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Search results 1 to 87 out of 87 for Scarf1

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Categories

Hits by Category

Hits by Strain

Type Details Score
Gene
8578 | SCARF1
Type: gene
Organism: human
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Gene
100497590 | scarf1
Type: gene
Organism: frog, western clawed
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Gene
303313 | Scarf1
Type: gene
Organism: rat
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Gene
491194 | SCARF1
Type: gene
Organism: dog, domestic
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Gene
747264 | SCARF1
Type: gene
Organism: chimpanzee
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Gene
616566 | SCARF1
Type: gene
Organism: cattle
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Gene
771559 | SCARF1
Type: gene
Organism: chicken
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Gene
100005273 | scarf1
Type: gene
Organism: zebrafish
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Gene
721235 | SCARF1
Type: gene
Organism: macaque, rhesus
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Protein Domain
IPR033329 | SCARF1
Type: Family
Description: The class F scavenger receptor 1 (SCARF1/SREC-I) contains epidermal growth factor (EGF)-like repeats in its extracellular domain, followed by a long C-terminal cytoplasmic tail composed of serine and proline-rich regions. SCARF1 is an endocytic receptor for acetylated low density lipoprotein, HSP70, HSP90, calreticulin, gp96, and GP2 [, , , , ]. Dendritic cells (DCs),macrophages and endothelial cells use SCARF1 to recognize and engulf apoptotic cells via the complement component C1q; this mediates apoptotic cells clearance, antigen clearance and prevents autoimmunity [].
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Protein Coding Gene
MGI:2449455 | Scarf1
Type: protein_coding_gene
Organism: mouse, laboratory
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Publication
23892722 | J:208237
First Author: Ramirez-Ortiz ZG
Year: 2013
Journal: Nat Immunol
Title: The scavenger receptor SCARF1 mediates the clearance of apoptotic cells and prevents autoimmunity.
Volume: 14
Issue: 9
Pages: 917-26
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Publication
20686127 | J:163244
First Author: Murshid A
Year: 2010
Journal: J Immunol
Title: Heat shock protein 90 mediates efficient antigen cross presentation through the scavenger receptor expressed by endothelial cells-I.
Volume: 185
Issue: 5
Pages: 2903-17
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Publication
15145948 | J:91911
First Author: Tamura Y
Year: 2004
Journal: J Biol Chem
Title: Scavenger receptor expressed by endothelial cells I (SREC-I) mediates the uptake of acetylated low density lipoproteins by macrophages stimulated with lipopolysaccharide.
Volume: 279
Issue: 30
Pages: 30938-44
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Protein
Q68EF1
Organism: Mus musculus/domesticus
Length: 474  
Fragment?: false
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Publication
19237602 | J:146780
First Author: Means TK
Year: 2009
Journal: J Exp Med
Title: Evolutionarily conserved recognition and innate immunity to fungal pathogens by the scavenger receptors SCARF1 and CD36.
Volume: 206
Issue: 3
Pages: 637-53
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Publication
21190681 | -
First Author: Hölzl MA
Year: 2011
Journal: Cell Immunol
Title: The zymogen granule protein 2 (GP2) binds to scavenger receptor expressed on endothelial cells I (SREC-I).
Volume: 267
Issue: 2
Pages: 88-93
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Publication
15371419 | -
First Author: Berwin B
Year: 2004
Journal: J Biol Chem
Title: SREC-I, a type F scavenger receptor, is an endocytic receptor for calreticulin.
Volume: 279
Issue: 49
Pages: 51250-7
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Publication
25155057 | -
First Author: Murshid A
Year: 2014
Journal: Immunobiology
Title: Hsp90-peptide complexes stimulate antigen presentation through the class II pathway after binding scavenger receptor SREC-I.
Volume: 219
Issue: 12
Pages: 924-31
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Protein
Q5ND28
Organism: Mus musculus/domesticus
Length: 820  
Fragment?: false
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Protein
B7ZC28
Organism: Mus musculus/domesticus
Length: 478  
Fragment?: false
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Publication
12154095 | J:79485
First Author: Ishii J
Year: 2002
Journal: J Biol Chem
Title: SREC-II, a new member of the scavenger receptor type F family, trans-interacts with SREC-I through its extracellular domain.
Volume: 277
Issue: 42
Pages: 39696-702
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Protein Coding Gene
MGP_CAROLIEiJ_G0016742 | -
Type: protein_coding_gene
Organism: Mus caroli
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Protein Coding Gene
MGP_129S1SvImJ_G0018716 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AJ_G0018682 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AKRJ_G0018652 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_BALBcJ_G0018656 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C3HHeJ_G0018469 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGI_C57BL6J_2449455 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C57BL6NJ_G0019107 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CASTEiJ_G0018023 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CBAJ_G0018439 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_DBA2J_G0018548 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_FVBNJ_G0018538 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_LPJ_G0018619 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NODShiLtJ_G0018564 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NZOHlLtJ_G0019147 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PWKPhJ_G0017794 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_WSBEiJ_G0018076 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PahariEiJ_G0017879 | -
Type: protein_coding_gene
Organism: Mus pahari
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Protein Coding Gene
MGP_SPRETEiJ_G0017585 | -
Type: protein_coding_gene
Organism: Mus spretus
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GXD Expression
GXD Expression
   
Probe: MGI:3513329
Assay Type: Western blot
Annotation Date: 2005-01-07
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689428
Stage: TS28
Assay Id: MGI:3513338
Age: postnatal adult
Image: 5
Specimen Label: Brain
Detected: true
Specimen Num: 1
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GXD Expression
GXD Expression
   
Probe: MGI:3513329
Assay Type: Western blot
Annotation Date: 2005-01-07
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689426
Stage: TS26
Assay Id: MGI:3513338
Age: embryonic day 18.0
Image: 5
Specimen Label: Brain
Detected: true
Specimen Num: 2
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GXD Expression
GXD Expression
   
Probe: MGI:3513329
Assay Type: Western blot
Annotation Date: 2005-01-07
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1757728
Stage: TS28
Assay Id: MGI:3513338
Age: postnatal adult
Image: 5
Specimen Label: Spinal cord
Detected: true
Specimen Num: 3
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GXD Expression
GXD Expression
   
Probe: MGI:3513329
Assay Type: Western blot
Annotation Date: 2005-01-07
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1757726
Stage: TS26
Assay Id: MGI:3513338
Age: embryonic day 18.0
Image: 5
Specimen Label: Spinal cord
Detected: true
Specimen Num: 4
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GXD Expression
GXD Expression
   
Probe: MGI:3513329
Assay Type: Western blot
Annotation Date: 2005-01-07
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1666828
Stage: TS28
Assay Id: MGI:3513338
Age: postnatal adult
Image: 5
Specimen Label: DRG
Detected: true
Specimen Num: 5
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GXD Expression
GXD Expression
   
Probe: MGI:3513329
Assay Type: Western blot
Annotation Date: 2005-01-07
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1666826
Stage: TS26
Assay Id: MGI:3513338
Age: embryonic day 18.0
Image: 5
Specimen Label: DRG
Detected: true
Specimen Num: 6
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GXD Expression
GXD Expression
   
Probe: MGI:6780101
Assay Type: RT-PCR
Annotation Date: 2021-10-19
Strength: Present
Sex: Not Specified
Emaps: EMAPS:360464
Stage: TS04
Assay Id: MGI:6780122
Age: embryonic day 3.5
Image: 6
Specimen Label: Bl
Detected: true
Specimen Num: 1
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GXD Expression
GXD Expression
   
Probe: MGI:6780101
Assay Type: RT-PCR
Annotation Date: 2021-10-19
Strength: Present
Sex: Not Specified
Emaps: EMAPS:2576528
Stage: TS28
Assay Id: MGI:6780122
Age: postnatal adult
Image: 6
Specimen Label: PC
Detected: true
Specimen Num: 2
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Publication
15247299 | J:93349
First Author: Shibata M
Year: 2004
Journal: J Biol Chem
Title: Type F scavenger receptor SREC-I interacts with advillin, a member of the gelsolin/villin family, and induces neurite-like outgrowth.
Volume: 279
Issue: 38
Pages: 40084-90
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Publication
17586471 | J:123036
First Author: Ishii J
Year: 2007
Journal: Biochem Biophys Res Commun
Title: Scavenger receptor expressed by endothelial cells (SREC)-I interacts with protein phosphatase 1alpha in L cells to induce neurite-like outgrowth.
Volume: 360
Issue: 1
Pages: 269-74
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Publication
18160648 | J:130971
First Author: Hasegawa H
Year: 2007
Journal: J Neurosci
Title: Analyzing somatosensory axon projections with the sensory neuron-specific Advillin gene.
Volume: 27
Issue: 52
Pages: 14404-14
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Publication
33927296 | J:306186
First Author: Pisko J
Year: 2021
Journal: Sci Rep
Title: Apoptotic cells in mouse blastocysts are eliminated by neighbouring blastomeres.
Volume: 11
Issue: 1
Pages: 9228
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Publication
- | J:81858
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Title: Data Curation Using Mouse Genome Assembly
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Publication
- | J:346132
       
First Author: The Gene Ontology Consortium
Year: 2016
Title: Automatic assignment of GO terms using logical inference, based on on inter-ontology links
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Publication
- | J:57656
     
First Author: Lennon G
Year: 1999
Journal: Database Download
Title: WashU-HHMI Mouse EST Project
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Publication
- | J:157065
     
First Author: Helmholtz Zentrum Muenchen GmbH
Year: 2010
Journal: MGI Direct Data Submission
Title: Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu)
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Publication
- | J:85000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Title: MGI Sequence Curation Reference
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Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
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Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
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Publication
- | J:326541
       
First Author: Cyagen Biosciences Inc.
Year: 2022
Title: Cyagen Biosciences Website.
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Publication
- | J:60000
       
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
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Publication
- | J:342605
       
First Author: GOA curators
Year: 2016
Title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
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Publication
- | J:68900
     
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
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Publication
- | J:164563
       
First Author: The Gene Ontology Consortium
Year: 2010
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
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Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
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Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:57747
     
First Author: MGI Genome Annotation Group and UniGene Staff
Year: 2015
Journal: Database Download
Title: MGI-UniGene Interconnection Effort
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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Protein Domain
IPR042635 | SREC1/2
Type: Family
Description: The class F scavenger receptors (SCARFs or SRECs) have two isoforms, SCARF1/SREC-I and SCARF2/SREC-II. Similar to SREC-I, SREC-II contains multiple epidermal growth factor-like repeats in its extracellular domain. However, in contrast to SREC-I, SREC-II had little activity to internalize modified low density lipoproteins (LDL). SREC-II and SREC-I display strong heterophilic trans-interaction through the extracellular domains []. They are expressed in a specific temporal and spatial pattern during epidermal development [].Mutations in the SCARF2 gene cause Van den Ende-Gupta syndrome (VDEGS), a syndrome characterised by craniofacial and skeletal abnormalities []. The class F scavenger receptor 1 (SCARF1/SREC-I) contains epidermal growth factor (EGF)-like repeats in its extracellular domain, followed by a long C-terminal cytoplasmic tail composed of serine and proline-rich regions. SCARF1 is an endocytic receptor for acetylated low density lipoprotein, HSP70, HSP90, calreticulin, gp96, and GP2 [, , , , ]. Dendritic cells (DCs), macrophages and endothelial cells use SCARF1 to recognize and engulf apoptotic cells via the complement component C1q; this mediates apoptotic cells clearance, antigen clearance and prevents autoimmunity [].
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Protein
A0A338P7B0
Organism: Mus musculus/domesticus
Length: 141  
Fragment?: true
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Publication
15922673 | J:99529
First Author: Hwang M
Year: 2005
Journal: Gene Expr Patterns
Title: The temporal and spatial expression of the novel Ca++-binding proteins, Scarf and Scarf2, during development and epidermal differentiation.
Volume: 5
Issue: 6
Pages: 801-8
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Publication
20887961 | -
First Author: Anastasio N
Year: 2010
Journal: Am J Hum Genet
Title: Mutations in SCARF2 are responsible for Van Den Ende-Gupta syndrome.
Volume: 87
Issue: 4
Pages: 553-9
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Protein
P59222
Organism: Mus musculus/domesticus
Length: 833  
Fragment?: false
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Protein
A0A338P7B2
Organism: Mus musculus/domesticus
Length: 566  
Fragment?: false
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Protein
Q58A84
Organism: Mus musculus/domesticus
Length: 833  
Fragment?: false
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Publication
15489334 | -
First Author: Gerhard DS
Year: 2004
Journal: Genome Res
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
Volume: 14
Issue: 10B
Pages: 2121-7
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MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

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