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Search results 1 to 100 out of 179 for Tom1

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Type Details Score
Gene
Type: gene
Organism: human
Gene
Type: gene
Organism: rat
Gene
Type: gene
Organism: chimpanzee
Gene
Type: gene
Organism: dog, domestic
Gene
Type: gene
Organism: cattle
Gene
Type: gene
Organism: chicken
Gene
Type: gene
Organism: zebrafish
Gene
Type: gene
Organism: macaque, rhesus
Gene
Type: gene
Organism: frog, western clawed
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Domain
Type: Family
Description: Tom1 (target of Myb 1) and its related proteins (Tom1L1 and Tom1L2) constitute a protein family and share an N-terminal VHS (Vps27p/Hrs/Stam) domain followed by a GAT (GGA and Tom1) domain.VHS domains are found at the N termini of select proteins involved in intracellular membrane trafficking and are often localized to membranes. The three dimensional structure of human TOM1 VHS domain reveals eight helices arranged in a superhelix. The surface of the domain has two main features: (1) a basic patch on one side due to several conserved positively charged residues on helix 3 and (2) a negatively charged ridge on the opposite side, formed by residues on helix 2 []. The basic patch is thought to mediate membrane binding.It was demonstrated that the GAT domain of both Tom1 and Tom1L1 binds ubiquitin, suggesting that these proteins might participate in the sorting of ubiquitinated proteins into multivesicular bodies (MVB) []. Moreover, Tom1L1 interacts with members of the MVB sorting machinery. Specifically, the VHS domain of Tom1L1 interacts with Hrs (hepatocyte growth factor-regulated tyrosine kinase substrate), whereas a PTAP motif, located between the VHS and GAT domains of Tom1L1, is responsible for binding to TSG101 (tumour susceptibility gene 101). Myc epitope-tagged Tom1L1 is recruited to endosomes following Hrs expression. In addition, Tom1L1 possesses several tyrosine motifs at the C-terminal region that mediate interactions with members of the Src family kinases and other signalling proteins such as Grb2 and p85. Expression of a constitutively active form of Fyn kinase promotes the recruitment of Tom1L1 to enlarged endosomes. It is proposed that Tom1L1 could act as an intermediary between the signalling and degradative pathways [].Over expression of Tom1 suppresses activation of the transcription factors NF-kappaB and AP-1, induced by either IL-1beta or tumour necrosis factor (TNF)-alpha, and the VHS domain of Tom1 is indispensable for this suppressive activity. This suggests that Tom1 is a common negative regulator of signalling pathways induced by IL-1beta and TNF-alpha [].
Publication
First Author: Yamakami M
Year: 2003
Journal: J Biol Chem
Title: Tom1, a VHS domain-containing protein, interacts with tollip, ubiquitin, and clathrin.
Volume: 278
Issue: 52
Pages: 52865-72
Publication
First Author: Gwon Y
Year: 2018
Journal: J Neurosci
Title: TOM1 Regulates Neuronal Accumulation of Amyloid-β Oligomers by FcγRIIb2 Variant in Alzheimer's Disease.
Volume: 38
Issue: 42
Pages: 9001-9018
Publication
First Author: Yamakami M
Year: 2004
Journal: Biol Pharm Bull
Title: Tom1 (target of Myb 1) is a novel negative regulator of interleukin-1- and tumor necrosis factor-induced signaling pathways.
Volume: 27
Issue: 4
Pages: 564-6
Publication
First Author: Seroussi E
Year: 1999
Journal: Genomics
Title: TOM1 genes map to human chromosome 22q13.1 and mouse chromosome 8C1 and encode proteins similar to the endosomal proteins HGS and STAM.
Volume: 57
Issue: 3
Pages: 380-8
Publication
First Author: Misra S
Year: 2000
Journal: Biochemistry
Title: Structure of the VHS domain of human Tom1 (target of myb 1): insights into interactions with proteins and membranes.
Volume: 39
Issue: 37
Pages: 11282-90
Publication
First Author: Puertollano R
Year: 2005
Journal: J Biol Chem
Title: Interactions of TOM1L1 with the multivesicular body sorting machinery.
Volume: 280
Issue: 10
Pages: 9258-64
Protein
Organism: Mus musculus/domesticus
Length: 474  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 492  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 507  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 474  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 397  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 516  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 462  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 457  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 492  
Fragment?: false
Protein Coding Gene
Type: protein_coding_gene
Organism: Mus caroli
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: Mus pahari
Protein Coding Gene
Type: protein_coding_gene
Organism: Mus spretus
GXD Expression  
Probe: MGI:3795945
Assay Type: RNA in situ
Annotation Date: 2008-07-02
Strength: Strong
Sex: Not Specified
Emaps: EMAPS:3267828
Pattern: Regionally restricted
Stage: TS28
Assay Id: MGI:3795946
Age: postnatal adult
Note: Expression is in the medial lemniscus.
Specimen Label: 3C
Detected: true
Specimen Num: 2
GXD Expression    
Probe: MGI:3795945
Assay Type: RNA in situ
Annotation Date: 2008-07-02
Strength: Strong
Sex: Not Specified
Emaps: EMAPS:3284528
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:3795946
Age: postnatal adult
Specimen Label: 3C
Detected: true
Specimen Num: 2
GXD Expression    
Probe: MGI:3795945
Assay Type: RNA in situ
Annotation Date: 2008-07-02
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1603925
Pattern: Ubiquitous
Stage: TS25
Assay Id: MGI:3795946
Age: embryonic day 17.5
Specimen Label: 3A
Detected: true
Specimen Num: 1
GXD Expression    
Probe: MGI:3795945
Assay Type: RNA in situ
Annotation Date: 2008-07-02
Strength: Strong
Sex: Not Specified
Emaps: EMAPS:3522328
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:3795946
Age: postnatal adult
Specimen Label: 3C
Detected: true
Specimen Num: 2
GXD Expression    
Probe: MGI:3795945
Assay Type: RNA in situ
Annotation Date: 2008-07-02
Strength: Strong
Sex: Not Specified
Emaps: EMAPS:3287425
Pattern: Not Specified
Stage: TS25
Assay Id: MGI:3795946
Age: embryonic day 17.5
Specimen Label: 3A
Detected: true
Specimen Num: 1
GXD Expression    
Probe: MGI:3795945
Assay Type: RNA in situ
Annotation Date: 2008-07-02
Strength: Strong
Sex: Not Specified
Emaps: EMAPS:1754028
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:3795946
Age: postnatal adult
Specimen Label: 3C
Detected: true
Specimen Num: 2
GXD Expression    
Probe: MGI:3795945
Assay Type: RNA in situ
Annotation Date: 2008-07-02
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1689425
Pattern: Ubiquitous
Stage: TS25
Assay Id: MGI:3795946
Age: embryonic day 17.5
Specimen Label: 3A
Detected: true
Specimen Num: 1
GXD Expression    
Probe: MGI:3795945
Assay Type: RNA in situ
Annotation Date: 2008-07-02
Strength: Strong
Sex: Not Specified
Emaps: EMAPS:3521728
Pattern: Not Specified
Stage: TS28
Assay Id: MGI:3795946
Age: postnatal adult
Specimen Label: 3C
Detected: true
Specimen Num: 2
Publication        
First Author: Mouse Genome Sequence and Mouse Genome Informatics Scientific Curators
Year: 2001
Title: Mouse Genome Sequence Project Annotation
Publication
First Author: Hansen J
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome.
Volume: 100
Issue: 17
Pages: 9918-22
Publication      
First Author: MGI and IMPC
Year: 2018
Journal: Database Release
Title: MGI Load of Endonuclease-Mediated Alleles (CRISPR) from the International Mouse Phenotyping Consortium (IMPC)
Publication      
First Author: Helmholtz Zentrum Muenchen GmbH
Year: 2010
Journal: MGI Direct Data Submission
Title: Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu)
Publication        
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Publication        
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Title: MGI Sequence Curation Reference
Publication
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
Publication
First Author: Kawai J
Year: 2001
Journal: Nature
Title: Functional annotation of a full-length mouse cDNA collection.
Volume: 409
Issue: 6821
Pages: 685-90
Publication      
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
Publication        
First Author: Mouse Genome Informatics Scientific Curators
Year: 2000
Title: Gene Ontology Annotation by electronic association of SwissProt Keywords with GO terms
Publication        
First Author: AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators
Year: 2011
Title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
Publication      
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
Publication
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
Publication        
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Title: Human to Mouse ISO GO annotation transfer
Publication        
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
Publication      
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
Publication        
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
Publication      
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
Publication      
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
Publication      
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
Publication        
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
Publication      
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
Publication      
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
Publication      
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
Publication        
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
Publication      
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
Publication      
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
Publication
First Author: Blanc C
Year: 2009
Journal: Traffic
Title: Dictyostelium Tom1 participates to an ancestral ESCRT-0 complex.
Volume: 10
Issue: 2
Pages: 161-71
Publication
First Author: Fujisaki K
Year: 2006
Journal: J Gen Virol
Title: Involvement of THH1, an Arabidopsis thaliana homologue of the TOM1 gene, in tobamovirus multiplication.
Volume: 87
Issue: Pt 8
Pages: 2397-401
Protein Domain
Type: Domain
Description: This domain is found in plant proteins including THH1/TOM1/TOM3 from Arabidopsis. TOM1 and TOM3 are transmembrane proteins necessary for the efficient multiplication of tobamoviruses []. THH1 supports tobamovirus multiplication, but to a lesser extent than TOM1 and TOM3 []. Members containing this domain are part of the GPCR superfamily and involved in stress tolerance [, ].
Protein Domain
Type: Family
Description: This entry represents a group of plant proteins, including THH1/TOM1/TOM3 from Arabidopsis. TOM1 and TOM3 are transmembrane proteins necessary for the efficient multiplication of tobamoviruses []. THH1 supports tobamovirus multiplication, but to a lesser extent than TOM1 and TOM3 []. Proteins in this family belong to the GCPR superfamily and are also involved in stress tolerance [, ].
Publication
First Author: Yamanaka T
Year: 2002
Journal: J Virol
Title: Complete inhibition of tobamovirus multiplication by simultaneous mutations in two homologous host genes.
Volume: 76
Issue: 5
Pages: 2491-7
Publication
First Author: Lu P
Year: 2019
Journal: BMC Genomics
Title: Genome-wide analysis of the cotton G-coupled receptor proteins (GPCR) and functional analysis of GTOM1, a novel cotton GPCR gene under drought and cold stress.
Volume: 20
Issue: 1
Pages: 651
Publication  
First Author: Lu P
Year: 2018
Journal: Genes (Basel)
Title: A Novel G-Protein-Coupled Receptors Gene from Upland Cotton Enhances Salt Stress Tolerance in Transgenic Arabidopsis.
Volume: 9
Issue: 4
Publication
First Author: Martini AC
Year: 2019
Journal: Proc Natl Acad Sci U S A
Title: Amyloid-beta impairs TOM1-mediated IL-1R1 signaling.
Volume: 116
Issue: 42
Pages: 21198-21206
Publication
First Author: Girirajan S
Year: 2008
Journal: Mamm Genome
Title: Tom1l2 hypomorphic mice exhibit increased incidence of infections and tumors and abnormal immunologic response.
Volume: 19
Issue: 4
Pages: 246-62
Publication
First Author: Tumbarello DA
Year: 2012
Journal: Nat Cell Biol
Title: Autophagy receptors link myosin VI to autophagosomes to mediate Tom1-dependent autophagosome maturation and fusion with the lysosome.
Volume: 14
Issue: 10
Pages: 1024-35
Publication
First Author: Moulinier-Anzola J
Year: 2014
Journal: Plant Signal Behav
Title: Expression of Arabidopsis TOL genes.
Volume: 9
Issue: 4
Pages: e28667
Publication
First Author: Korbei B
Year: 2013
Journal: Curr Biol
Title: Arabidopsis TOL proteins act as gatekeepers for vacuolar sorting of PIN2 plasma membrane protein.
Volume: 23
Issue: 24
Pages: 2500-5
Protein Domain
Type: Family
Description: This entry includes TOM1-like protein 1-9 (TOL1-9) from Arabidopsis [, ]. In general, they contain the VHS and GAT domains that bind to phospholipids and ubiquitin []. They may be part of the ESCRT (Endosomal Sorting Complex Required for Transport) complex contributing to the sorting of ubiquinated proteins to the MVB (multivesicular body) formation machinery. In plants they play a role in the control of plant morphogenesis []. This entry also includes TOM1 from Dictyostelium discoideum [].
Publication
First Author: Burns K
Year: 2000
Journal: Nat Cell Biol
Title: Tollip, a new component of the IL-1RI pathway, links IRAK to the IL-1 receptor.
Volume: 2
Issue: 6
Pages: 346-51
Protein Domain
Type: Domain
Description: Tollip (Toll-interacting protein) is a component of the IL-1RI pathway which contains an N-terminal C2 domain and a C-terminal CUE domain. Tollip binds to the cytoplasmic TIR domain of IL-1Rs after IL-1 stimulation. It is sufficient for recruitment of IRAK to IL-1Rs and negatively regulates IL-1-induced signaling by inhibiting IRAK phosphorylation. In addition, Tollip directly interacts with toll-like receptors TLR2 and TLR4, and plays an inhibitory role in TLR-mediated cell activation through suppressing phosphorylation and kinase activity of IRAK. Moreover, Tollip can associate with GAT domains of Tom1 and its related proteins Tom1L1 and Tom1L2, and facilitate the recruitment of clathrin onto endosomes [, ].
Publication
First Author: Franco M
Year: 2006
Journal: Mol Cell Biol
Title: The adaptor protein Tom1L1 is a negative regulator of Src mitogenic signaling induced by growth factors.
Volume: 26
Issue: 5
Pages: 1932-47
Publication
First Author: Brissoni B
Year: 2006
Journal: Curr Biol
Title: Intracellular trafficking of interleukin-1 receptor I requires Tollip.
Volume: 16
Issue: 22
Pages: 2265-70
Publication
First Author: Schultz J
Year: 1998
Journal: Proc Natl Acad Sci U S A
Title: SMART, a simple modular architecture research tool: identification of signaling domains.
Volume: 95
Issue: 11
Pages: 5857-64
Publication
First Author: Lohi O
Year: 1998
Journal: FEBS Lett
Title: VHS domain marks a group of proteins involved in endocytosis and vesicular trafficking.
Volume: 440
Issue: 3
Pages: 255-7
Protein Domain
Type: Domain
Description: The VHS domain is an about 150 residues long domain, whose name is derivedfrom its occurrence in VPS-27, Hrs and STAM. The VHS domain is found at the N-termini of proteins associated with endocytocis and/or vesicular trafficking,often in association with other domains like FYVE, SH3 or TAM [, ]. The VHS domain of Hrs makes both intra- andintermolecular interactions with FYVE domains and it has been proposed that itmight as well interact with other domains. The VHS domain might function as amultipurpose docking adapter that localizes proteins to the membrane throughinteractions with the membrane and/or the endocytic machinery [, ].Resolution of the crystal structure of the VHS domain of Drosophila Hrs andhuman Tom1 revealed that it consists of eight helices arranged in a superhelix[, ].