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Search results 1 to 96 out of 96 for Xrn1

0.038s

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Hits by Pathway

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Hits by Strain

Type Details Score
Gene
54464 | XRN1
Type: gene
Organism: human
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Gene
733797 | xrn1
Type: gene
Organism: frog, western clawed
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Gene
300944 | Xrn1
Type: gene
Organism: rat
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Gene
477100 | XRN1
Type: gene
Organism: dog, domestic
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Gene
460744 | XRN1
Type: gene
Organism: chimpanzee
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Gene
540834 | XRN1
Type: gene
Organism: cattle
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Gene
424778 | XRN1
Type: gene
Organism: chicken
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Gene
394008 | xrn1
Type: gene
Organism: zebrafish
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Gene
714497 | XRN1
Type: gene
Organism: macaque, rhesus
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Protein Coding Gene
MGI:891964 | Xrn1
Type: protein_coding_gene
Organism: mouse, laboratory
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Publication
34646989 | J:342928
First Author: Takaoka S
Year: 2021
Journal: iScience
Title: Neuronal XRN1 is required for maintenance of whole-body metabolic homeostasis.
Volume: 24
Issue: 10
Pages: 103151
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Publication
29033321 | J:243742
First Author: Wojtas MN
Year: 2017
Journal: Mol Cell
Title: Regulation of m6A Transcripts by the 3'→5' RNA Helicase YTHDC2 Is Essential for a Successful Meiotic Program in the Mammalian Germline.
Volume: 68
Issue: 2
Pages: 374-387.e12
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Protein Coding Gene
MGP_CAROLIEiJ_G0032535 | -
Type: protein_coding_gene
Organism: Mus caroli
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Protein Coding Gene
MGP_129S1SvImJ_G0035140 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AJ_G0035121 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_AKRJ_G0035053 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_BALBcJ_G0035114 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C3HHeJ_G0034824 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGI_C57BL6J_891964 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_C57BL6NJ_G0035634 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CASTEiJ_G0034136 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_CBAJ_G0034792 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_DBA2J_G0034954 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_FVBNJ_G0034902 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_LPJ_G0035033 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NODShiLtJ_G0034941 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_NZOHlLtJ_G0035656 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PWKPhJ_G0033843 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_WSBEiJ_G0034256 | -
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGP_PahariEiJ_G0015404 | -
Type: protein_coding_gene
Organism: Mus pahari
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Protein Coding Gene
MGP_SPRETEiJ_G0033678 | -
Type: protein_coding_gene
Organism: Mus spretus
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Publication
9218715 | J:41259
First Author: Shobuike T
Year: 1997
Journal: Gene
Title: Cloning and characterization of mouse Dhm2 cDNA, a functional homolog of budding yeast SEP1.
Volume: 191
Issue: 2
Pages: 161-6
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Publication
9049243 | J:39219
First Author: Bashkirov VI
Year: 1997
Journal: J Cell Biol
Title: A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4 tetraplex substrates.
Volume: 136
Issue: 4
Pages: 761-73
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Publication
20011505 | J:155865
First Author: Aravin AA
Year: 2009
Journal: PLoS Genet
Title: Cytoplasmic compartmentalization of the fetal piRNA pathway in mice.
Volume: 5
Issue: 12
Pages: e1000764
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Publication
35305312 | J:328765
First Author: Li L
Year: 2022
Journal: Mol Cell
Title: The XRN1-regulated RNA helicase activity of YTHDC2 ensures mouse fertility independently of m6A recognition.
Volume: 82
Issue: 9
Pages: 1678-1690.e12
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Publication
25071210 | J:213939
First Author: Shukla S
Year: 2014
Journal: Proc Natl Acad Sci U S A
Title: Quality control of assembly-defective U1 snRNAs by decapping and 5'-to-3' exonucleolytic digestion.
Volume: 111
Issue: 32
Pages: E3277-86
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Publication
18625844 | J:139263
First Author: Zheng D
Year: 2008
Journal: J Cell Biol
Title: Deadenylation is prerequisite for P-body formation and mRNA decay in mammalian cells.
Volume: 182
Issue: 1
Pages: 89-101
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Publication
20133598 | J:157579
First Author: Suzuki A
Year: 2010
Journal: Proc Natl Acad Sci U S A
Title: NANOS2 interacts with the CCR4-NOT deadenylation complex and leads to suppression of specific RNAs.
Volume: 107
Issue: 8
Pages: 3594-9
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Publication
- | J:94790
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Mouse Synonym Curation
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Publication
12520002 | J:91812
First Author: Stryke D
Year: 2003
Journal: Nucleic Acids Res
Title: BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.
Volume: 31
Issue: 1
Pages: 278-81
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Publication
- | J:204812
     
First Author: International Mouse Strain Resource
Year: 2014
Journal: Database Download
Title: MGI download of germline transmission data for alleles from IMSR strain data
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Publication
18799693 | J:142754
First Author: Hansen GM
Year: 2008
Journal: Genome Res
Title: Large-scale gene trapping in C57BL/6N mouse embryonic stem cells.
Volume: 18
Issue: 10
Pages: 1670-9
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Publication
- | J:155856
       
First Author: The Gene Ontology Consortium
Year: 2014
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-rat orthologs
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Publication
- | J:78475
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Chromosome assignment of mouse genes using the Mouse Genome Sequencing Consortium (MGSC) assembly and the ENSEMBL Database
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Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
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Publication
14610273 | J:86696
First Author: Zambrowicz BP
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
Volume: 100
Issue: 24
Pages: 14109-14
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Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
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Publication
- | J:141210
     
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
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Publication
- | J:342587
       
First Author: AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators
Year: 2011
Title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
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Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
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Publication
- | J:164563
       
First Author: The Gene Ontology Consortium
Year: 2010
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
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Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
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Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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Publication
23142987 | -
First Author: Braun JE
Year: 2012
Journal: Nat Struct Mol Biol
Title: A direct interaction between DCP1 and XRN1 couples mRNA decapping to 5' exonucleolytic degradation.
Volume: 19
Issue: 12
Pages: 1324-31
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Publication
22570495 | -
First Author: Sinturel F
Year: 2012
Journal: Proc Natl Acad Sci U S A
Title: Activation of 5'-3' exoribonuclease Xrn1 by cofactor Dcs1 is essential for mitochondrial function in yeast.
Volume: 109
Issue: 21
Pages: 8264-9
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Protein Domain
IPR041412 | Xrn1_helical
Type: Domain
Description: This helical domain is part of the Xrn1 catalytic core []. Xrn1 is a cytoplasmic 5'-3' exonuclease that degrades decapped mRNAs. This domain can also be found in Xrn2 [].
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GO Term
GO:0180037 | rapid tRNA decay
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Protein Domain
IPR016494 | 5_3_exoribonuclease_1
Type: Family
Description: 5'-3'-exoribonucleases are enzymes that degrade RNA by removing terminal nucleotides from the 5' end. 5'-3'exoribonuclease type 1 (Xrn1, also known as kem1) occurs in animal and fungal lineages. In Saccharomyces cerevisiae, Xrn1 can be activated by Dcs1, a non-essential hydrolase that involved in mRNA decapping. The activation of Xrn1 by Dcs1 is important for respiration [].
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Protein Domain
IPR040486 | Xrn1_D3
Type: Domain
Description: This domain is found in 5' to 3' exoribonuclease 1 (XRN1) present in Kluyveromyces lactis. XRN1 is involved in transcription, RNA metabolism, and RNA interference. This domain, known as D3, is the third of four domains located far from the active site. These four domains may help to stabilize the N-terminal segment of Xrn1 for catalysis [].
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Publication
21362555 | -
First Author: Jinek M
Year: 2011
Journal: Mol Cell
Title: Coupled 5' nucleotide recognition and processivity in Xrn1-mediated mRNA decay.
Volume: 41
Issue: 5
Pages: 600-8
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Protein Domain
IPR040992 | XRN1_D1
Type: Domain
Description: This domain can be found in 5' to 3' exoribonuclease 1 (XRN1) which belong to a family of conserved enzymes in eukaryotes and have important functions in transcription, RNA metabolism, and RNA interference. Xrn1 in fungi and animals is primarily cytosolic and is involved in degradation of decapped mRNAs, nonsense mediated decay, microRNA decay and is essential for proper development. The Xrn1 homologue in Drosophila, known as Pacman, is required for male fertility []. This domain (D1) along with 3 other domains, make up a 510-residue segment following the conserved regions found in XRNs but they are only present in XRN1 and are absent in Rat1/XRN2. The amino acid sequences of these four domains contain an excess of basic residues, suggesting that these domains might help in binding the RNA substrate. Mutational studies carried out in D1 domain show that the mutant forms had dramatically reduced nuclease activity towards ssDNA substrate indicating that domain D1 is required for Xrn1 nuclease activity [].
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Protein Domain
IPR040587 | XRN1_DBM
Type: Domain
Description: This domain is found in the 5'-3' exonuclease (XRN1) present in Drosophila melanogaster. XRN1 degrades deadenylated mRNA that has recently been decapped by decapping enzyme 2 (DCP2). DCP2 associates with decapping activators DCP1 and EDC4. The direct interaction between DCP1 and XRN1 couples mRNA decapping to 5' exonucleolytic degradation. This domain is responsible for binding to DCP1. In particular, the helical C-terminal region of the domain contributes to the binding affinity and the specificity of the interaction [].
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Protein
P97789
Organism: Mus musculus/domesticus
Length: 1719  
Fragment?: false
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Protein
A0A087WQN7
Organism: Mus musculus/domesticus
Length: 1719  
Fragment?: false
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Protein
A0A087WNV6
Organism: Mus musculus/domesticus
Length: 969  
Fragment?: false
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Protein
F8VQ87
Organism: Mus musculus/domesticus
Length: 1723  
Fragment?: false
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Publication
21297639 | -
First Author: Chang JH
Year: 2011
Journal: Nat Struct Mol Biol
Title: Structural and biochemical studies of the 5'→3' exoribonuclease Xrn1.
Volume: 18
Issue: 3
Pages: 270-6
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Protein Domain
IPR041106 | XRN1_D2_D3
Type: Domain
Description: This domain can be found in 5' to 3' exoribonuclease 1 (XRN1) which belong to a family of conserved enzymes in eukaryotes and have important functions in transcription, RNA metabolism, and RNA interference. Xrn1 in fungi and animals is primarily cytosolic, involved in degradation of decapped mRNAs, nonsense mediated decay, microRNA decay and is essential for proper development. The Xrn1 homologue in Drosophila, known as Pacman, is required for male fertility []. This entry relates to domain 2 and 3 combined which can be found in the 510-residue C-terminal extension found in XRN1 and not in XRN2/Rat1. Domain D2 is formed by two stretches of Xrn1, residues 915-960 and 1134-1151. The presence of domain (D3) is suggested based on structure. This domain is formed by residues 979-1109, in the insert of domain D2. It is suggested that domains D2-D4 may help maintain domain D1 in the correct conformation, thereby indirectly stabilising the conformation of the N-terminal segment [].
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Protein Domain
IPR041385 | SH3_12
Type: Domain
Description: This is the C-terminal SH3-like domain which can be found in the exoribonuclease Xrn1. Xrn1 is a 175kDa processive exoribonuclease that is conserved from yeast to mammals which targets cytoplasmic RNA substrates marked by a 5' monophosphate for processive 5'-to-3' degradation. The Sh3-like domain in Xrn1 lacks the canonical SH3 residues normally involved in binding proline-rich peptide motifs and instead engages in non-canonical interactions with the catalytic domain. Additionally it is essential in maintaining the structural integrity of Xrn1, since partial truncation of thisdomain in yeast Xrn1 yields an inactive protein. There is a long loop projecting from the SH3-like domain that contacts the PAZ/Tudor domain, occluding the functional surface that binds RNA or peptide motifs containing methylated arginines, respectively, in canonical PAZ and Tudor domain [].
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Protein
Q9DBR1
Organism: Mus musculus/domesticus
Length: 951  
Fragment?: false
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Publication
20188675 | -
First Author: Jimeno-González S
Year: 2010
Journal: Mol Cell
Title: The yeast 5'-3' exonuclease Rat1p functions during transcription elongation by RNA polymerase II.
Volume: 37
Issue: 4
Pages: 580-7
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Publication
23503588 | -
First Author: Malecki M
Year: 2013
Journal: EMBO J
Title: The exoribonuclease Dis3L2 defines a novel eukaryotic RNA degradation pathway.
Volume: 32
Issue: 13
Pages: 1842-54
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Publication
23756462 | -
First Author: Lubas M
Year: 2013
Journal: EMBO J
Title: Exonuclease hDIS3L2 specifies an exosome-independent 3'-5' degradation pathway of human cytoplasmic mRNA.
Volume: 32
Issue: 13
Pages: 1855-68
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Publication
20798041 | -
First Author: Zhang W
Year: 2010
Journal: Proc Natl Acad Sci U S A
Title: Conserved RNaseII domain protein functions in cytoplasmic mRNA decay and suppresses Arabidopsis decapping mutant phenotypes.
Volume: 107
Issue: 36
Pages: 15981-5
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Protein Domain
IPR028591 | DIS3L2
Type: Family
Description: DIS3-like exonuclease 2 (DIS3L2) is a 3'-5'-exoribonuclease that specifically recognises RNAs polyuridylated at their 3' end and mediates their degradation. It plays an important role in the mRNA degradation pathway alternative to degradation by Xrn1 and the exosome [, ]. This entry also includes DIS3L2 plant homologue, SUPPRESSOR OF VARICOSE (SOV) (At1g77680), which functions in cytoplasmic mRNA decay and suppresses Arabidopsis decapping mutant phenotypes [].
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Protein
A0A087WQ18
Organism: Mus musculus/domesticus
Length: 40  
Fragment?: true
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Publication
18486559 | -
First Author: Gregory BD
Year: 2008
Journal: Dev Cell
Title: A link between RNA metabolism and silencing affecting Arabidopsis development.
Volume: 14
Issue: 6
Pages: 854-66
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Protein Domain
IPR027073 | 5_3_exoribonuclease
Type: Family
Description: This entry includes 5'-3'exoribonuclease type 1 and type 2. Putative viral exonucleases 059L and 012L, plant Xrn3 and Xrn4 also belong to this family. 5'-3'-exoribonucleases are enzymes that degrade RNA by removing terminal nucleotides from the 5' end. An exosome and a 5'-3'-exoribonuclease are important in the degradation of very unstable transcripts []. 5'-3'exoribonuclease type 1 (Xrn1, also known as kem1) occurs in animal and fungal lineages. In Saccharomyces cerevisiae, Xrn1 can be activated by Dcs1, a non-essential hydrolase that involved in mRNA decapping. The activation of Xrn1 by Dcs1 is important for respiration [].5'-3' exoribonuclease type 2 (Xrn2, also known as Rat1) occurs in animal, plant and fungal lineages. In Saccharomyces cerevisiae, Rat1 serves to terminateRNA polymerase II (RNAPII) molecules engaged in the production of uncapped RNA []. The concomitant loss of Xrn4 and ABH1/CBP80, a subunit of the mRNA cap binding complex, results in Arabidopsis plants manifesting myriad developmental defects [], suggesting that this enzyme is not only important for RNA processing.
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Publication
18481995 | -
First Author: Clayton C
Year: 2008
Journal: Biochem Soc Trans
Title: Control of mRNA degradation in trypanosomes.
Volume: 36
Issue: Pt 3
Pages: 520-1
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Publication
30180947 | J:279925
First Author: Yun JS
Year: 2018
Journal: Biochem Biophys Res Commun
Title: Molecular mechanism for the inhibition of DXO by adenosine 3',5'-bisphosphate.
Volume: 504
Issue: 1
Pages: 89-95
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Publication
10349620 | J:52219
First Author: Till DD
Year: 1998
Journal: Mech Dev
Title: Identification and developmental expression of a 5'-3' exoribonuclease from Drosophila melanogaster.
Volume: 79
Issue: 1-2
Pages: 51-5
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Publication
10454540 | J:56949
First Author: Solinger JA
Year: 1999
Journal: Mol Cell Biol
Title: Active-site mutations in the Xrn1p exoribonuclease of Saccharomyces cerevisiae reveal a specific role in meiosis.
Volume: 19
Issue: 9
Pages: 5930-42
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Publication
19091970 | J:143522
First Author: Cougot N
Year: 2008
Journal: J Neurosci
Title: Dendrites of mammalian neurons contain specialized P-body-like structures that respond to neuronal activation.
Volume: 28
Issue: 51
Pages: 13793-804
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Publication
32829531 | J:304353
First Author: Lai HC
Year: 2021
Journal: J Leukoc Biol
Title: Regulation of RNA degradation pathways during the lipopolysaccharide response in Macrophages.
Volume: 109
Issue: 3
Pages: 593-603
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Protein
Q8CI75
Organism: Mus musculus/domesticus
Length: 870  
Fragment?: false
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MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

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