: true
Specimen Num: 4
•
•
•
•
•
GXD Expression
GXD Expression
     
Probe: MGI:5779327
Assay Type: Northern blot
Annotation Date: 2016-06-28
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689428
Stage: TS28
Assay Id: MGI:5779369
Age: postnatal day 9
Specimen Label: P9
Detected: true
Specimen Num: 5
•
•
•
•
•
GXD Expression
GXD Expression
     
Probe: MGI:5779327
Assay Type: Northern blot
Annotation Date: 2016-06-28
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689428
Stage: TS28
Assay Id: MGI:5779369
Age: postnatal day 14
Specimen Label: P14
Detected: true
Specimen Num: 6
•
•
•
•
•
GXD Expression
GXD Expression
     
Probe: MGI:5779327
Assay Type: Northern blot
Annotation Date: 2016-06-28
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689428
Stage: TS28
Assay Id: MGI:5779369
Age: postnatal day 21
Specimen Label: P21
Detected: true
Specimen Num: 7
•
•
•
•
•
GXD Expression
GXD Expression
     
Probe: MGI:5779327
Assay Type: Northern blot
Annotation Date: 2016-06-28
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689428
Stage: TS28
Assay Id: MGI:5779369
Age: postnatal day 29
Specimen Label: P29
Detected: true
Specimen Num: 8
•
•
•
•
•
GXD Expression
GXD Expression
     
Probe: MGI:5779327
Assay Type: Northern blot
Annotation Date: 2016-06-28
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689428
Stage: TS28
Assay Id: MGI:5779369
Age: postnatal adult
Specimen Label: ad
Detected: true
Specimen Num: 9
•
•
•
•
•
GXD Expression
GXD Expression
   
Probe: MGI:5779327
Assay Type: RNA in situ
Annotation Date: 2016-06-27
Strength: Weak
Sex: Not Specified
Emaps: EMAPS:3521928
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:5779343
Age: postnatal day 9
Specimen Label: 5B
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:5779317
Assay Type: Immunohistochemistry
Annotation Date: 2016-06-28
Strength: Strong
Sex: Not Specified
Emaps: EMAPS:3525728
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:5779404
Age: postnatal day 21
Note: Strong expression in the cell bodies and intense punctate staining in the neuropil.
Specimen Label: 8D/D'/D"
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
   
Probe: MGI:5779317
Assay Type: Immunohistochemistry
Annotation Date: 2016-06-28
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1778728
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:5779404
Age: postnatal day 21
Specimen Label: 8D/D'/D"
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:5779317
Assay Type: Immunohistochemistry
Annotation Date: 2016-06-28
Strength: Strong
Sex: Not Specified
Emaps: EMAPS:1754428
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:5779404
Age: postnatal day 21
Note: Strong expression in the cell bodies and intense punctate staining in the neuropil.
Specimen Label: 8D/D'/D"
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
     
Probe: MGI:5779327
Assay Type: RNA in situ
Annotation Date: 2016-06-27
Strength: Absent
Sex: Not Specified
Emaps: EMAPS:3522128
Stage: TS28
Assay Id: MGI:5779343
Age: postnatal day 9
Specimen Label: 5B
Detected: false
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
     
Probe: MGI:5779327
Assay Type: RNA in situ
Annotation Date: 2016-06-27
Strength: Absent
Sex: Not Specified
Emaps: EMAPS:3523528
Stage: TS28
Assay Id: MGI:5779343
Age: postnatal day 9
Specimen Label: 5B
Detected: false
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
   
Probe: MGI:5779317
Assay Type: Immunohistochemistry
Annotation Date: 2016-06-28
Strength: Present
Sex: Not Specified
Emaps: EMAPS:3284528
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:5779404
Age: postnatal day 21
Specimen Label: 8D/D'/D"
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
   
Probe: MGI:5779327
Assay Type: RNA in situ
Annotation Date: 2016-06-27
Strength: Weak
Sex: Not Specified
Emaps: EMAPS:3522328
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:5779343
Age: postnatal day 9
Specimen Label: 5B
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
   
Probe: MGI:5779327
Assay Type: RNA in situ
Annotation Date: 2016-06-27
Strength: Weak
Sex: Not Specified
Emaps: EMAPS:3521628
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:5779343
Age: postnatal day 9
Specimen Label: 5B
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
   
Probe: MGI:5779317
Assay Type: Immunohistochemistry
Annotation Date: 2016-06-28
Strength: Present
Sex: Not Specified
Emaps: EMAPS:3280928
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:5779404
Age: postnatal day 21
Specimen Label: 8D/D'/D"
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
   
Probe: MGI:5779327
Assay Type: RNA in situ
Annotation Date: 2016-06-27
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689428
Pattern: Widespread
Stage: TS28
Assay Id: MGI:5779343
Age: postnatal
Specimen Label: not shown
Detected: true
Specimen Num: 2
•
•
•
•
•
GXD Expression
GXD Expression
   
Probe: MGI:5779327
Assay Type: RNA in situ
Annotation Date: 2016-06-27
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689428
Pattern: Widespread
Stage: TS28
Assay Id: MGI:5779343
Age: postnatal adult
Specimen Label: not shown
Detected: true
Specimen Num: 3
•
•
•
•
•
GXD Expression
GXD Expression
   
Probe: MGI:5779327
Assay Type: RNA in situ
Annotation Date: 2016-06-27
Strength: Weak
Sex: Not Specified
Emaps: EMAPS:1689425
Pattern: Not Specified
Stage: TS25
Assay Id: MGI:5779343
Age: embryonic day 17.0
Specimen Label: not shown
Detected: true
Specimen Num: 4
•
•
•
•
•
Publication
17403907 | J:122331
First Author: Bonn S
Year: 2007
Journal: Mol Cell Biol
Title: Combinatorial expression of alpha- and gamma-protocadherins alters their presenilin-dependent processing.
Volume: 27
Issue: 11
Pages: 4121-32
•
•
•
•
•
Publication
15964765 | J:100649
First Author: Frank M
Year: 2005
Journal: Mol Cell Neurosci
Title: Differential expression of individual gamma-protocadherins during mouse brain development.
Volume: 29
Issue: 4
Pages: 603-16
•
•
•
•
•
Publication
23515096 | J:195283
 
First Author: Ledderose J
Year: 2013
Journal: Sci Rep
Title: Maturation of postnatally generated olfactory bulb granule cells depends on functional γ-protocadherin expression.
Volume: 3
Pages: 1514
•
•
•
•
•
Publication
17572674 | J:123007
First Author: Wu S
Year: 2007
Journal: Nat Genet
Title: Toward simpler and faster genome-wide mutagenesis in mice.
Volume: 39
Issue: 7
Pages: 922-30
•
•
•
•
•
Publication
15347688 | J:94992
First Author: Murata Y
Year: 2004
Journal: J Biol Chem
Title: Interaction with protocadherin-gamma regulates the cell surface expression of protocadherin-alpha.
Volume: 279
Issue: 47
Pages: 49508-16
•
•
•
•
•
Publication
32633719 | J:293992
   
First Author: Mancia Leon WR
Year: 2020
Journal: Elife
Title: Clustered gamma-protocadherins regulate cortical interneuron programmed cell death.
Volume: 9
•
•
•
•
•
Publication
19029045 | J:142349
First Author: Prasad T
Year: 2008
Journal: Development
Title: A differential developmental pattern of spinal interneuron apoptosis during synaptogenesis: insights from genetic analyses of the protocadherin-gamma gene cluster.
Volume: 135
Issue: 24
Pages: 4153-64
•
•
•
•
•
Publication
- | J:265051
     
First Author: MGI and IMPC
Year: 2018
Journal: Database Release
Title: MGI Load of Endonuclease-Mediated Alleles (CRISPR) from the International Mouse Phenotyping Consortium (IMPC)
•
•
•
•
•
Publication
38355793 | J:345621
First Author: Adams DJ
Year: 2024
Journal: Nature
Title: Genetic determinants of micronucleus formation in vivo.
Volume: 627
Issue: 8002
Pages: 130-136
•
•
•
•
•
Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
•
•
•
•
•
Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
•
•
•
•
•
Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
•
•
•
•
•
Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
•
•
•
•
•
Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
•
•
•
•
•
Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
•
•
•
•
•
Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
•
•
•
•
•
Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
•
•
•
•
•
Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
•
•
•
•
•




MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

Copyright © 2017 by The Jackson Laboratory. All Rights Reserved

© 2002 - 2017 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom