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Search results 1 to 100 out of 116 for Shd

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Hits by Category

Type Details Score
Gene
56961 | SHD
Type: gene
Organism: human
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Gene
518715 | SHD
Type: gene
Organism: cattle
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Gene
100685846 | SHD
Type: gene
Organism: dog, domestic
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Gene
714753 | SHD
Type: gene
Organism: macaque, rhesus
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Gene
100124932 | shd
Type: gene
Organism: frog, western clawed
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Gene
107055336 | SHD
Type: gene
Organism: chicken
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Gene
316507 | Shd
Type: gene
Organism: rat
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Gene
455601 | SHD
Type: gene
Organism: chimpanzee
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Protein Domain
IPR035039 | SHD
Type: Family
Description: SHD (SH2 domain-containing adapter protein D) is thought to act as an adapter protein in the central nervous system. SHD contains five YXXP motifs, a substrate sequence preferred by Abl tyrosine kinases, in addition to a proline-rich region and a C-terminal SH2 domain [].
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Protein Coding Gene
MGI:1099461 | Shd
Type: protein_coding_gene
Organism: mouse, laboratory
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Publication
9315092 | J:43082
First Author: Oda T
Year: 1997
Journal: Oncogene
Title: Identification and characterization of two novel SH2 domain-containing proteins from a yeast two hybrid screen with the ABL tyrosine kinase.
Volume: 15
Issue: 11
Pages: 1255-62
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Protein
A0A286YE05
Organism: Mus musculus/domesticus
Length: 124  
Fragment?: false
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Protein
O88834
Organism: Mus musculus/domesticus
Length: 343  
Fragment?: false
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Protein Coding Gene
MGP_CAROLIEiJ_G0021756 | -
Type: protein_coding_gene
Organism: Mus caroli
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Protein Coding Gene
MGP_129S1SvImJ_G0023904 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AJ_G0023864 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AKRJ_G0023833 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_BALBcJ_G0023865 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C3HHeJ_G0023628 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGI_C57BL6J_1099461 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C57BL6NJ_G0024309 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CASTEiJ_G0023111 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CBAJ_G0023605 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_DBA2J_G0023733 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_FVBNJ_G0023699 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_LPJ_G0023813 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NODShiLtJ_G0023726 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NZOHlLtJ_G0024354 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PWKPhJ_G0022856 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_WSBEiJ_G0023175 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PahariEiJ_G0020745 | -
Type: protein_coding_gene
Organism: Mus pahari
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Protein Coding Gene
MGP_SPRETEiJ_G0022668 | -
Type: protein_coding_gene
Organism: Mus spretus
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Publication
31422919 | J:284123
First Author: Ritter N
Year: 2019
Journal: Dev Cell
Title: The lncRNA Locus Handsdown Regulates Cardiac Gene Programs and Is Essential for Early Mouse Development.
Volume: 50
Issue: 5
Pages: 644-657.e8
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Publication
35013307 | J:317822
First Author: Chern T
Year: 2022
Journal: Nat Commun
Title: Mutations in Hcfc1 and Ronin result in an inborn error of cobalamin metabolism and ribosomopathy.
Volume: 13
Issue: 1
Pages: 134
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Publication
- | J:73796
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Function or Process or Component Unknown following Literature Review
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Publication
- | J:57656
     
First Author: Lennon G
Year: 1999
Journal: Database Download
Title: WashU-HHMI Mouse EST Project
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Publication
- | J:157065
     
First Author: Helmholtz Zentrum Muenchen GmbH
Year: 2010
Journal: MGI Direct Data Submission
Title: Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu)
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Publication
16602821 | J:162220
First Author: Magdaleno S
Year: 2006
Journal: PLoS Biol
Title: BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system.
Volume: 4
Issue: 4
Pages: e86
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Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
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Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
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Publication
- | J:68900
     
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
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Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
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Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:57747
     
First Author: MGI Genome Annotation Group and UniGene Staff
Year: 2015
Journal: Database Download
Title: MGI-UniGene Interconnection Effort
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Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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Author
Haddock SHD
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Publication
28785521 | -
 
First Author: Francis WR
Year: 2017
Journal: PeerJ
Title: Symplectin evolved from multiple duplications in bioluminescent squid.
Volume: 5
Pages: e3633
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Publication
11773082 | J:75312
First Author: Kuroda TS
Year: 2002
Journal: J Biol Chem
Title: The Slp homology domain of synaptotagmin-like proteins 1-4 and Slac2 functions as a novel Rab27A binding domain.
Volume: 277
Issue: 11
Pages: 9212-8
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Publication
12051743 | J:169802
First Author: Kuroda TS
Year: 2002
Journal: Biochem Biophys Res Commun
Title: Synaptotagmin-like protein 5: a novel Rab27A effector with C-terminal tandem C2 domains.
Volume: 293
Issue: 3
Pages: 899-906
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Protein Domain
IPR035046 | SHD_SH2
Type: Domain
Description: This entry represents the SH2 domain of SHD.SHD (SH2 domain-containing adapter protein D) is thought to act as an adapter protein in the central nervous system. SHD contains five YXXP motifs, a substrate sequence preferred by Abl tyrosine kinases, in addition to a proline-rich region and a C-terminal SH2 domain [].
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Protein Domain
IPR012320 | SHD_dom
Type: Domain
Description: Human stonins, like their Drosophila homologue stoned B, are supposed to beendocytotic proteins involved in clathrin-mediated endocytosis at synapses.The two human stonins, as well as their Drosophila melanogaster (Fruit fly) and Caenorhabditis elegans homologues, exhibit a modular structure consisting ofan N-terminal proline- and serine-rich domain, a central stonin homologydomain (SHD), and a C-terminal domain homologous to the signal-binding domainof the mu subunits of adaptor protein (AP) complexes (mu-homology domain). The ~140 amino-acid SHD domain has not been described in other proteins and may thus be unique to members of the stonin family. Its function is not yet known [, ].
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Publication
24184645 | -
 
First Author: Lyakhova TA
Year: 2014
Journal: Chem Phys Lipids
Title: The C2 domains of granuphilin are high-affinity sensors for plasma membrane lipids.
Volume: 182
Pages: 29-37
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Protein Domain
IPR043567 | SYTL1-5_C2B
Type: Domain
Description: Synaptotagmin-like proteins (Slps) contain a N-terminal RabBD (Rab-binding) domain and two C-terminal C2 domains, C2A and C2B []. The characteristic feature of the Slp family is the N-terminal domain (referred to as SHD for Slp Homology Domain), which is not found in other C-type tandem C2 proteins []. SHD functions as a specific Rab27A/B-binding domain []. This entry represents the C2B domain. The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C and the protein kinase catalytic domain []. Regions with significant homology []to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding []and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported[], the domain forms an eight-stranded β-sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel β-sandwich.
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Protein Domain
IPR037303 | SLP-4/5_C2A
Type: Domain
Description: Synaptotagmin-like proteins (Slps) contain a N-terminal RabBD (Rab-binding) domain and two C-terminal C2 domains, C2A and C2B []. The characteristic feature of the Slp family is the N-terminal domain (referred to as SHD for Slp Homology Domain), which is not found in other C-type tandem C2 proteins []. SHD functions as a specific Rab27A/B-binding domain []. The C2B domain of Slp4 (also known as Granuphilin) interact with the plasma membrane lipid phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2][]. C2 domains fold into an 8-standed β-sandwich that can adopt 2 structural arrangements, type I and type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin andintersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions [, , , , , , , ].
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Publication
18266782 | J:150917
First Author: Holt O
Year: 2008
Journal: Traffic
Title: Slp1 and Slp2-a localize to the plasma membrane of CTL and contribute to secretion from the immunological synapse.
Volume: 9
Issue: 4
Pages: 446-57
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Publication
9139840 | J:66315
First Author: Moog-Lutz C
Year: 1997
Journal: Int J Cancer
Title: MLN64 exhibits homology with the steroidogenic acute regulatory protein (STAR) and is over-expressed in human breast carcinomas.
Volume: 71
Issue: 2
Pages: 183-91
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Publication
9166581 | J:40667
First Author: Grewal PK
Year: 1997
Journal: Mamm Genome
Title: The mouse homolog of FRG1, a candidate gene for FSHD, maps proximal to the myodystrophy mutation on chromosome 8.
Volume: 8
Issue: 6
Pages: 394-8
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Publication
14745138 | -
First Author: Izumi T
Year: 2003
Journal: Cell Struct Funct
Title: The roles of Rab27 and its effectors in the regulated secretory pathways.
Volume: 28
Issue: 5
Pages: 465-74
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Publication
12590134 | J:83162
First Author: Fukuda M
Year: 2003
Journal: J Biol Chem
Title: Slp4-a/granuphilin-a inhibits dense-core vesicle exocytosis through interaction with the GDP-bound form of Rab27A in PC12 cells.
Volume: 278
Issue: 17
Pages: 15390-6
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Publication
10497219 | J:57922
First Author: Wang J
Year: 1999
Journal: J Biol Chem
Title: Novel rabphilin-3-like protein associates with insulin-containing granules in pancreatic beta cells.
Volume: 274
Issue: 40
Pages: 28542-8
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Publication
16481396 | -
First Author: Tsuboi T
Year: 2006
Journal: Mol Biol Cell
Title: The Slp4-a linker domain controls exocytosis through interaction with Munc18-1.syntaxin-1a complex.
Volume: 17
Issue: 5
Pages: 2101-12
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Publication
18940604 | J:155184
First Author: Kukimoto-Niino M
Year: 2008
Journal: Structure
Title: Structural basis for the exclusive specificity of Slac2-a/melanophilin for the Rab27 GTPases.
Volume: 16
Issue: 10
Pages: 1478-90
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Publication
12062444 | -
First Author: Nagashima K
Year: 2002
Journal: FEBS Lett
Title: Melanophilin directly links Rab27a and myosin Va through its distinct coiled-coil regions.
Volume: 517
Issue: 1-3
Pages: 233-8
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Publication
28559319 | -
First Author: Oberhofer A
Year: 2017
Journal: Proc Natl Acad Sci U S A
Title: Myosin Va's adaptor protein melanophilin enforces track selection on the microtubule and actin networks in vitro.
Volume: 114
Issue: 24
Pages: E4714-E4723
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Protein Domain
IPR044134 | FYVE_Slp4
Type: Domain
Description: Synaptotagmin-like protein 4 (SYTL4, Slp4), also known as granuphilin or exophilin-2, belongs to the synaptotagmin-like protein family (Slp), which is a group of putative membrane trafficking proteins []. The characteristic feature of the Slp family is the N-terminal Slp homology domain (SHD), which functions as a Rab27-binding domain and C-terminal tandem C2 domains (known as the C2A domain and C2B domain), putative Ca2+-binding motifs [, ]. SHD consists of two conserved regions, designated SHD1 and SHD2, which may function as protein interaction sites. The SHD1 and SHD2 of Slp4 are separated by a putative FYVE zinc finger, which resembles a FYVE-related domain that is structurally similar to the canonical FYVE domains but lacks the three signature sequences: an N-terminal WxxD motif (x for any residue), the central basic R(R/K)HHCRxCG patch, and a C-terminal RVC motif.There are several alternatively spliced isoform of Slp4. Slp4-a (granuphilin-a) has two C2 domains, whereas Slp4-b (granuphilin-b) contains only the first C2 domain. Expression of Slp4-a inhibits regulated secretion in endocrine cells. Slp4-a binds to both the GTP- and GDP-bound forms of Rab27A and inhibits a specific GTP/GDP exchange cycle required for dense-core vesicle exocytosis []. Slp4 has been detected in the pancreatic islet, in particular in insulin-positive beta cells, and in pituitary []. This entry represents the FYVE-related domain of synaptotagmin-like protein 4.
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Protein Domain
IPR028694 | SYTL4
Type: Family
Description: Synaptotagmin-like protein 4 (SYTL4, Slp4), also known as granuphilin or exophilin-2, belongs to the synaptotagmin-like protein family (Slp), which is a group of putative membrane trafficking proteins []. The characteristic feature of the Slp family is the N-terminal Slp homology domain (SHD), which functions as a Rab27-binding domain and C-terminal tandem C2 domains (known as the C2A domain and C2B domain), putative Ca2+-binding motifs [, ]. SHD consists of two conserved regions, designated SHD1 and SHD2, which may function as protein interaction sites. The SHD1 and SHD2 of Slp4 are separated by a putative FYVE zinc finger, which resembles a FYVE-related domain that is structurally similar to the canonical FYVE domains but lacks the three signature sequences: an N-terminal WxxD motif (x for any residue), the central basic R(R/K)HHCRxCG patch, and a C-terminal RVC motif.There are several alternatively spliced isoform of Slp4. Slp4-a (granuphilin-a) has two C2 domains, whereas Slp4-b (granuphilin-b) contains only the first C2 domain. Expression of Slp4-a inhibits regulated secretion in endocrine cells. Slp4-a binds to both the GTP- and GDP-bound forms of Rab27A and inhibits a specific GTP/GDP exchange cycle required for dense-core vesicle exocytosis []. Slp4 has been detected inthe pancreatic islet, in particular in insulin-positive beta cells, and in pituitary [].
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Protein Domain
IPR037442 | Melanophilin_FYVE-rel_dom
Type: Domain
Description: Melanophilin, also termed SlaC2-a, or exophilin-3, is a GTP-bound form of Rab27A-, myosin Va-, and actin-binding protein present on melanosomes. It is involved in the control of transferring of melanosomes from microtubules to actin filaments. It also functions as a melanocyte type myosin Va (McM5) binding partner and directly activates the actin-activated ATPase activity of McM5 through forming a tripartite protein complex with Rab27A and an actin-based motor myosin Va [,]. SlaC2-a belongs to the Slp homologue lacking C2 domains (Slac2) family. It contains an N-terminal Slp homology domain (SHD), but lacks tandem C2 domains. The SHD consists of two conserved regions, designated SHD1 (Slp homology domain 1) and SHD2, which may function as protein interaction sites []. The SHD1 and SHD2 of SlaC2-a are separated by a putative FYVE zinc finger, which resembles a FYVE-related domain that is structurally similar to the canonical FYVE domains but lacks the three signature sequences: an N-terminal WxxD motif (x for any residue), the central basic R(R/K)HHCRxCG patch, and a C-terminal RVC motif. Moreover, Slac2-a has a middle myosin-binding domain and a C-terminal actin-binding domain [].
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Protein
Q9R0Q1
Organism: Mus musculus/domesticus
Length: 673  
Fragment?: false
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Protein
Q549X6
Organism: Mus musculus/domesticus
Length: 673  
Fragment?: false
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Protein
Q80T23
Organism: Mus musculus/domesticus
Length: 753  
Fragment?: false
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Protein
A2AF58
Organism: Mus musculus/domesticus
Length: 753  
Fragment?: false
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Publication
11381094 | -
First Author: Martina JA
Year: 2001
Journal: J Cell Biol
Title: Stonin 2: an adaptor-like protein that interacts with components of the endocytic machinery.
Volume: 153
Issue: 5
Pages: 1111-20
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Publication
14726597 | J:114143
First Author: Walther K
Year: 2004
Journal: Proc Natl Acad Sci U S A
Title: Functional dissection of the interactions of stonin 2 with the adaptor complex AP-2 and synaptotagmin.
Volume: 101
Issue: 4
Pages: 964-9
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Publication
7791877 | J:26068
First Author: Li C
Year: 1995
Journal: Nature
Title: Ca(2+)-dependent and -independent activities of neural and non-neural synaptotagmins.
Volume: 375
Issue: 6532
Pages: 594-9
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Protein
Q99N80
Organism: Mus musculus/domesticus
Length: 567  
Fragment?: false
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Protein
Q69ZF4
Organism: Mus musculus/domesticus
Length: 407  
Fragment?: true
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Protein
A0A5F8MPI7
Organism: Mus musculus/domesticus
Length: 1280  
Fragment?: false
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Protein
A2AE95
Organism: Mus musculus/domesticus
Length: 503  
Fragment?: false
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Protein
Q6KAP5
Organism: Mus musculus/domesticus
Length: 590  
Fragment?: true
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Protein
E9PUK9
Organism: Mus musculus/domesticus
Length: 402  
Fragment?: false
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Protein
A2AE94
Organism: Mus musculus/domesticus
Length: 568  
Fragment?: false
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Publication
8253763 | -
First Author: Davletov BA
Year: 1993
Journal: J Biol Chem
Title: A single C2 domain from synaptotagmin I is sufficient for high affinity Ca2+/phospholipid binding.
Volume: 268
Issue: 35
Pages: 26386-90
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Publication
22453964 | -
 
First Author: Farah CA
Year: 2012
Journal: Adv Exp Med Biol
Title: The role of C2 domains in PKC signaling.
Volume: 740
Pages: 663-83
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Protein
Q8BZ60
Organism: Mus musculus/domesticus
Length: 895  
Fragment?: false
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Protein
Q8CDJ8
Organism: Mus musculus/domesticus
Length: 730  
Fragment?: false
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•
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•
Protein
E9PXP7
Organism: Mus musculus/domesticus
Length: 898  
Fragment?: false
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Protein
Q3UW71
Organism: Mus musculus/domesticus
Length: 746  
Fragment?: false
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Publication
7697723 | -
First Author: Sutton RB
Year: 1995
Journal: Cell
Title: Structure of the first C2 domain of synaptotagmin I: a novel Ca2+/phospholipid-binding fold.
Volume: 80
Issue: 6
Pages: 929-38
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Protein
Q99N50
Organism: Mus musculus/domesticus
Length: 950  
Fragment?: false
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