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Publication : On "genomenclature": a comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA".

First Author  Brosius J Year  1992
Journal  Proc Natl Acad Sci U S A Volume  89
Issue  22 Pages  10706-10
PubMed ID  1279691 Mgi Jnum  J:3266
Mgi Id  MGI:51779 Doi  10.1073/pnas.89.22.10706
Citation  Brosius J, et al. (1992) On genomenclature: a comprehensive (and respectful) taxonomy for pseudogenes and other junk DNA. Proc Natl Acad Sci U S A 89(22):10706-10
abstractText  Genomic nomenclature has not kept pace with the levels and depth of analyzing and understanding genomic structure, function, and evolution. We wish to propose a general terminology that might aid the integrated study of evolution and molecular biology. Here we designate as a nuon any stretch of nucleic acid sequence that may be identifiable by any criterion. We show how such a general term will facilitate contemplation of the structural and functional contributions of such elements to the genome in its past, current, or future state. We focus in this paper on pseudogenes and dispersed repetitive elements, since their current names reflect the prevalent view that they constitute dispensable genomic noise (trash), rather than a vast repertoire of sequences with the capacity to shape an organism during evolution. This potential to contribute sequences for future use is reflected in the suggested terms potonuons or potogenes. If such a potonuon has been coopted into a variant or novel function, an evolutionary process termed exaptation, we employ the term xaptonuon. If a potonuon remains without function (nonaptive nuon), it is a nonaptation and we term it naptonuon. A number of examples for potonuons and xaptonuons are given.
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