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Search results 1 to 95 out of 95 for Phaf1

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Categories

Hits by Strain

Hits by Category

Type Details Score
Gene
80262 | PHAF1
Type: gene
Organism: human
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Gene
454152 | PHAF1
Type: gene
Organism: chimpanzee
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Gene
100125939 | PHAF1
Type: gene
Organism: cattle
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Gene
415699 | PHAF1
Type: gene
Organism: chicken
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Gene
557406 | phaf1
Type: gene
Organism: zebrafish
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Gene
695885 | PHAF1
Type: gene
Organism: macaque, rhesus
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Gene
100494115 | phaf1
Type: gene
Organism: frog, western clawed
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Gene
207123 | Phaf1
Type: gene
Organism: rat
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Gene
612982 | PHAF1
Type: gene
Organism: dog, domestic
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Protein Domain
IPR005373 | PHAF1
Type: Family
Description: PHAF1 and BCAS3 form a complex that affects the recruitment of several core autophagy proteins to the phagophore assembly site [].
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Protein Coding Gene
MGI:2443049 | Phaf1
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein
Q922R1
Organism: Mus musculus/domesticus
Length: 422  
Fragment?: false
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Protein
D3YYD8
Organism: Mus musculus/domesticus
Length: 117  
Fragment?: true
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Protein
D6RCI5
Organism: Mus musculus/domesticus
Length: 165  
Fragment?: false
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Protein
D6RI91
Organism: Mus musculus/domesticus
Length: 121  
Fragment?: false
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Protein
Q3TKL5
Organism: Mus musculus/domesticus
Length: 233  
Fragment?: false
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Publication
33499712 | -
   
First Author: Kojima W
Year: 2021
Journal: Autophagy
Title: Mammalian BCAS3 and C16orf70 associate with the phagophore assembly site in response to selective and non-selective autophagy.
Pages: 1-26
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Protein Coding Gene
MGP_CAROLIEiJ_G0031465 | -
Type: protein_coding_gene
Organism: Mus caroli
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Protein Coding Gene
MGP_129S1SvImJ_G0034029 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AJ_G0034010 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AKRJ_G0033936 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_BALBcJ_G0034003 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C3HHeJ_G0033715 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGI_C57BL6J_2443049 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C57BL6NJ_G0034523 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CASTEiJ_G0033041 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CBAJ_G0033688 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_DBA2J_G0033843 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_FVBNJ_G0033789 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_LPJ_G0033934 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NODShiLtJ_G0033832 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NZOHlLtJ_G0034541 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PWKPhJ_G0032742 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_WSBEiJ_G0033157 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PahariEiJ_G0023065 | -
Type: protein_coding_gene
Organism: Mus pahari
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Protein Coding Gene
MGP_SPRETEiJ_G0032583 | -
Type: protein_coding_gene
Organism: Mus spretus
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GXD Expression
GXD Expression
     
Probe: MGI:3528655
Assay Type: RT-PCR
Annotation Date: 2005-03-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684628
Stage: TS28
Assay Id: MGI:3528657
Age: postnatal
Specimen Label: liver
Detected: true
Specimen Num: 1
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GXD Expression
GXD Expression
     
Probe: MGI:3528655
Assay Type: RT-PCR
Annotation Date: 2005-03-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1876728
Stage: TS28
Assay Id: MGI:3528657
Age: postnatal
Specimen Label: spleen
Detected: true
Specimen Num: 2
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GXD Expression
GXD Expression
     
Probe: MGI:3528655
Assay Type: RT-PCR
Annotation Date: 2005-03-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1672828
Stage: TS28
Assay Id: MGI:3528657
Age: postnatal
Specimen Label: lung
Detected: true
Specimen Num: 3
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GXD Expression
GXD Expression
     
Probe: MGI:3528655
Assay Type: RT-PCR
Annotation Date: 2005-03-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1737328
Stage: TS28
Assay Id: MGI:3528657
Age: postnatal
Specimen Label: kidney
Detected: true
Specimen Num: 4
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GXD Expression
GXD Expression
     
Probe: MGI:3528655
Assay Type: RT-PCR
Annotation Date: 2005-03-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1738328
Stage: TS28
Assay Id: MGI:3528657
Age: postnatal
Specimen Label: gonad
Detected: true
Specimen Num: 5
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GXD Expression
GXD Expression
     
Probe: MGI:3528655
Assay Type: RT-PCR
Annotation Date: 2005-03-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689428
Stage: TS28
Assay Id: MGI:3528657
Age: postnatal
Specimen Label: brain
Detected: true
Specimen Num: 6
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GXD Expression
GXD Expression
     
Probe: MGI:3528655
Assay Type: RT-PCR
Annotation Date: 2005-03-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:3557728
Stage: TS28
Assay Id: MGI:3528657
Age: postnatal
Specimen Label: muscle
Detected: true
Specimen Num: 7
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GXD Expression
GXD Expression
     
Probe: MGI:3528655
Assay Type: RT-PCR
Annotation Date: 2005-03-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1842628
Stage: TS28
Assay Id: MGI:3528657
Age: postnatal week 3
Specimen Label: 3wk adr
Detected: true
Specimen Num: 8
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GXD Expression
GXD Expression
     
Probe: MGI:3528655
Assay Type: RT-PCR
Annotation Date: 2005-03-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1842628
Stage: TS28
Assay Id: MGI:3528657
Age: postnatal adult
Specimen Label: adult adr
Detected: true
Specimen Num: 9
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GXD Expression
GXD Expression
     
Probe: MGI:3528655
Assay Type: RT-PCR
Annotation Date: 2005-03-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1842627
Stage: TS27
Assay Id: MGI:3528657
Age: postnatal newborn
Specimen Label: P1 adr
Detected: true
Specimen Num: 10
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Publication
36864049 | J:335702
First Author: Leduc-Gaudet JP
Year: 2023
Journal: Nat Commun
Title: MYTHO is a novel regulator of skeletal muscle autophagy and integrity.
Volume: 14
Issue: 1
Pages: 1199
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Publication
15537664 | J:95686
First Author: Keegan CE
Year: 2005
Journal: Hum Mol Genet
Title: Urogenital and caudal dysgenesis in adrenocortical dysplasia (acd) mice is caused by a splicing mutation in a novel telomeric regulator.
Volume: 14
Issue: 1
Pages: 113-23
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Publication
15741177 | J:126097
First Author: Cobellis G
Year: 2005
Journal: Nucleic Acids Res
Title: Tagging genes with cassette-exchange sites.
Volume: 33
Issue: 4
Pages: e44
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Publication
- | J:77000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: MGC Data curation in Mouse Genome Informatics
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Publication
12904583 | J:85162
First Author: Hansen J
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome.
Volume: 100
Issue: 17
Pages: 9918-22
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Publication
17967808 | J:152068
First Author: Friedel RH
Year: 2007
Journal: Brief Funct Genomic Proteomic
Title: EUCOMM--the European conditional mouse mutagenesis program.
Volume: 6
Issue: 3
Pages: 180-5
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Publication
12520002 | J:91812
First Author: Stryke D
Year: 2003
Journal: Nucleic Acids Res
Title: BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.
Volume: 31
Issue: 1
Pages: 278-81
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Publication
- | J:155845
     
First Author: Wellcome Trust Sanger Institute
Year: 2010
Journal: MGI Direct Data Submission
Title: Alleles produced for the EUCOMM and EUCOMMTools projects by the Wellcome Trust Sanger Institute
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Publication
18799693 | J:142754
First Author: Hansen GM
Year: 2008
Journal: Genome Res
Title: Large-scale gene trapping in C57BL/6N mouse embryonic stem cells.
Volume: 18
Issue: 10
Pages: 1670-9
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Publication
- | J:155856
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Title: Rat to Mouse ISO GO annotation transfer
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Publication
- | J:85000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Title: MGI Sequence Curation Reference
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Publication
- | J:78475
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Chromosome assignment of mouse genes using the Mouse Genome Sequencing Consortium (MGSC) assembly and the ENSEMBL Database
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Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
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Publication
- | J:23000
       
First Author: MGD Nomenclature Committee
Year: 1995
Title: Nomenclature Committee Use
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Publication
14610273 | J:86696
First Author: Zambrowicz BP
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
Volume: 100
Issue: 24
Pages: 14109-14
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Publication
- | J:141210
     
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
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Publication
21677750 | J:173534
First Author: Skarnes WC
Year: 2011
Journal: Nature
Title: A conditional knockout resource for the genome-wide study of mouse gene function.
Volume: 474
Issue: 7351
Pages: 337-42
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Publication
- | J:342587
       
First Author: AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators
Year: 2011
Title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
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Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
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Publication
- | J:164563
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Title: Human to Mouse ISO GO annotation transfer
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Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
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Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Protein Domain
IPR022175 | BCAS3
Type: Domain
Description: This domain is found towards the C-terminal of BCAS3 and ATG18-like proteins from plants. In BCAS3, this domain seems to be important for PHAF1 interactions [].This entry includes BCAS3 from animals and AT18F/G/H from Arabidopsis. BCAS3 is a microtubule associated cell migration factor that has been linked to the development of breast cancer and angiogenesis []. It forms a complex with PHAF1 and associates with the preautophagosomal structure during both non-selective and selective autophagy [].AT18F/G/H are linked to autophagy [].
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Publication
17505058 | -
First Author: Gururaj AE
Year: 2007
Journal: Mol Endocrinol
Title: Estrogen induces expression of BCAS3, a novel estrogen receptor-alpha coactivator, through proline-, glutamic acid-, and leucine-rich protein-1 (PELP1).
Volume: 21
Issue: 8
Pages: 1847-60
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Protein
B1AR76
Organism: Mus musculus/domesticus
Length: 458  
Fragment?: true
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Protein
F7CPM1
Organism: Mus musculus/domesticus
Length: 477  
Fragment?: true
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Publication
15860012 | -
First Author: Xiong Y
Year: 2005
Journal: Plant J
Title: AtATG18a is required for the formation of autophagosomes during nutrient stress and senescence in Arabidopsis thaliana.
Volume: 42
Issue: 4
Pages: 535-46
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Protein
B1B0B3
Organism: Mus musculus/domesticus
Length: 120  
Fragment?: true
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Protein
Q5SWI1
Organism: Mus musculus/domesticus
Length: 165  
Fragment?: true
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Protein Domain
IPR039156 | PHAF1/BROMI
Type: Family
Description: This entry includes protein broad-minded, which interacts with cell cycle-related kinase (CCRK) and together these proteins regulate ciliary membrane and axonemal growth []; and phagosome assembly factor 1 (PHAF1) and its homologues. PHAF1 and BCAS3 form a complex that affects the recruitment of several core autophagy proteins to the phagophore assembly site [].
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Protein Domain
IPR045142 | BCAS3-like
Type: Family
Description: This entry includes BCAS3 from animals and AT18F/G/H from Arabidopsis. BCAS3 is a microtubule associated cell migration factor that has been linked to the development of breast cancer and angiogenesis []. It forms a complex with PHAF1 and associates with the preautophagosomal structure during both non-selective and selective autophagy [].AT18F/G/H are linked to autophagy [].
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Publication
20159594 | J:158583
First Author: Ko HW
Year: 2010
Journal: Dev Cell
Title: Broad-minded links cell cycle-related kinase to cilia assembly and hedgehog signal transduction.
Volume: 18
Issue: 2
Pages: 237-47
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Protein
Q8CCN5
Organism: Mus musculus/domesticus
Length: 928  
Fragment?: false
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Protein
Q3TAC0
Organism: Mus musculus/domesticus
Length: 803  
Fragment?: true
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Protein
Q0VF62
Organism: Mus musculus/domesticus
Length: 913  
Fragment?: false
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Protein
F7C0F2
Organism: Mus musculus/domesticus
Length: 693  
Fragment?: true
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Protein
B1AR74
Organism: Mus musculus/domesticus
Length: 943  
Fragment?: false
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Protein
Q3URV1
Organism: Mus musculus/domesticus
Length: 1296  
Fragment?: false
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MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

Copyright © 2017 by The Jackson Laboratory. All Rights Reserved

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