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Search results 1 to 84 out of 84 for Rpf1

0.017s

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Hits by Pathway

Hits by Category

Hits by Strain

Type Details Score
Gene
80135 | RPF1
Type: gene
Organism: human
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Gene
100328984 | rpf1
Type: gene
Organism: frog, western clawed
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Gene
499725 | Rpf1
Type: gene
Organism: rat
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Gene
479972 | RPF1
Type: gene
Organism: dog, domestic
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Gene
469370 | RPF1
Type: gene
Organism: chimpanzee
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Gene
513081 | RPF1
Type: gene
Organism: cattle
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Gene
424539 | RPF1
Type: gene
Organism: chicken
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Gene
415250 | rpf1
Type: gene
Organism: zebrafish
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Gene
710286 | RPF1
Type: gene
Organism: macaque, rhesus
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Protein Coding Gene
MGI:1917535 | Rpf1
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CAROLIEiJ_G0025726 | -
Type: protein_coding_gene
Organism: Mus caroli
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Protein Coding Gene
MGP_129S1SvImJ_G0027974 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AJ_G0027933 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AKRJ_G0027899 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_BALBcJ_G0027945 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C3HHeJ_G0027675 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGI_C57BL6J_1917535 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C57BL6NJ_G0028388 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CASTEiJ_G0027128 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CBAJ_G0027650 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_DBA2J_G0027790 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_FVBNJ_G0027757 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_LPJ_G0027901 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NODShiLtJ_G0027790 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NZOHlLtJ_G0028447 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PWKPhJ_G0026851 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_WSBEiJ_G0027208 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PahariEiJ_G0027177 | -
Type: protein_coding_gene
Organism: Mus pahari
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Protein Coding Gene
MGP_SPRETEiJ_G0026679 | -
Type: protein_coding_gene
Organism: Mus spretus
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GXD Expression
GXD Expression
 
Probe: MGI:3262737
Assay Type: RNA in situ
Annotation Date: 2010-09-14
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1603923
Pattern: Ubiquitous
Stage: TS23
Assay Id: MGI:4827795
Age: embryonic day 14.5
Image: euxassay_007029_10
Specimen Label: euxassay_007029_10
Detected: true
Specimen Num: 1
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Publication
25446528 | J:218172
First Author: Ha T
Year: 2015
Journal: Dev Biol
Title: CbGRiTS: cerebellar gene regulation in time and space.
Volume: 397
Issue: 1
Pages: 18-30
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Publication
- | J:265051
     
First Author: MGI and IMPC
Year: 2018
Journal: Database Release
Title: MGI Load of Endonuclease-Mediated Alleles (CRISPR) from the International Mouse Phenotyping Consortium (IMPC)
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Publication
- | J:157065
     
First Author: Helmholtz Zentrum Muenchen GmbH
Year: 2010
Journal: MGI Direct Data Submission
Title: Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu)
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Publication
- | J:72247
       
First Author: DDB, FB, MGI, GOA, ZFIN curators
Year: 2001
Title: Gene Ontology annotation through association of InterPro records with GO terms
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Publication
- | J:85000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Title: MGI Sequence Curation Reference
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Publication
- | J:78475
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Chromosome assignment of mouse genes using the Mouse Genome Sequencing Consortium (MGSC) assembly and the ENSEMBL Database
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Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
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Publication
11217851 | J:65060
First Author: Kawai J
Year: 2001
Journal: Nature
Title: Functional annotation of a full-length mouse cDNA collection.
Volume: 409
Issue: 6821
Pages: 685-90
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Publication
- | J:23000
       
First Author: MGD Nomenclature Committee
Year: 1995
Title: Nomenclature Committee Use
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Publication
- | J:141210
     
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
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Publication
- | J:342587
       
First Author: AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators
Year: 2011
Title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
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Publication
- | J:60000
       
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
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Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
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Publication
- | J:164563
       
First Author: The Gene Ontology Consortium
Year: 2010
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
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Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
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Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
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Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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Protein
Q7TND5
Organism: Mus musculus/domesticus
Length: 349  
Fragment?: false
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Publication
15480574 | -
First Author: Hartmann M
Year: 2004
Journal: Arch Microbiol
Title: The glycosylated cell surface protein Rpf2, containing a resuscitation-promoting factor motif, is involved in intercellular communication of Corynebacterium glutamicum.
Volume: 182
Issue: 4
Pages: 299-312
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Protein Domain
IPR044905 | Rpf1_C_sf
Type: Homologous_superfamily
Description: This entry represents the C-terminal domain of Resuscitation-promoting factor Rpf1 from Corynebacterium glutamicum, a factor that stimulates resuscitation or dormant cells []. The function of this domain is not known.
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Protein Domain
IPR021630 | Rpf1_C
Type: Domain
Description: This entry represents the C-terminal domain of Resuscitation-promoting factor Rpf1 from Corynebacterium glutamicum, a factor that stimulates resuscitation or dormant cells []. The function of this domain is not known.
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Publication
12655004 | J:82786
First Author: Granneman S
Year: 2003
Journal: Nucleic Acids Res
Title: The human Imp3 and Imp4 proteins form a ternary complex with hMpp10, which only interacts with the U3 snoRNA in 60-80S ribonucleoprotein complexes.
Volume: 31
Issue: 7
Pages: 1877-87
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Protein
D6RCI8
Organism: Mus musculus/domesticus
Length: 97  
Fragment?: false
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Publication
11864606 | J:74748
First Author: Wehner KA
Year: 2002
Journal: Mol Cell
Title: The sigma(70)-like motif: a eukaryotic RNA binding domain unique to a superfamily of proteins required for ribosome biogenesis.
Volume: 9
Issue: 2
Pages: 329-39
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Protein Domain
IPR044281 | IMP4/RPF1
Type: Family
Description: This family represents the U3 small nucleolar ribonucleoprotein protein IMP4 and Ribosome production factor 1 RPF1 that belong to the IMP4 superfamily. This superfamily contains a Brix (biogenesis of ribosomes in Xenopus) domain, a region of 150-180 residues length, and it is characterised by the sigma70-like motif, a sequence motif first identified in the sigma70 family of prokaryotic transcription factors, which is sufficient to confer RNA binding activity [, , ]. IMP4 is a component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP) and it is required for the early cleavages during pre-18S ribosomal RNA processing [, ]. RPF1 is a essential protein involved in ribosome biogenesis [].
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Protein
Q8VHZ7
Organism: Mus musculus/domesticus
Length: 291  
Fragment?: false
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Protein
F6VY64
Organism: Mus musculus/domesticus
Length: 171  
Fragment?: true
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Protein
A0A0G2JEG7
Organism: Mus musculus/domesticus
Length: 147  
Fragment?: true
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Protein
A0A0G2JFR7
Organism: Mus musculus/domesticus
Length: 212  
Fragment?: false
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Publication
15489263 | -
First Author: Gérczei T
Year: 2004
Journal: Proc Natl Acad Sci U S A
Title: Imp3p and Imp4p mediate formation of essential U3-precursor rRNA (pre-rRNA) duplexes, possibly to recruit the small subunit processome to the pre-rRNA.
Volume: 101
Issue: 43
Pages: 15301-6
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Publication
12702244 | -
First Author: Bogengruber E
Year: 2003
Journal: FEMS Yeast Res
Title: Functional analysis in yeast of the Brix protein superfamily involved in the biogenesis of ribosomes.
Volume: 3
Issue: 1
Pages: 35-43
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Protein
Q9DCA5
Organism: Mus musculus/domesticus
Length: 353  
Fragment?: false
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Protein
Q9JJ80
Organism: Mus musculus/domesticus
Length: 306  
Fragment?: false
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Protein
S4R2H5
Organism: Mus musculus/domesticus
Length: 205  
Fragment?: true
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Protein
S4R2R2
Organism: Mus musculus/domesticus
Length: 153  
Fragment?: true
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Protein
G3X926
Organism: Mus musculus/domesticus
Length: 273  
Fragment?: false
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Protein
E9Q2V8
Organism: Mus musculus/domesticus
Length: 154  
Fragment?: true
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Protein
S4R1Y5
Organism: Mus musculus/domesticus
Length: 257  
Fragment?: true
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Protein Domain
IPR007109 | Brix
Type: Domain
Description: Analysis of the Brix (biogenesis of ribosomes in Xenopus) protein leaded to the identification of a region of 150-180 residues length, called the Brixdomain, which is found in six protein families: one archaean family (I) including hypothetical proteins (one per genome); and five eukaryote families, each named according to a representative member and including close homologues of this prototype: (II) Peter Pan (D. melanogaster) and SSF1/2 (S.cerevisiae); (III) RPF1 (S. cerevisiae); (IV) IMP4 (S. cerevisiae); (V) Brix (X.laevis) and BRX1 (S. cerevisiae); and (VI) RPF2 (S.cerevisiae).Typically, a protein sequence belonging to the Brix domain superfamily contains a highly charged N-terminal segment (about 50 residues) followed by a single copy of the Brix domain and another highly charged C-terminal region (about 100 residues). The archaean sequences have two unique characteristics: (1) the charged regions are totally absent at the N terminus and are reduced in number to about 10 residues at the C terminus; and (2) the C-terminal part of the Brix domain itself is minimal. Two eukaryote groups have large insertions within the C-terminal region: about 70 residues in the group III and about 120 in the group II. Biological data for some proteins in this family suggest a role in ribosome biogenesis and rRNA binding [, , , ].
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Protein
Q91YU8
Organism: Mus musculus/domesticus
Length: 470  
Fragment?: false
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Protein
A0A1L1SRW3
Organism: Mus musculus/domesticus
Length: 193  
Fragment?: false
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Publication
11406393 | -
First Author: Eisenhaber F
Year: 2001
Journal: Trends Biochem Sci
Title: The Brix domain protein family -- a key to the ribosomal biogenesis pathway?
Volume: 26
Issue: 6
Pages: 345-7
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Publication
11246005 | -
First Author: Mayer C
Year: 2001
Journal: Trends Biochem Sci
Title: The archaeal homolog of the Imp4 protein, a eukaryotic U3 snoRNP component.
Volume: 26
Issue: 3
Pages: 143-4
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