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Search results 1 to 88 out of 88 for Vps16

0.182s

Categories

Hits by Category

Hits by Strain

Type Details Score
Gene
64601 | VPS16
Type: gene
Organism: human
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Gene
296159 | Vps16
Type: gene
Organism: rat
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Gene
505361 | VPS16
Type: gene
Organism: cattle
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Gene
100856310 | VPS16
Type: gene
Organism: dog, domestic
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Gene
101057857 | VPS16
Type: gene
Organism: chimpanzee
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Gene
426571 | VPS16
Type: gene
Organism: chicken
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Gene
798985 | vps16
Type: gene
Organism: zebrafish
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Gene
100426686 | VPS16
Type: gene
Organism: macaque, rhesus
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Gene
448414 | vps16
Type: gene
Organism: frog, western clawed
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Protein Coding Gene
MGI:2136772 | Vps16
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Domain
IPR016534 | VPS16
Type: Family
Description: This group represents a vacuolar protein sorting-associated protein 16 (Vps16). Vps16 may play a role in vesicle-mediated protein trafficking to endosomal/lysosomal compartments and in membrane docking/fusion reactions [, , ].
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Publication
27174565 | J:243974
 
First Author: Cai X
Year: 2016
Journal: Sci Rep
Title: Homozygous mutation of VPS16 gene is responsible for an autosomal recessive adolescent-onset primary dystonia.
Volume: 6
Pages: 25834
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Protein
Q920Q4
Organism: Mus musculus/domesticus
Length: 839  
Fragment?: false
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Protein
Q8C016
Organism: Mus musculus/domesticus
Length: 424  
Fragment?: false
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Protein
G3X8X7
Organism: Mus musculus/domesticus
Length: 839  
Fragment?: false
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Protein
Q8BWV2
Organism: Mus musculus/domesticus
Length: 839  
Fragment?: false
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Protein
A2BI90
Organism: Mus musculus/domesticus
Length: 316  
Fragment?: true
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Publication
11250079 | J:68182
First Author: Huizing M
Year: 2001
Journal: Gene
Title: Molecular cloning and characterization of human VPS18, VPS 11, VPS16, and VPS33.
Volume: 264
Issue: 2
Pages: 241-7
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Publication
16601699 | -
First Author: Stroupe C
Year: 2006
Journal: EMBO J
Title: Purification of active HOPS complex reveals its affinities for phosphoinositides and the SNARE Vam7p.
Volume: 25
Issue: 8
Pages: 1579-89
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Publication
15843430 | -
First Author: Hermann GJ
Year: 2005
Journal: Mol Biol Cell
Title: Genetic analysis of lysosomal trafficking in Caenorhabditis elegans.
Volume: 16
Issue: 7
Pages: 3273-88
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Protein Coding Gene
MGP_CAROLIEiJ_G0024303 | -
Type: protein_coding_gene
Organism: Mus caroli
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Protein Coding Gene
MGP_129S1SvImJ_G0026505 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AJ_G0026469 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AKRJ_G0026444 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_BALBcJ_G0026481 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C3HHeJ_G0026224 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGI_C57BL6J_2136772 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C57BL6NJ_G0026926 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CASTEiJ_G0025685 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CBAJ_G0026204 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_DBA2J_G0026338 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_FVBNJ_G0026302 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_LPJ_G0026443 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NODShiLtJ_G0026322 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NZOHlLtJ_G0026981 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PWKPhJ_G0025421 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_WSBEiJ_G0025759 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PahariEiJ_G0025748 | -
Type: protein_coding_gene
Organism: Mus pahari
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Protein Coding Gene
MGP_SPRETEiJ_G0025223 | -
Type: protein_coding_gene
Organism: Mus spretus
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Publication
- | J:69437
   
First Author: Strausberg R
Year: 2001
Journal: GenBank Submission
Title: Mus musculus, clone MGC: 7352, mRNA, complete cds
Pages: BC003944
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Publication
21411634 | J:222677
First Author: Zlatic SA
Year: 2011
Journal: Mol Biol Cell
Title: Clathrin-dependent mechanisms modulate the subcellular distribution of class C Vps/HOPS tether subunits in polarized and nonpolarized cells.
Volume: 22
Issue: 10
Pages: 1699-715
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Publication
19109425 | J:159132
First Author: Zhu GD
Year: 2009
Journal: Mol Biol Cell
Title: SPE-39 family proteins interact with the HOPS complex and function in lysosomal delivery.
Volume: 20
Issue: 4
Pages: 1223-40
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Publication
25266290 | J:222663
First Author: Perini ED
Year: 2014
Journal: Traffic
Title: Mammalian CORVET is required for fusion and conversion of distinct early endosome subpopulations.
Volume: 15
Issue: 12
Pages: 1366-89
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Publication
14668490 | J:90042
First Author: Richardson SC
Year: 2004
Journal: Mol Biol Cell
Title: Mammalian late vacuole protein sorting orthologues participate in early endosomal fusion and interact with the cytoskeleton.
Volume: 15
Issue: 3
Pages: 1197-210
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Publication
24550300 | J:206800
First Author: Pirooz SD
Year: 2014
Journal: Proc Natl Acad Sci U S A
Title: UVRAG is required for virus entry through combinatorial interaction with the class C-Vps complex and SNAREs.
Volume: 111
Issue: 7
Pages: 2716-21
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Publication
16919269 | J:112701
First Author: Bailey PJ
Year: 2006
Journal: Exp Cell Res
Title: A global genomic transcriptional code associated with CNS-expressed genes.
Volume: 312
Issue: 16
Pages: 3108-19
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Publication
- | J:80001
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: FANTOM2 Data Curation in Mouse Genome Informatics
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Publication
- | J:148605
     
First Author: Wellcome Trust Sanger Institute
Year: 2009
Journal: MGI Direct Data Submission
Title: Alleles produced for the KOMP project by the Wellcome Trust Sanger Institute
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Publication
- | J:155856
       
First Author: The Gene Ontology Consortium
Year: 2014
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-rat orthologs
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Publication
- | J:342604
       
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
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Publication
- | J:72247
       
First Author: DDB, FB, MGI, GOA, ZFIN curators
Year: 2001
Title: Gene Ontology annotation through association of InterPro records with GO terms
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Publication
- | J:78475
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Chromosome assignment of mouse genes using the Mouse Genome Sequencing Consortium (MGSC) assembly and the ENSEMBL Database
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Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
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Publication
11217851 | J:65060
First Author: Kawai J
Year: 2001
Journal: Nature
Title: Functional annotation of a full-length mouse cDNA collection.
Volume: 409
Issue: 6821
Pages: 685-90
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Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
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Publication
21677750 | J:173534
First Author: Skarnes WC
Year: 2011
Journal: Nature
Title: A conditional knockout resource for the genome-wide study of mouse gene function.
Volume: 474
Issue: 7351
Pages: 337-42
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Publication
- | J:141210
     
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
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Publication
- | J:60000
       
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
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Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
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Publication
- | J:164563
       
First Author: The Gene Ontology Consortium
Year: 2010
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
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Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
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Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:57747
     
First Author: MGI Genome Annotation Group and UniGene Staff
Year: 2015
Journal: Database Download
Title: MGI-UniGene Interconnection Effort
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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Publication
25783203 | -
First Author: Wartosch L
Year: 2015
Journal: Traffic
Title: Recruitment of VPS33A to HOPS by VPS16 Is Required for Lysosome Fusion with Endosomes and Autophagosomes.
Volume: 16
Issue: 7
Pages: 727-42
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Interaction Experiment
Kim BY (2003)
Description: Identification of mouse Vps16 and biochemical characterization of mammalian class C Vps complex.
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Publication
14623309 | -
First Author: Kim BY
Year: 2003
Journal: Biochem Biophys Res Commun
Title: Identification of mouse Vps16 and biochemical characterization of mammalian class C Vps complex.
Volume: 311
Issue: 3
Pages: 577-82
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Publication
32808683 | -
First Author: Steel D
Year: 2020
Journal: Ann Neurol
Title: Loss-of-Function Variants in HOPS Complex Genes VPS16 and VPS41 Cause Early Onset Dystonia Associated with Lysosomal Abnormalities.
Volume: 88
Issue: 5
Pages: 867-877
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Protein Domain
IPR006925 | Vps16_C
Type: Domain
Description: Vps16 forms part of the Class C vacuolar protein sorting (Vps) complex. It is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.The C-terminal domain of Vps16 binds to Vps33 for integration into the HOPS complex [, ].
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Protein Domain
IPR038132 | Vps16_C_sf
Type: Homologous_superfamily
Description: Vps16 forms part of the Class C vacuolar protein sorting (Vps) complex. It is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.The C-terminal domain of Vps16 binds to Vps33 for integration into the HOPS complex [, ].
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DO Term
DOID:0060937 | dystonia 30
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Publication
11702788 | -
First Author: Rojo E
Year: 2001
Journal: Dev Cell
Title: VACUOLELESS1 is an essential gene required for vacuole formation and morphogenesis in Arabidopsis.
Volume: 1
Issue: 2
Pages: 303-10
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Publication
11422941 | -
First Author: Peterson MR
Year: 2001
Journal: Traffic
Title: The class C Vps complex functions at multiple stages of the vacuolar transport pathway.
Volume: 2
Issue: 7
Pages: 476-86
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Protein Domain
IPR006926 | Vps16_N
Type: Domain
Description: This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.
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Publication
23840694 | -
First Author: Baker RW
Year: 2013
Journal: PLoS One
Title: Crystal Structures of the Sec1/Munc18 (SM) Protein Vps33, Alone and Bound to the Homotypic Fusion and Vacuolar Protein Sorting (HOPS) Subunit Vps16*.
Volume: 8
Issue: 6
Pages: e67409
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Protein
Q8BGQ1
Organism: Mus musculus/domesticus
Length: 491  
Fragment?: false
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Protein
Q3UM95
Organism: Mus musculus/domesticus
Length: 491  
Fragment?: false
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Publication
30771382 | J:274351
First Author: Hong J
Year: 2019
Journal: Biochim Biophys Acta Mol Cell Res
Title: Lysosomal regulation of extracellular vesicle excretion during d-ribose-induced NLRP3 inflammasome activation in podocytes.
Volume: 1866
Issue: 5
Pages: 849-860
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MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

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