Type |
Details |
Score |
Gene |
Type: |
gene |
Organism: |
chicken |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
667
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
535
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
82
|
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Kim J |
Year: |
2010 |
Journal: |
Cell |
Title: |
The human PAF1 complex acts in chromatin transcription elongation both independently and cooperatively with SII/TFIIS. |
Volume: |
140 |
Issue: |
4 |
Pages: |
491-503 |
|
•
•
•
•
•
|
Publication |
First Author: |
Moniaux N |
Year: |
2006 |
Journal: |
Oncogene |
Title: |
The human homologue of the RNA polymerase II-associated factor 1 (hPaf1), localized on the 19q13 amplicon, is associated with tumorigenesis. |
Volume: |
25 |
Issue: |
23 |
Pages: |
3247-57 |
|
•
•
•
•
•
|
Publication |
First Author: |
Marazzi I |
Year: |
2012 |
Journal: |
Nature |
Title: |
Suppression of the antiviral response by an influenza histone mimic. |
Volume: |
483 |
Issue: |
7390 |
Pages: |
428-33 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhao L |
Year: |
2005 |
Journal: |
FASEB J |
Title: |
Expression of the Leo1-like domain of replicative senescence down-regulated Leo1-like (RDL) protein promotes senescence of 2BS fibroblasts. |
Volume: |
19 |
Issue: |
6 |
Pages: |
521-32 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mbogning J |
Year: |
2013 |
Journal: |
PLoS Genet |
Title: |
The PAF complex and Prf1/Rtf1 delineate distinct Cdk9-dependent pathways regulating transcription elongation in fission yeast. |
Volume: |
9 |
Issue: |
12 |
Pages: |
e1004029 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
In budding yeasts, Paf1 is part of the Paf1 complex, an RNA polymerase II-associated protein complex containing Paf1, Cdc73, Ctr9, Rtf1 and Leo1 []. Paf1 complex is involved in histone modifications, transcription elongation and other gene expression processes that include transcript site selection []. This entry also includes Paf1 homologues from animals and plants. Human Paf1, also known as PD2 (pancreatic differentiation 2), is associated with tumorigenesis []. Human Paf1 complex (Paf1C) consists of Paf1, Cdc73, Ctr9, Rtf1, Leo1 and Wdr61 (Ski8). As in yeast, the human Paf1C has a central role in co-transcriptional histone modifications []. Human Paf1 complex has a crucial role in the antiviral response []. Arabidopsis Paf1C related proteins such as VIP4 (Leo1), VIP5 (Rtf1), ELF7 (Paf1), ELF8 (Ctr9) and ATXR7 (Set1) are required for the induction of seed dormancy. They control both germination and flowering time []. |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
In budding yeasts, Leo1 is part of the Paf1 complex, an RNA polymerase II-associated protein complex containing Paf1, Cdc73, Ctr9, Rtf1 and Leo1. Paf1 complex is involved in histone modifications, transcription elongation and other gene expression processes that include transcript site selection []. This entry also includes Leo1 homologues from animals and plants. Human Leo1, also known as RDL, is a component of the human Paf1 complex (Paf1C), which consists of Paf1, Cdc73, Ctr9, Rtf1, Leo1 and Wdr61 (Ski8). As in yeast, the human Paf1C has a central role in co-transcriptional histone modifications []. Human Leo1 promotes senescence of 2BS fibroblasts [].Arabidopsis Paf1C related proteins such as VIP4 (Leo1), VIP5 (Rtf1), ELF7 (Paf1), ELF8 (Ctr9) and ATXR7 (Set1) are required for the induction of seed dormancy. They control both germination and flowering time []. |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
This entry includes budding yeast RNA polymerase-associated protein Ctr9 and its homologues from other yeasts, animals and plants. The homologue in fission yeast is known as tetratricopeptide repeat protein 1 (Tpr1) [].Budding yeast Ctr9 is part of the Paf1 complex, an RNA polymerase II-associated protein complex containing Paf1, Cdc73, Ctr9, Rtf1 and Leo1 []. Paf1 complex is involved in histone modifications, transcription elongation and other gene expression processes that include transcript site selection []. Human Paf1 complex (Paf1C) consists of Paf1, Cdc73, Ctr9, Rtf1, Leo1 and Wdr61 (Ski8). As in yeast, the human Paf1C has a central role in co-transcriptional histone modifications [].Arabidopsis Paf1C related proteins such as VIP4 (Leo1), VIP5 (Rtf1), ELF7 (Paf1), ELF8 (Ctr9) and ATXR7 (Set1) are required for the induction of seed dormancy. They control both germination and flowering time []. |
|
•
•
•
•
•
|
Publication |
First Author: |
Mueller CL |
Year: |
2002 |
Journal: |
Mol Cell Biol |
Title: |
Ctr9, Rtf1, and Leo1 are components of the Paf1/RNA polymerase II complex. |
Volume: |
22 |
Issue: |
7 |
Pages: |
1971-80 |
|
•
•
•
•
•
|
Publication |
First Author: |
Isom H |
Year: |
1991 |
Journal: |
Cancer Res |
Title: |
Workshop report from the Division of Research Grants, National Institutes of Health. The role of chromosome rearrangements, deletions, and point mutations in cancer--a Pathology B Study Section workshop. |
Volume: |
51 |
Issue: |
19 |
Pages: |
5440-4 |
|
•
•
•
•
•
|
Publication |
First Author: |
Liu Y |
Year: |
2011 |
Journal: |
PLoS One |
Title: |
Identification of the Arabidopsis REDUCED DORMANCY 2 gene uncovers a role for the polymerase associated factor 1 complex in seed dormancy. |
Volume: |
6 |
Issue: |
7 |
Pages: |
e22241 |
|
•
•
•
•
•
|
Publication |
First Author: |
Krogan NJ |
Year: |
2002 |
Journal: |
Mol Cell Biol |
Title: |
RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach. |
Volume: |
22 |
Issue: |
20 |
Pages: |
6979-92 |
|
•
•
•
•
•
|
Publication |
First Author: |
Park S |
Year: |
2010 |
Journal: |
Plant Physiol |
Title: |
PLANT HOMOLOGOUS TO PARAFIBROMIN is a component of the PAF1 complex and assists in regulating expression of genes within H3K27ME3-enriched chromatin. |
Volume: |
153 |
Issue: |
2 |
Pages: |
821-31 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yu X |
Year: |
2010 |
Journal: |
Plant Physiol |
Title: |
The Arabidopsis Paf1c complex component CDC73 participates in the modification of FLOWERING LOCUS C chromatin. |
Volume: |
153 |
Issue: |
3 |
Pages: |
1074-84 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
This entry includes Cdc73 from budding yeasts and its animal homologue, parafibromin. They are part of the Paf1 complex involved in histone modifications, transcription elongation and other gene expression processes that include transcript site selection [].In budding yeasts, Paf1 is an RNA polymerase II-associated protein complex containing Paf1, Cdc73, Ctr9, Rtf1 and Leo1. It is required for full expression of a subset of yeast genes, particularly those responsive to signals from the Pkc1/MAP kinase cascade. The complex appears to play an essential role in RNA elongation []. Human parafibromin is a tumour suppressor that may facilitate association of 3' mRNA processing factors with actively-transcribed chromatin. It is a component of the human Paf1 complex (Paf1C), which consists of Paf1, Cdc73, Ctr9, Rtf1, Leo1 and Wdr61 (Ski8). As in yeast, the human Paf1C has a central role in co-transcriptional histone modifications []. The Arabidopsis Cdc73 (also known as PLANT HOMOLOGOUS TO PARAFIBROMIN ,PHP) assists in regulating expression of genes within H3K27ME3-enriched chromatin []and participates in the modification of FLOWERING LOCUS C (FLC) chromatin []. |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
531
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1173
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
939
|
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
936
|
Fragment?: |
true |
|
•
•
•
•
•
|