Type |
Details |
Score |
Gene |
Type: |
gene |
Organism: |
human |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
frog, western clawed |
|
•
•
•
•
•
|
Gene |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
dog, domestic |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
cattle |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
chimpanzee |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
chicken |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
zebrafish |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
macaque, rhesus |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:1005999 |
Assay Type: |
RNA in situ |
Annotation Date: |
2009-01-15 |
Strength: |
Weak |
Sex: |
Not Specified |
Emaps: |
EMAPS:3564522 |
Pattern: |
Not Specified |
Stage: |
TS22 |
Assay Id: |
MGI:3826057 |
Age: |
embryonic day 14.5 |
Image: |
Additional file 4 Rps3 |
|
Specimen Label: |
Additional file 4 Rps3 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kim SH |
Year: |
2005 |
Journal: |
Biochem Biophys Res Commun |
Title: |
Characterization of a wide range base-damage-endonuclease activity of mammalian rpS3. |
Volume: |
328 |
Issue: |
4 |
Pages: |
962-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hegde V |
Year: |
2009 |
Journal: |
Mutat Res |
Title: |
DNA repair efficiency in transgenic mice over expressing ribosomal protein S3. |
Volume: |
666 |
Issue: |
1-2 |
Pages: |
16-22 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wan F |
Year: |
2007 |
Journal: |
Cell |
Title: |
Ribosomal protein S3: a KH domain subunit in NF-kappaB complexes that mediates selective gene regulation. |
Volume: |
131 |
Issue: |
5 |
Pages: |
927-39 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lyamouri M |
Year: |
2002 |
Journal: |
Gene |
Title: |
Organization, sequence, and phylogenetic analysis of the ribosomal protein S3 gene from Drosophila virilis. |
Volume: |
294 |
Issue: |
1-2 |
Pages: |
147-56 |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
Mus caroli |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
Mus pahari |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
Mus spretus |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6506568 |
Assay Type: |
RNA in situ |
Annotation Date: |
2021-02-17 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1737323 |
Pattern: |
Regionally restricted |
Stage: |
TS23 |
Assay Id: |
MGI:6506782 |
Age: |
embryonic day 15.5 |
|
Note: |
All detected expression is outside the ureteric bud. |
Specimen Label: |
2 - Category 3 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6506568 |
Assay Type: |
RNA in situ |
Annotation Date: |
2021-02-17 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:2840723 |
|
Stage: |
TS23 |
Assay Id: |
MGI:6506782 |
Age: |
embryonic day 15.5 |
|
Note: |
No expression is seen in the ureteric bud. |
Specimen Label: |
2 - Category 3 |
Detected: |
false |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7718862 |
Assay Type: |
RNA in situ |
Annotation Date: |
2024-09-23 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691022 |
Pattern: |
Not Specified |
Stage: |
TS22 |
Assay Id: |
MGI:7719036 |
Age: |
embryonic day 14.5 |
Image: |
S13I |
Note: |
Expression was not enriched in the dorsal telencephalon or are inconclusive, compared with other regions. |
Specimen Label: |
S13I |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6506568 |
Assay Type: |
RNA in situ |
Annotation Date: |
2021-02-17 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:2760524 |
|
Stage: |
TS24 |
Assay Id: |
MGI:6506782 |
Age: |
embryonic day 16.5 |
|
|
Specimen Label: |
not shown |
Detected: |
false |
Specimen Num: |
2 |
|
•
•
•
•
•
|
Publication |
First Author: |
Harper M |
Year: |
1994 |
Journal: |
GenBank Submission |
Title: |
M. musculus mRNA for ribosomal protein S3 |
|
|
Pages: |
X76772 |
|
•
•
•
•
•
|
Publication |
First Author: |
Li Y |
Year: |
2020 |
Journal: |
Sci Rep |
Title: |
Latexin deficiency in mice up-regulates inflammation and aggravates colitis through HECTD1/Rps3/NF-κB pathway. |
Volume: |
10 |
Issue: |
1 |
Pages: |
9868 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wier EM |
Year: |
2015 |
Journal: |
FEBS Lett |
Title: |
Caspase-3 cleaved p65 fragment dampens NF-κB-mediated anti-apoptotic transcription by interfering with the p65/RPS3 interaction. |
Volume: |
589 |
Issue: |
23 |
Pages: |
3581-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hara Y |
Year: |
2009 |
Journal: |
Nucleic Acids Res |
Title: |
Molecular characterization of Mybbp1a as a co-repressor on the Period2 promoter. |
Volume: |
37 |
Issue: |
4 |
Pages: |
1115-26 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kimball SR |
Year: |
2003 |
Journal: |
Am J Physiol Cell Physiol |
Title: |
Mammalian stress granules represent sites of accumulation of stalled translation initiation complexes. |
Volume: |
284 |
Issue: |
2 |
Pages: |
C273-84 |
|
•
•
•
•
•
|
Publication |
First Author: |
Boon AC |
Year: |
2009 |
Journal: |
J Virol |
Title: |
Host genetic variation affects resistance to infection with a highly pathogenic H5N1 influenza A virus in mice. |
Volume: |
83 |
Issue: |
20 |
Pages: |
10417-26 |
|
•
•
•
•
•
|
Publication |
First Author: |
Collins MO |
Year: |
2006 |
Journal: |
J Neurochem |
Title: |
Molecular characterization and comparison of the components and multiprotein complexes in the postsynaptic proteome. |
Volume: |
97 Suppl 1 |
|
Pages: |
16-23 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chu CC |
Year: |
1998 |
Journal: |
Mol Immunol |
Title: |
Expressed genes in interleukin-4 treated B cells identified by cDNA representational difference analysis. |
Volume: |
35 |
Issue: |
8 |
Pages: |
487-502 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chern T |
Year: |
2022 |
Journal: |
Nat Commun |
Title: |
Mutations in Hcfc1 and Ronin result in an inborn error of cobalamin metabolism and ribosomopathy. |
Volume: |
13 |
Issue: |
1 |
Pages: |
134 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hupe M |
Year: |
2014 |
Journal: |
Nucleic Acids Res |
Title: |
Evaluation of TRAP-sequencing technology with a versatile conditional mouse model. |
Volume: |
42 |
Issue: |
2 |
Pages: |
e14 |
|
•
•
•
•
•
|
Publication |
First Author: |
Li H |
Year: |
2022 |
Journal: |
Nature |
Title: |
A male germ-cell-specific ribosome controls male fertility. |
Volume: |
612 |
Issue: |
7941 |
Pages: |
725-731 |
|
•
•
•
•
•
|
Publication |
First Author: |
Khatter H |
Year: |
2015 |
Journal: |
Nature |
Title: |
Structure of the human 80S ribosome. |
Volume: |
520 |
Issue: |
7549 |
Pages: |
640-5 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kondrashov N |
Year: |
2011 |
Journal: |
Cell |
Title: |
Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning. |
Volume: |
145 |
Issue: |
3 |
Pages: |
383-397 |
|
•
•
•
•
•
|
Publication |
First Author: |
Rutledge EA |
Year: |
2017 |
Journal: |
Development |
Title: |
Cellular heterogeneity in the ureteric progenitor niche and distinct profiles of branching morphogenesis in organ development. |
Volume: |
144 |
Issue: |
17 |
Pages: |
3177-3188 |
|
•
•
•
•
•
|
Publication |
First Author: |
Liu X |
Year: |
2016 |
Journal: |
BMC Immunol |
Title: |
Decreased expression levels of Ifi genes is associated to the increased resistance to spontaneous arthritis disease in mice deficiency of IL-1RA. |
Volume: |
17 |
Issue: |
1 |
Pages: |
25 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hoffman BG |
Year: |
2008 |
Journal: |
Genome Biol |
Title: |
Identification of transcripts with enriched expression in the developing and adult pancreas. |
Volume: |
9 |
Issue: |
6 |
Pages: |
R99 |
|
•
•
•
•
•
|
Publication |
First Author: |
The Jackson Laboratory Backcross DNA Panel Mapping Resource |
Year: |
1999 |
Journal: |
Database Release |
Title: |
JAX BSS Panel Mapping Data |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GO Central curators, GOA curators, Rhea curators |
Year: |
2020 |
|
Title: |
Automatic Gene Ontology annotation based on Rhea mapping |
|
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|
|
•
•
•
•
•
|
Publication |
First Author: |
Ko MS |
Year: |
2000 |
Journal: |
Development |
Title: |
Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. |
Volume: |
127 |
Issue: |
8 |
Pages: |
1737-49 |
|
•
•
•
•
•
|
Publication |
First Author: |
GOA curators, MGI curators |
Year: |
2001 |
|
Title: |
Gene Ontology annotation based on Enzyme Commission mapping |
|
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|
|
•
•
•
•
•
|
Publication |
First Author: |
Stryke D |
Year: |
2003 |
Journal: |
Nucleic Acids Res |
Title: |
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. |
Volume: |
31 |
Issue: |
1 |
Pages: |
278-81 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wellcome Trust Sanger Institute |
Year: |
2010 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the EUCOMM and EUCOMMTools projects by the Wellcome Trust Sanger Institute |
|
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|
|
•
•
•
•
•
|
Publication |
First Author: |
Hansen GM |
Year: |
2008 |
Journal: |
Genome Res |
Title: |
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. |
Volume: |
18 |
Issue: |
10 |
Pages: |
1670-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2014 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-rat orthologs |
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•
•
•
•
•
|
Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt |
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•
•
•
•
•
|
Publication |
First Author: |
Magdaleno S |
Year: |
2006 |
Journal: |
PLoS Biol |
Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
Volume: |
4 |
Issue: |
4 |
Pages: |
e86 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2003 |
|
Title: |
MGI Sequence Curation Reference |
|
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•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Chromosome assignment of mouse genes using the Mouse Genome Sequencing Consortium (MGSC) assembly and the ENSEMBL Database |
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•
•
•
•
•
|
Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kawai J |
Year: |
2001 |
Journal: |
Nature |
Title: |
Functional annotation of a full-length mouse cDNA collection. |
Volume: |
409 |
Issue: |
6821 |
Pages: |
685-90 |
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•
•
•
•
•
|
Publication |
First Author: |
Zambrowicz BP |
Year: |
2003 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. |
Volume: |
100 |
Issue: |
24 |
Pages: |
14109-14 |
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•
•
•
•
•
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Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
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Title: |
GemPharmatech Website. |
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•
•
•
•
•
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Publication |
First Author: |
Skarnes WC |
Year: |
2011 |
Journal: |
Nature |
Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
Volume: |
474 |
Issue: |
7351 |
Pages: |
337-42 |
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•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI) |
Year: |
2008 |
Journal: |
Database Download |
Title: |
Mouse Gene Trap Data Load from dbGSS |
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•
•
•
•
•
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Publication |
First Author: |
AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators |
Year: |
2011 |
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Title: |
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity |
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•
•
•
•
•
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Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
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Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping |
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•
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Publication |
First Author: |
Okazaki Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
563-73 |
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•
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Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
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Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
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Publication |
First Author: |
MGI Genome Annotation Group and UniGene Staff |
Year: |
2015 |
Journal: |
Database Download |
Title: |
MGI-UniGene Interconnection Effort |
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Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
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Title: |
Annotation inferences using phylogenetic trees |
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•
•
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•
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Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
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•
•
•
•
•
|
Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
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•
•
•
•
•
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Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
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•
•
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•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
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Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
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Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
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•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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Protein Domain |
Type: |
Domain |
Description: |
This domain is found at the N terminus of HBS1 proteins. It interacts with the ribosomal protein rpS3 at the mRNA entry site []. |
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Protein Domain |
Type: |
Homologous_superfamily |
Description: |
This domain is found at the N terminus of HBS1 proteins. It interacts with the ribosomal protein rpS3 at the mRNA entry site []. |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
612
 |
Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
104
 |
Fragment?: |
true |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
140
 |
Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
612
 |
Fragment?: |
false |
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Publication |
First Author: |
Becker T |
Year: |
2011 |
Journal: |
Nat Struct Mol Biol |
Title: |
Structure of the no-go mRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome. |
Volume: |
18 |
Issue: |
6 |
Pages: |
715-20 |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
682
 |
Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
679
 |
Fragment?: |
false |
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•
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
679
 |
Fragment?: |
false |
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