|  Help  |  About  |  Contact Us

Search our database by keyword

Examples

  • Search this entire website. Enter identifiers, names or keywords for genes, diseases, strains, ontology terms, etc. (e.g. Pax6, Parkinson, ataxia)
  • Use OR to search for either of two terms (e.g. OR mus) or quotation marks to search for phrases (e.g. "dna binding").
  • Boolean search syntax is supported: e.g. Balb* for partial matches or mus AND NOT embryo to exclude a term

Search results 1 to 85 out of 85 for Taf1b

0.02s

Categories

Hits by Pathway

Hits by Category

Hits by Strain

Type Details Score
Gene
9014 | TAF1B
Type: gene
Organism: human
•
•
•
•
•
Gene
100379921 | taf1b
Type: gene
Organism: frog, western clawed
•
•
•
•
•
Gene
690450 | Taf1b
Type: gene
Organism: rat
•
•
•
•
•
Gene
459022 | TAF1B
Type: gene
Organism: chimpanzee
•
•
•
•
•
Gene
511236 | TAF1B
Type: gene
Organism: cattle
•
•
•
•
•
Gene
100684854 | TAF1B
Type: gene
Organism: dog, domestic
•
•
•
•
•
Gene
421933 | TAF1B
Type: gene
Organism: chicken
•
•
•
•
•
Gene
449647 | taf1b
Type: gene
Organism: zebrafish
•
•
•
•
•
Gene
701733 | TAF1B
Type: gene
Organism: macaque, rhesus
•
•
•
•
•
Protein Coding Gene
MGI:109577 | Taf1b
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Publication
35139074 | J:321558
First Author: Tremblay MG
Year: 2022
Journal: PLoS Genet
Title: Ribosomal DNA promoter recognition is determined in vivo by cooperation between UBTF1 and SL1 and is compromised in the UBTF-E210K neuroregression syndrome.
Volume: 18
Issue: 2
Pages: e1009644
•
•
•
•
•
Protein Coding Gene
MGP_CAROLIEiJ_G0017644 | -
Type: protein_coding_gene
Organism: Mus caroli
•
•
•
•
•
Protein Coding Gene
MGP_129S1SvImJ_G0019628 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_AJ_G0019595 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_AKRJ_G0019566 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_BALBcJ_G0019572 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_C3HHeJ_G0019376 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGI_C57BL6J_109577 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_C57BL6NJ_G0020020 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_CASTEiJ_G0018931 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_DBA2J_G0019461 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_FVBNJ_G0019452 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_LPJ_G0019531 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_NODShiLtJ_G0019487 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_NZOHlLtJ_G0020059 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_PWKPhJ_G0018698 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_WSBEiJ_G0018982 | -
Type: protein_coding_gene
Organism: mouse, laboratory
•
•
•
•
•
Protein Coding Gene
MGP_PahariEiJ_G0029401 | -
Type: protein_coding_gene
Organism: Mus pahari
•
•
•
•
•
Protein Coding Gene
MGP_SPRETEiJ_G0018485 | -
Type: protein_coding_gene
Organism: Mus spretus
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:4844542
Assay Type: RNA in situ
Annotation Date: 2010-12-22
Strength: Moderate
Sex: Not Specified
Emaps: EMAPS:1640519
Pattern: Regionally restricted
Stage: TS19
Assay Id: MGI:4848469
Age: embryonic day 11.5
Note: Staining is present in the interdigital region of the limb.
Specimen Label: Table S4 - E11.5
Detected: true
Specimen Num: 2
•
•
•
•
•
GXD Expression
GXD Expression
   
Probe: MGI:4844542
Assay Type: RNA in situ
Annotation Date: 2010-12-22
Strength: Strong
Sex: Not Specified
Emaps: EMAPS:1610517
Pattern: Not Specified
Stage: TS17
Assay Id: MGI:4848469
Age: embryonic day 10.5
Specimen Label: Table S4 - E10.5
Detected: true
Specimen Num: 1
•
•
•
•
•
Publication
21228480 | J:173136
First Author: Qiu H
Year: 2011
Journal: Biosci Biotechnol Biochem
Title: Identification of novel nuclear protein interactions with the N-terminal part of filamin A.
Volume: 75
Issue: 1
Pages: 145-7
•
•
•
•
•
Publication
2924801 | J:35896
First Author: Almendral JM
Year: 1989
Journal: Exp Cell Res
Title: Expression, cloning and cDNA sequence of a fibroblast serum-regulated gene encoding a putative actin-associated protein (p27).
Volume: 181
Issue: 2
Pages: 518-30
•
•
•
•
•
Publication
14697507 | J:87845
 
First Author: Wang Z
Year: 2004
Journal: Gene
Title: Gene structure and evolution of Tieg3, a new member of the Tieg family of proteins.
Volume: 325
Pages: 25-34
•
•
•
•
•
Publication
23441852 | J:201464
First Author: Eckey M
Year: 2013
Journal: FEBS J
Title: The corepressor activity of Alien is controlled by CREB-binding protein/p300.
Volume: 280
Issue: 8
Pages: 1861-8
•
•
•
•
•
Publication
9050847 | J:39012
First Author: Heix J
Year: 1997
Journal: Proc Natl Acad Sci U S A
Title: Cloning of murine RNA polymerase I-specific TAF factors: conserved interactions between the subunits of the species-specific transcription initiation factor TIF-IB/SL1.
Volume: 94
Issue: 5
Pages: 1733-8
•
•
•
•
•
Publication
24928901 | J:216243
First Author: Murano K
Year: 2014
Journal: J Cell Sci
Title: Reconstitution of human rRNA gene transcription in mouse cells by a complete SL1 complex.
Volume: 127
Issue: Pt 15
Pages: 3309-19
•
•
•
•
•
Publication
24492243 | J:210838
First Author: Adolphe C
Year: 2014
Journal: J Invest Dermatol
Title: Patched 1 and patched 2 redundancy has a key role in regulating epidermal differentiation.
Volume: 134
Issue: 7
Pages: 1981-1990
•
•
•
•
•
Publication
25859222 | J:237754
 
First Author: Maga AM
Year: 2015
Journal: Front Physiol
Title: Quantitative trait loci affecting the 3D skull shape and size in mouse and prioritization of candidate genes in-silico.
Volume: 6
Pages: 92
•
•
•
•
•
Publication
- | J:68100
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2001
Title: RIKEN Data Curation in Mouse Genome Informatics
•
•
•
•
•
Publication
20059953 | J:156017
First Author: Yokoyama S
Year: 2009
Journal: Dev Cell
Title: A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58.
Volume: 17
Issue: 6
Pages: 836-48
•
•
•
•
•
Publication
- | J:94790
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Mouse Synonym Curation
•
•
•
•
•
Publication
17967808 | J:152068
First Author: Friedel RH
Year: 2007
Journal: Brief Funct Genomic Proteomic
Title: EUCOMM--the European conditional mouse mutagenesis program.
Volume: 6
Issue: 3
Pages: 180-5
•
•
•
•
•
Publication
- | J:157065
     
First Author: Helmholtz Zentrum Muenchen GmbH
Year: 2010
Journal: MGI Direct Data Submission
Title: Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu)
•
•
•
•
•
Publication
- | J:85000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Title: MGI Sequence Curation Reference
•
•
•
•
•
Publication
- | J:78475
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Chromosome assignment of mouse genes using the Mouse Genome Sequencing Consortium (MGSC) assembly and the ENSEMBL Database
•
•
•
•
•
Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
•
•
•
•
•
Publication
11217851 | J:65060
First Author: Kawai J
Year: 2001
Journal: Nature
Title: Functional annotation of a full-length mouse cDNA collection.
Volume: 409
Issue: 6821
Pages: 685-90
•
•
•
•
•
Publication
14610273 | J:86696
First Author: Zambrowicz BP
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
Volume: 100
Issue: 24
Pages: 14109-14
•
•
•
•
•
Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
•
•
•
•
•
Publication
- | J:141210
     
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
•
•
•
•
•
Publication
- | J:342587
       
First Author: AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators
Year: 2011
Title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
•
•
•
•
•
Publication
- | J:60000
       
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
•
•
•
•
•
Publication
- | J:342605
       
First Author: GOA curators
Year: 2016
Title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
•
•
•
•
•
Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
•
•
•
•
•
Publication
- | J:164563
       
First Author: The Gene Ontology Consortium
Year: 2010
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
•
•
•
•
•
Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
•
•
•
•
•
Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
•
•
•
•
•
Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
•
•
•
•
•
Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
•
•
•
•
•
Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
•
•
•
•
•
Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
•
•
•
•
•
Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
•
•
•
•
•
Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
•
•
•
•
•
Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
•
•
•
•
•
Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
•
•
•
•
•
Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
•
•
•
•
•
Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
•
•
•
•
•
Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
•
•
•
•
•
Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
•
•
•
•
•
Publication
21921198 | -
First Author: Knutson BA
Year: 2011
Journal: Science
Title: Yeast Rrn7 and human TAF1B are TFIIB-related RNA polymerase I general transcription factors.
Volume: 333
Issue: 6049
Pages: 1637-40
•
•
•
•
•
Publication
21921199 | -
First Author: Naidu S
Year: 2011
Journal: Science
Title: TAF1B is a TFIIB-like component of the basal transcription machinery for RNA polymerase I.
Volume: 333
Issue: 6049
Pages: 1640-2
•
•
•
•
•
Publication
31434704 | J:280394
First Author: Agger K
Year: 2019
Journal: Blood
Title: The KDM4/JMJD2 histone demethylases are required for hematopoietic stem cell maintenance.
Volume: 134
Issue: 14
Pages: 1154-1158
•
•
•
•
•
Protein Domain
IPR033599 | TAF1B/Rrn7
Type: Family
Description: Rrn7 is a subunit of the yeast Pol I core factor. It associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein, and is required for transcription by the core domain of the RNA Pol I promoter [, , ].Rrn7 human orthologue, TATA box-binding protein-associated factor RNA polymerase I subunit B (TAF1B), is also a component of RNA polymerase I core factor complex. It acts as a GTF2B/TFIIB-like factor and plays a key role in multiple steps during transcription initiation []. Both Rrn7 and TAF1B are TFIIB-like factors. Although distantly related, they share many activities associated with TFIIB-like factors [].
•
•
•
•
•
Protein
P97358
Organism: Mus musculus/domesticus
Length: 586  
Fragment?: false
•
•
•
•
•
Publication
7491500 | -
First Author: Beckmann H
Year: 1995
Journal: Science
Title: Coactivator and promoter-selective properties of RNA polymerase I TAFs.
Volume: 270
Issue: 5241
Pages: 1506-9
•
•
•
•
•
Publication
8887672 | -
First Author: Lin CW
Year: 1996
Journal: Mol Cell Biol
Title: A novel 66-kilodalton protein complexes with Rrn6, Rrn7, and TATA-binding protein to promote polymerase I transcription initiation in Saccharomyces cerevisiae.
Volume: 16
Issue: 11
Pages: 6436-43
•
•
•
•
•
Protein Domain
IPR016629 | RNA_pol_I_TAF1A/TAFI48_chr
Type: Family
Description: This entry represents subunit A (TATA-binding protein-associated factor TAFI48 or TAF1A) of RNA polymerase I. It is a component of the transcription factor SL1/TIFIB complex involved in the assembly of the pre-initiation complex (PIC). The SL1/TIFIB complex is composed of TBP (TATA-binding protein) and TAF1A (TAFI48), TAF1B (TAFI63) and TAF1C (TAFI110) []. Human ribosomal RNA synthesis by RNA polymerase I requires the activator UBF and the promoter selectivity factor SL1/TIFIB. Both TAF1B/TAFI63 and TAF1C/TAFI110 contact the promoter, whereas TAF1A/TAFI48 serves as a target for interaction with UBF and is required to form a transcriptionally active SL1/TIFIB complex responsive to UBF []. Interaction of the SL1/TIFIB subunits with TBP excluded interaction with the transcription factor IID (TFIID) subunits []. This mutually exclusive binding directs the formation of promoter- and RNA polymerase-selective TBP-TAF complexes. Therefore, TAF1A/TAFI48 may function both as a target to mediate UBF activation and as a class-specific promoter selectivity factor.
•
•
•
•
•
Protein
P97357
Organism: Mus musculus/domesticus
Length: 453  
Fragment?: false
•
•
•
•
•
Protein
Q3V054
Organism: Mus musculus/domesticus
Length: 456  
Fragment?: true
•
•
•
•
•
Protein
B9EHT7
Organism: Mus musculus/domesticus
Length: 440  
Fragment?: false
•
•
•
•
•
Publication
7958901 | -
First Author: Keys DA
Year: 1994
Journal: Genes Dev
Title: RRN6 and RRN7 encode subunits of a multiprotein complex essential for the initiation of rDNA transcription by RNA polymerase I in Saccharomyces cerevisiae.
Volume: 8
Issue: 19
Pages: 2349-62
•
•
•
•
•
Publication
17318177 | -
First Author: Gorski JJ
Year: 2007
Journal: EMBO J
Title: A novel TBP-associated factor of SL1 functions in RNA polymerase I transcription.
Volume: 26
Issue: 6
Pages: 1560-8
•
•
•
•
•
Publication
15970593 | -
First Author: Friedrich JK
Year: 2005
Journal: J Biol Chem
Title: TBP-TAF complex SL1 directs RNA polymerase I pre-initiation complex formation and stabilizes upstream binding factor at the rDNA promoter.
Volume: 280
Issue: 33
Pages: 29551-8
•
•
•
•
•
Publication
28340337 | -
First Author: Engel C
Year: 2017
Journal: Cell
Title: Structural Basis of RNA Polymerase I Transcription Initiation.
Volume: 169
Issue: 1
Pages: 120-131.e22
•
•
•
•
•




MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

Copyright © 2017 by The Jackson Laboratory. All Rights Reserved

© 2002 - 2017 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom