Type |
Details |
Score |
Gene |
Type: |
gene |
Organism: |
human |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
frog, western clawed |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
macaque, rhesus |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis inanimals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts.PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. Pex19 is involved in membrane assembly and maintenance and functions as a receptor and chaperone of peroxisomal membrane proteins (PMPs) []. |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
dog, domestic |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
chimpanzee |
|
•
•
•
•
•
|
Gene |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
cattle |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
zebrafish |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
299
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
299
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Schueller N |
Year: |
2010 |
Journal: |
EMBO J |
Title: |
The peroxisomal receptor Pex19p forms a helical mPTS recognition domain. |
Volume: |
29 |
Issue: |
15 |
Pages: |
2491-500 |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
Mus caroli |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
Mus pahari |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
Mus spretus |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3655267 |
Assay Type: |
RT-PCR |
Annotation Date: |
2006-09-21 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1689428 |
|
Stage: |
TS28 |
Assay Id: |
MGI:3655277 |
Age: |
postnatal adult |
|
|
Specimen Label: |
Adult |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3655267 |
Assay Type: |
RT-PCR |
Annotation Date: |
2006-09-21 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1603913 |
|
Stage: |
TS13 |
Assay Id: |
MGI:3655277 |
Age: |
embryonic day 8.5 |
|
|
Specimen Label: |
+/+ |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3655267 |
Assay Type: |
RT-PCR |
Annotation Date: |
2006-09-21 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1603915 |
|
Stage: |
TS15 |
Assay Id: |
MGI:3655277 |
Age: |
embryonic day 9.5 |
|
|
Specimen Label: |
+/+ |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3655267 |
Assay Type: |
RT-PCR |
Annotation Date: |
2006-09-21 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1603917 |
|
Stage: |
TS17 |
Assay Id: |
MGI:3655277 |
Age: |
embryonic day 10.5 |
|
|
Specimen Label: |
+/+ |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3655267 |
Assay Type: |
RT-PCR |
Annotation Date: |
2006-09-21 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1603913 |
|
Stage: |
TS13 |
Assay Id: |
MGI:3655277 |
Age: |
embryonic day 8.5 |
|
|
Specimen Label: |
Lp/Lp |
Detected: |
true |
Specimen Num: |
5 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3655267 |
Assay Type: |
RT-PCR |
Annotation Date: |
2006-09-21 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1603915 |
|
Stage: |
TS15 |
Assay Id: |
MGI:3655277 |
Age: |
embryonic day 9.5 |
|
|
Specimen Label: |
Lp/Lp |
Detected: |
true |
Specimen Num: |
6 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3655267 |
Assay Type: |
RT-PCR |
Annotation Date: |
2006-09-21 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1603917 |
|
Stage: |
TS17 |
Assay Id: |
MGI:3655277 |
Age: |
embryonic day 10.5 |
|
|
Specimen Label: |
Lp/Lp |
Detected: |
true |
Specimen Num: |
7 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7567790 |
Assay Type: |
RT-PCR |
Annotation Date: |
2023-12-21 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3185819 |
|
Stage: |
TS19 |
Assay Id: |
MGI:7567800 |
Age: |
embryonic day 11.5 |
Image: |
4 |
|
Specimen Label: |
head |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7567790 |
Assay Type: |
RT-PCR |
Annotation Date: |
2023-12-21 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3185719 |
|
Stage: |
TS19 |
Assay Id: |
MGI:7567800 |
Age: |
embryonic day 11.5 |
Image: |
4 |
|
Specimen Label: |
rostral |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7567790 |
Assay Type: |
RT-PCR |
Annotation Date: |
2023-12-21 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3185719 |
|
Stage: |
TS19 |
Assay Id: |
MGI:7567800 |
Age: |
embryonic day 11.5 |
Image: |
4 |
|
Specimen Label: |
inter-limb |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7567790 |
Assay Type: |
RT-PCR |
Annotation Date: |
2023-12-21 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1674819 |
|
Stage: |
TS19 |
Assay Id: |
MGI:7567800 |
Age: |
embryonic day 11.5 |
Image: |
4 |
|
Specimen Label: |
tail |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3655158 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-09-20 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1616617 |
Pattern: |
Regionally restricted |
Stage: |
TS17 |
Assay Id: |
MGI:3655159 |
Age: |
embryonic day 10.5 |
|
Note: |
Higher expression in the developing motor neurons at the level of the forelimb bud. |
Specimen Label: |
4L, +/+ |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3655158 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-09-20 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1616617 |
Pattern: |
Not Specified |
Stage: |
TS17 |
Assay Id: |
MGI:3655159 |
Age: |
embryonic day 10.5 |
|
Note: |
Expression in this mutant is the same as in wild-type embryos. |
Specimen Label: |
4M, Lp/Lp |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3655158 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-09-20 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1666817 |
Pattern: |
Not Specified |
Stage: |
TS17 |
Assay Id: |
MGI:3655159 |
Age: |
embryonic day 10.5 |
|
|
Specimen Label: |
4L, +/+ |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3655158 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-09-20 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1666817 |
Pattern: |
Not Specified |
Stage: |
TS17 |
Assay Id: |
MGI:3655159 |
Age: |
embryonic day 10.5 |
|
Note: |
Expression in this mutant is the same as in wild-type embryos. |
Specimen Label: |
4M, Lp/Lp |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3655158 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-09-20 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1603917 |
Pattern: |
Not Specified |
Stage: |
TS17 |
Assay Id: |
MGI:3655159 |
Age: |
embryonic day 10.5 |
|
Note: |
Ubiquitous expression. |
Specimen Label: |
4L, +/+ |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3655158 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-09-20 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1603917 |
Pattern: |
Not Specified |
Stage: |
TS17 |
Assay Id: |
MGI:3655159 |
Age: |
embryonic day 10.5 |
|
Note: |
Ubiquitous expression. Expression in this mutant is the same as in wild-type embryos. |
Specimen Label: |
4M, Lp/Lp |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3655158 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-09-20 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1603917 |
Pattern: |
Not Specified |
Stage: |
TS17 |
Assay Id: |
MGI:3655159 |
Age: |
embryonic day 10.5 |
|
Note: |
Ubiquitous expression. |
Specimen Label: |
4N, +/+ |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3655158 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-09-20 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1603917 |
Pattern: |
Not Specified |
Stage: |
TS17 |
Assay Id: |
MGI:3655159 |
Age: |
embryonic day 10.5 |
|
Note: |
Ubiquitous expression. Expression in this mutant is the same as in wild-type embryos. |
Specimen Label: |
4O, Lp/Lp |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3655158 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-09-20 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1603915 |
Pattern: |
Not Specified |
Stage: |
TS15 |
Assay Id: |
MGI:3655159 |
Age: |
embryonic day 9.5 |
|
Note: |
Ubiquitous expression. |
Specimen Label: |
Table 3, +/+ |
Detected: |
true |
Specimen Num: |
5 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3655158 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-09-20 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1603915 |
Pattern: |
Not Specified |
Stage: |
TS15 |
Assay Id: |
MGI:3655159 |
Age: |
embryonic day 9.5 |
|
Note: |
Ubiquitous expression. Expression in this mutant is the same as in wild-type embryos. |
Specimen Label: |
Table 3, -/- |
Detected: |
true |
Specimen Num: |
6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kashiwayama Y |
Year: |
2009 |
Journal: |
Exp Cell Res |
Title: |
70-kDa peroxisomal membrane protein related protein (P70R/ABCD4) localizes to endoplasmic reticulum not peroxisomes, and NH2-terminal hydrophobic property determines the subcellular localization of ABC subfamily D proteins. |
Volume: |
315 |
Issue: |
2 |
Pages: |
190-205 |
|
•
•
•
•
•
|
Publication |
First Author: |
Sugihara T |
Year: |
2001 |
Journal: |
J Biol Chem |
Title: |
Pex19p dampens the p19ARF-p53-p21WAF1 tumor suppressor pathway. |
Volume: |
276 |
Issue: |
22 |
Pages: |
18649-52 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wu CC |
Year: |
2023 |
Journal: |
Int J Mol Sci |
Title: |
Reciprocal Regulation of Peroxisome Biogenesis and Myogenic Factors Is Critical for Myogenesis. |
Volume: |
24 |
Issue: |
15 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Murdoch JN |
Year: |
2001 |
Journal: |
Hum Mol Genet |
Title: |
Severe neural tube defects in the loop-tail mouse result from mutation of Lpp1, a novel gene involved in floor plate specification. |
Volume: |
10 |
Issue: |
22 |
Pages: |
2593-601 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kibar Z |
Year: |
2001 |
Journal: |
Nat Genet |
Title: |
Ltap, a mammalian homolog of Drosophila Strabismus/Van Gogh, is altered in the mouse neural tube mutant Loop-tail. |
Volume: |
28 |
Issue: |
3 |
Pages: |
251-5 |
|
•
•
•
•
•
|
Publication |
First Author: |
Doudney K |
Year: |
2001 |
Journal: |
Genomics |
Title: |
Comparative physical and transcript maps of approximately 1 Mb around loop-tail, a gene for severe neural tube defects on distal mouse chromosome 1 and human chromosome 1q22-q23. |
Volume: |
72 |
Issue: |
2 |
Pages: |
180-92 |
|
•
•
•
•
•
|
Publication |
First Author: |
Eddleston J |
Year: |
1999 |
Journal: |
Genomics |
Title: |
Physical and transcriptional map of a 3-Mb region of mouse chromosome 1 containing the gene for the neural tube defect mutant loop-tail (Lp). |
Volume: |
56 |
Issue: |
2 |
Pages: |
149-59 |
|
•
•
•
•
•
|
Publication |
First Author: |
Cobellis G |
Year: |
2005 |
Journal: |
Nucleic Acids Res |
Title: |
Tagging genes with cassette-exchange sites. |
Volume: |
33 |
Issue: |
4 |
Pages: |
e44 |
|
•
•
•
•
•
|
Publication |
First Author: |
MGI and IMPC |
Year: |
2018 |
Journal: |
Database Release |
Title: |
MGI Load of Endonuclease-Mediated Alleles (CRISPR) from the International Mouse Phenotyping Consortium (IMPC) |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Stryke D |
Year: |
2003 |
Journal: |
Nucleic Acids Res |
Title: |
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. |
Volume: |
31 |
Issue: |
1 |
Pages: |
278-81 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC) |
Year: |
2014 |
Journal: |
Database Release |
Title: |
Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2014 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-rat orthologs |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Magdaleno S |
Year: |
2006 |
Journal: |
PLoS Biol |
Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
Volume: |
4 |
Issue: |
4 |
Pages: |
e86 |
|
•
•
•
•
•
|
Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kawai J |
Year: |
2001 |
Journal: |
Nature |
Title: |
Functional annotation of a full-length mouse cDNA collection. |
Volume: |
409 |
Issue: |
6821 |
Pages: |
685-90 |
|
•
•
•
•
•
|
Publication |
First Author: |
Adams DJ |
Year: |
2024 |
Journal: |
Nature |
Title: |
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Protein Domain |
Type: |
Homologous_superfamily |
Description: |
Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis inanimals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts.PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. Pex19 is involved in membrane assembly and maintenance and functions as a receptor and chaperone of peroxisomal membrane proteins (PMPs) [].This superfamily represents the C-terminal domain of Pex19, which is assembled in a three-helical bundle and represents the mPTS (PMP-targeting signal) binding site []. |
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