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Search results 1 to 82 out of 82 for Rpf1

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Hits by Pathway

Hits by Strain

Hits by Category

Type Details Score
Gene
80135 | RPF1
Type: gene
Organism: human
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Gene
513081 | RPF1
Type: gene
Organism: cattle
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Gene
424539 | RPF1
Type: gene
Organism: chicken
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Gene
415250 | rpf1
Type: gene
Organism: zebrafish
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Gene
710286 | RPF1
Type: gene
Organism: macaque, rhesus
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Gene
100328984 | rpf1
Type: gene
Organism: frog, western clawed
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Gene
499725 | Rpf1
Type: gene
Organism: rat
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Gene
479972 | RPF1
Type: gene
Organism: dog, domestic
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Gene
469370 | RPF1
Type: gene
Organism: chimpanzee
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Protein Coding Gene
MGI:1917535 | Rpf1
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CAROLIEiJ_G0025726 | -
Type: protein_coding_gene
Organism: Mus caroli
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Protein Coding Gene
MGP_129S1SvImJ_G0027974 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AJ_G0027933 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AKRJ_G0027899 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_BALBcJ_G0027945 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C3HHeJ_G0027675 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGI_C57BL6J_1917535 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C57BL6NJ_G0028388 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CASTEiJ_G0027128 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CBAJ_G0027650 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_DBA2J_G0027790 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_FVBNJ_G0027757 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_LPJ_G0027901 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NODShiLtJ_G0027790 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NZOHlLtJ_G0028447 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PWKPhJ_G0026851 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_WSBEiJ_G0027208 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PahariEiJ_G0027177 | -
Type: protein_coding_gene
Organism: Mus pahari
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Protein Coding Gene
MGP_SPRETEiJ_G0026679 | -
Type: protein_coding_gene
Organism: Mus spretus
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GXD Expression
GXD Expression
 
Probe: MGI:3262737
Assay Type: RNA in situ
Annotation Date: 2010-09-14
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1603923
Pattern: Ubiquitous
Stage: TS23
Assay Id: MGI:4827795
Age: embryonic day 14.5
Image: euxassay_007029_10
Specimen Label: euxassay_007029_10
Detected: true
Specimen Num: 1
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Publication
25446528 | J:218172
First Author: Ha T
Year: 2015
Journal: Dev Biol
Title: CbGRiTS: cerebellar gene regulation in time and space.
Volume: 397
Issue: 1
Pages: 18-30
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Publication
- | J:157065
     
First Author: Helmholtz Zentrum Muenchen GmbH
Year: 2010
Journal: MGI Direct Data Submission
Title: Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu)
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Publication
- | J:72247
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2001
Title: Gene Ontology Annotation by the MGI Curatorial Staff
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Publication
- | J:85000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Title: MGI Sequence Curation Reference
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Publication
- | J:78475
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Chromosome assignment of mouse genes using the Mouse Genome Sequencing Consortium (MGSC) assembly and the ENSEMBL Database
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Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
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Publication
11217851 | J:65060
First Author: Kawai J
Year: 2001
Journal: Nature
Title: Functional annotation of a full-length mouse cDNA collection.
Volume: 409
Issue: 6821
Pages: 685-90
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Publication
- | J:23000
       
First Author: MGD Nomenclature Committee
Year: 1995
Title: Nomenclature Committee Use
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Publication
- | J:141210
     
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
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Publication
- | J:342587
       
First Author: AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators
Year: 2011
Title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
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Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
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Publication
- | J:164563
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Title: Human to Mouse ISO GO annotation transfer
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Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
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Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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Protein
Q7TND5
Organism: Mus musculus/domesticus
Length: 349  
Fragment?: false
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Publication
15480574 | -
First Author: Hartmann M
Year: 2004
Journal: Arch Microbiol
Title: The glycosylated cell surface protein Rpf2, containing a resuscitation-promoting factor motif, is involved in intercellular communication of Corynebacterium glutamicum.
Volume: 182
Issue: 4
Pages: 299-312
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Protein Domain
IPR044905 | Rpf1_C_sf
Type: Homologous_superfamily
Description: This entry represents the C-terminal domain of Resuscitation-promoting factor Rpf1 from Corynebacterium glutamicum, a factor that stimulates resuscitation or dormant cells []. The function of this domain is not known.
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Protein Domain
IPR021630 | Rpf1_C
Type: Domain
Description: This entry represents the C-terminal domain of Resuscitation-promoting factor Rpf1 from Corynebacterium glutamicum, a factor that stimulates resuscitation or dormant cells []. The function of this domain is not known.
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Publication
12655004 | J:82786
First Author: Granneman S
Year: 2003
Journal: Nucleic Acids Res
Title: The human Imp3 and Imp4 proteins form a ternary complex with hMpp10, which only interacts with the U3 snoRNA in 60-80S ribonucleoprotein complexes.
Volume: 31
Issue: 7
Pages: 1877-87
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Protein
D6RCI8
Organism: Mus musculus/domesticus
Length: 97  
Fragment?: false
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Publication
11864606 | J:74748
First Author: Wehner KA
Year: 2002
Journal: Mol Cell
Title: The sigma(70)-like motif: a eukaryotic RNA binding domain unique to a superfamily of proteins required for ribosome biogenesis.
Volume: 9
Issue: 2
Pages: 329-39
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Protein Domain
IPR044281 | IMP4/RPF1
Type: Family
Description: This family represents the U3 small nucleolar ribonucleoprotein protein IMP4 and Ribosome production factor 1 RPF1 that belong to the IMP4 superfamily. This superfamily contains a Brix (biogenesis of ribosomes in Xenopus) domain, a region of 150-180 residues length, and it is characterised by the sigma70-like motif, a sequence motif first identified in the sigma70 family of prokaryotic transcription factors, which is sufficient to confer RNA binding activity [, , ]. IMP4 is a component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP) and it is required for the early cleavages during pre-18S ribosomal RNA processing [, ]. RPF1 is a essential protein involved in ribosome biogenesis [].
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Protein
Q8VHZ7
Organism: Mus musculus/domesticus
Length: 291  
Fragment?: false
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Protein
F6VY64
Organism: Mus musculus/domesticus
Length: 171  
Fragment?: true
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Protein
A0A0G2JEG7
Organism: Mus musculus/domesticus
Length: 147  
Fragment?: true
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Protein
A0A0G2JFR7
Organism: Mus musculus/domesticus
Length: 212  
Fragment?: false
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Publication
15489263 | -
First Author: Gérczei T
Year: 2004
Journal: Proc Natl Acad Sci U S A
Title: Imp3p and Imp4p mediate formation of essential U3-precursor rRNA (pre-rRNA) duplexes, possibly to recruit the small subunit processome to the pre-rRNA.
Volume: 101
Issue: 43
Pages: 15301-6
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Publication
12702244 | -
First Author: Bogengruber E
Year: 2003
Journal: FEMS Yeast Res
Title: Functional analysis in yeast of the Brix protein superfamily involved in the biogenesis of ribosomes.
Volume: 3
Issue: 1
Pages: 35-43
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Protein
Q9DCA5
Organism: Mus musculus/domesticus
Length: 353  
Fragment?: false
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Protein
Q9JJ80
Organism: Mus musculus/domesticus
Length: 306  
Fragment?: false
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Protein
S4R2H5
Organism: Mus musculus/domesticus
Length: 205  
Fragment?: true
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Protein
S4R2R2
Organism: Mus musculus/domesticus
Length: 153  
Fragment?: true
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Protein
G3X926
Organism: Mus musculus/domesticus
Length: 273  
Fragment?: false
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Protein
E9Q2V8
Organism: Mus musculus/domesticus
Length: 154  
Fragment?: true
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Protein
S4R1Y5
Organism: Mus musculus/domesticus
Length: 257  
Fragment?: true
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Protein Domain
IPR007109 | Brix
Type: Domain
Description: Analysis of the Brix (biogenesis of ribosomes in Xenopus) protein leaded to the identification of a region of 150-180 residues length, called the Brixdomain, which is found in six protein families: one archaean family (I) including hypothetical proteins (one per genome); and five eukaryote families, each named according to a representative member and including close homologues of this prototype: (II) Peter Pan (D. melanogaster) and SSF1/2 (S.cerevisiae); (III) RPF1 (S. cerevisiae); (IV) IMP4 (S. cerevisiae); (V) Brix (X.laevis) and BRX1 (S. cerevisiae); and (VI) RPF2 (S.cerevisiae).Typically, a protein sequence belonging to the Brix domain superfamily contains a highly charged N-terminal segment (about 50 residues) followed by a single copy of the Brix domain and another highly charged C-terminal region (about 100 residues). The archaean sequences have two unique characteristics: (1) the charged regions are totally absent at the N terminus and are reduced in number to about 10 residues at the C terminus; and (2) the C-terminal part of the Brix domain itself is minimal. Two eukaryote groups have large insertions within the C-terminal region: about 70 residues in the group III and about 120 in the group II. Biological data for some proteins in this family suggest a role in ribosome biogenesis and rRNA binding [, , , ].
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Protein
Q91YU8
Organism: Mus musculus/domesticus
Length: 470  
Fragment?: false
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Protein
A0A1L1SRW3
Organism: Mus musculus/domesticus
Length: 193  
Fragment?: false
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Publication
11406393 | -
First Author: Eisenhaber F
Year: 2001
Journal: Trends Biochem Sci
Title: The Brix domain protein family -- a key to the ribosomal biogenesis pathway?
Volume: 26
Issue: 6
Pages: 345-7
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Publication
11246005 | -
First Author: Mayer C
Year: 2001
Journal: Trends Biochem Sci
Title: The archaeal homolog of the Imp4 protein, a eukaryotic U3 snoRNP component.
Volume: 26
Issue: 3
Pages: 143-4
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MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

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