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Protein Coding Gene : Col11a1 collagen, type XI, alpha 1

Primary Identifier  MGI:88446 Organism  mouse, laboratory
Chromosome  3 NCBI Gene Number  12814
Mgi Type  protein coding gene
description  FUNCTION: Automated description from the Alliance of Genome Resources (Release 7.1.0)

Predicted to enable heparan sulfate binding activity and heparin binding activity. Predicted to be an extracellular matrix structural constituent conferring tensile strength. Acts upstream of or within several processes, including collagen fibril organization; skeletal system development; and ventricular cardiac muscle tissue morphogenesis. Located in extracellular matrix. Part of collagen trimer. Is expressed in several structures, including alimentary system; heart; limb; musculoskeletal system; and respiratory system. Used to study Stickler syndrome and osteoarthritis. Human ortholog(s) of this gene implicated in Marshall syndrome; Stickler syndrome 2; autosomal dominant nonsyndromic deafness; and fibrochondrogenesis 1. Orthologous to human COL11A1 (collagen type XI alpha 1 chain).
PHENOTYPE: Homozygous mutation of this gene results in perinatal lethality by asphyxia. Mutants animals display weak tracheal cartilage, short snout, short mandible, cleft palate, short limbs, and externally rotated distal portion of the hindlimbs. [provided by MGI curators]
  • synonyms:
  • C530001D20Rik,
  • collagen, type XI, alpha 1,
  • RIKEN cDNA C530001D20 gene,
  • MGD-MRK-1972,
  • cho,
  • Col11a1,
  • chondrodysplasia,
  • MGD-MRK-2053,
  • MGI:1924905

Features --> Cross References

Genome

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0 Canonical

0 CDSs

0 Exons

0 Genomic Clusters

2 Involved In Mutations

0 Strain

0 Transcripts

0 Transgenic Expressors

0 UTRs

Canonical gene --> CDSs in specific strains.

Canonical gene --> Exons in specific strains

Canonical gene --> Strain-specific IDs, biotypes, and locations

Canonical gene --> Transcripts in specific strains.

Features --> Overlapping features

Proteins

Gene --> Proteins

Function

Mouse features --> Functions (GO terms)

Homology

Genes --> Homologs

Interactions

13 Pathways

0 Targeted By

Gene --> Protein-Protein Interactions

Expression

Gene --> Expression annotations

Phenotype

Genes/Features --> Phenotypes (MP terms)

Disease

Mouse features --> Human diseases

Literature

Mouse features --> Publications

 

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0 Driver For