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  • Search this entire website. Enter identifiers, names or keywords for genes, diseases, strains, ontology terms, etc. (e.g. Pax6, Parkinson, ataxia)
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Search results 1 to 87 out of 87 for Sri

0.037s

Categories

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Hits by Strain

Hits by Category

Type Details Score
Gene
6717 | SRI
Type: gene
Organism: human
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Gene
683667 | Sri
Type: gene
Organism: rat
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Gene
463518 | SRI
Type: gene
Organism: chimpanzee
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Gene
508319 | SRI
Type: gene
Organism: cattle
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Gene
420538 | SRI
Type: gene
Organism: chicken
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Gene
393344 | sri
Type: gene
Organism: zebrafish
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Gene
705215 | SRI
Type: gene
Organism: macaque, rhesus
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Gene
549421 | sri
Type: gene
Organism: frog, western clawed
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Gene
475220 | SRI
Type: gene
Organism: dog, domestic
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Protein Domain
IPR013257 | SRI
Type: Domain
Description: The SRI (Set2 Rpb1 interacting) domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation []. This domain is conserved from yeast to humans. Members of this family form a compact, closed three-helix bundle, with an up-down-up topology. The first and second helices are antiparallel to each other and are of similar length; the third helix, which is packed across helices alpha1 and alpha2 is slightly shorter, consisting of only 15 amino acids. Most conserved hydrophobic residues are largely buried in the interior of the structure and form an extensive and contiguous hydrophobic core that stabilises the packing of the three-helix bundle. This domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation [, ].
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Protein Coding Gene
MGI:98419 | Sri
Type: protein_coding_gene
Organism: mouse, laboratory
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Gene
102723885 | SRI-AS1
Type: gene
Organism: human
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Publication
16286474 | -
First Author: Vojnic E
Year: 2006
Journal: J Biol Chem
Title: Structure and carboxyl-terminal domain (CTD) binding of the Set2 SRI domain that couples histone H3 Lys36 methylation to transcription.
Volume: 281
Issue: 1
Pages: 13-5
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Publication
30795807 | J:285103
First Author: Sri S
Year: 2019
Journal: Acta Neuropathol Commun
Title: Emergence of synaptic and cognitive impairment in a mature-onset APP mouse model of Alzheimer's disease.
Volume: 7
Issue: 1
Pages: 25
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Publication
16314571 | -
First Author: Li M
Year: 2005
Journal: Proc Natl Acad Sci U S A
Title: Solution structure of the Set2-Rpb1 interacting domain of human Set2 and its interaction with the hyperphosphorylated C-terminal domain of Rpb1.
Volume: 102
Issue: 49
Pages: 17636-41
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Protein
A0A0G2JEZ4
Organism: Mus musculus/domesticus
Length: 760  
Fragment?: true
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Publication
15798214 | -
First Author: Kizer KO
Year: 2005
Journal: Mol Cell Biol
Title: A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation.
Volume: 25
Issue: 8
Pages: 3305-16
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Protein
E9Q5F9
Organism: Mus musculus/domesticus
Length: 2537  
Fragment?: false
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Publication
2111175 | J:43625
First Author: Sri Widada J
Year: 1990
Journal: Biochimie
Title: Identification of the calmodulin binding domain of alpha-fodrin and implications for folding.
Volume: 72
Issue: 1
Pages: 19-24
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Publication
2926814 | J:43398
First Author: Sri Widada J
Year: 1989
Journal: J Mol Biol
Title: Cloning and deletion mutagenesis using direct protein-protein interaction on an expression vector. Identification of the calmodulin binding domain of alpha-fodrin.
Volume: 205
Issue: 2
Pages: 455-8
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Protein Coding Gene
MGP_CAROLIEiJ_G0026954 | -
Type: protein_coding_gene
Organism: Mus caroli
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Protein Coding Gene
MGP_129S1SvImJ_G0029280 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AJ_G0029244 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AKRJ_G0029193 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_BALBcJ_G0029261 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C3HHeJ_G0028981 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGI_C57BL6J_98419 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C57BL6NJ_G0029711 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CASTEiJ_G0028394 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CBAJ_G0028942 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_DBA2J_G0029096 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_FVBNJ_G0029056 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_LPJ_G0029185 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NODShiLtJ_G0029083 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NZOHlLtJ_G0029742 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PWKPhJ_G0028116 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_WSBEiJ_G0028474 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PahariEiJ_G0021727 | -
Type: protein_coding_gene
Organism: Mus pahari
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Protein Coding Gene
MGP_SPRETEiJ_G0027949 | -
Type: protein_coding_gene
Organism: Mus spretus
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Publication
26822088 | J:246708
First Author: Marmugi A
Year: 2016
Journal: Diabetes
Title: Sorcin Links Pancreatic β-Cell Lipotoxicity to ER Ca2+ Stores.
Volume: 65
Issue: 4
Pages: 1009-21
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Publication
12754254 | J:133729
First Author: Meyers MB
Year: 2003
Journal: J Biol Chem
Title: Sorcin regulates excitation-contraction coupling in the heart.
Volume: 278
Issue: 31
Pages: 28865-71
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Publication
17130302 | J:129757
First Author: Collis LP
Year: 2007
Journal: FASEB J
Title: Expression of a sorcin missense mutation in the heart modulates excitation-contraction coupling.
Volume: 21
Issue: 2
Pages: 475-87
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Publication
29174767 | J:257038
 
First Author: Chen X
Year: 2018
Journal: J Mol Cell Cardiol
Title: Sorcin ablation plus β-adrenergic stimulation generate an arrhythmogenic substrate in mouse ventricular myocytes.
Volume: 114
Pages: 199-210
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Publication
12925238 | J:91188
 
First Author: Herr C
Year: 2003
Journal: BMC Biochem
Title: Function, expression and localization of annexin A7 in platelets and red blood cells: insights derived from an annexin A7 mutant mouse.
Volume: 4
Pages: 8
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Publication
14644162 | J:86832
First Author: Clemen CS
Year: 2003
Journal: Exp Cell Res
Title: The lack of annexin A7 affects functions of primary astrocytes.
Volume: 291
Issue: 2
Pages: 406-14
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Publication
22338092 | J:196242
First Author: Noordeen NA
Year: 2012
Journal: Diabetes
Title: Glucose-induced nuclear shuttling of ChREBP is mediated by sorcin and Ca(2+) ions in pancreatic β-cells.
Volume: 61
Issue: 3
Pages: 574-85
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Publication
8543148 | J:29962
First Author: Il'inskaia GV
Year: 1995
Journal: Genetika
Title: [Relationship between amplicon composition and cytologic type of structures containing amplified DNA in murine P388 cells with multiple drug resistance].
Volume: 31
Issue: 10
Pages: 1449-51
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Publication
16204356 | J:104643
First Author: Takeda T
Year: 2005
Journal: FASEB J
Title: Presenilin 2 regulates the systolic function of heart by modulating Ca2+ signaling.
Volume: 19
Issue: 14
Pages: 2069-71
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Publication
22326846 | J:183806
First Author: Ali R
Year: 2012
Journal: J Mol Cell Cardiol
Title: miR-1 mediated suppression of Sorcin regulates myocardial contractility through modulation of Ca2+ signaling.
Volume: 52
Issue: 5
Pages: 1027-37
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Publication
22928916 | J:192932
First Author: Nakada T
Year: 2012
Journal: Biochem J
Title: The proximal C-terminus of α(1C) subunits is necessary for junctional membrane targeting of cardiac L-type calcium channels.
Volume: 448
Issue: 2
Pages: 221-31
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Publication
1627461 | J:1525
First Author: Goffinet AM
Year: 1992
Journal: Int J Dev Biol
Title: The reeler gene: a clue to brain development and evolution.
Volume: 36
Issue: 1
Pages: 101-7
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Publication
1783386 | J:2349
First Author: Dernoncourt C
Year: 1991
Journal: Genomics
Title: Estimation of genetic distances between "reeler" and nearby loci on mouse chromosome 5.
Volume: 11
Issue: 4
Pages: 1167-9
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Publication
- | J:77000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: MGC Data curation in Mouse Genome Informatics
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Publication
- | J:94790
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Mouse Synonym Curation
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Publication
- | J:155845
     
First Author: Wellcome Trust Sanger Institute
Year: 2010
Journal: MGI Direct Data Submission
Title: Alleles produced for the EUCOMM and EUCOMMTools projects by the Wellcome Trust Sanger Institute
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Publication
- | J:326541
       
First Author: Cyagen Biosciences Inc.
Year: 2022
Title: Cyagen Biosciences Website.
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Publication
- | J:342605
       
First Author: GOA curators
Year: 2016
Title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
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Publication
- | J:342604
       
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
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Publication
- | J:155856
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Title: Rat to Mouse ISO GO annotation transfer
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Publication
- | J:85000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Title: MGI Sequence Curation Reference
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Publication
- | J:78475
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Chromosome assignment of mouse genes using the Mouse Genome Sequencing Consortium (MGSC) assembly and the ENSEMBL Database
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Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
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Publication
11217851 | J:65060
First Author: Kawai J
Year: 2001
Journal: Nature
Title: Functional annotation of a full-length mouse cDNA collection.
Volume: 409
Issue: 6821
Pages: 685-90
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Publication
- | J:141210
     
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
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Publication
14610273 | J:86696
First Author: Zambrowicz BP
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
Volume: 100
Issue: 24
Pages: 14109-14
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Publication
21677750 | J:173534
First Author: Skarnes WC
Year: 2011
Journal: Nature
Title: A conditional knockout resource for the genome-wide study of mouse gene function.
Volume: 474
Issue: 7351
Pages: 337-42
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Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
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Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
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Publication
- | J:164563
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Title: Human to Mouse ISO GO annotation transfer
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Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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Author
Sri S
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Author
Sri Widada J
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Allele
Atm<tm1Mfl> | MGI:2181756
Name: ataxia telangiectasia mutated; targeted mutation 1, Martin F Lavin
Allele Type: Targeted
Attribute String: Null/knockout
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Publication
26979420 | J:236754
 
First Author: Chamma I
Year: 2016
Journal: Nat Commun
Title: Mapping the dynamics and nanoscale organization of synaptic adhesion proteins using monomeric streptavidin.
Volume: 7
Pages: 10773
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Protein Domain
IPR038190 | SRI_sf
Type: Homologous_superfamily
Description: The SRI (Set2 Rpb1 interacting) domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation []. This domain is conserved from yeast to humans. Members of this family form a compact, closed three-helix bundle, with an up-down-up topology. The first and second helices are antiparallel to each other and are of similar length; the third helix, which is packed across helices alpha1 and alpha2 is slightly shorter, consisting of only 15 amino acids. Most conserved hydrophobic residues are largely buried in the interior of the structure and form an extensive and contiguous hydrophobic core that stabilises the packing of the three-helix bundle. This domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation [, ].
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MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

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