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Publication : Structural and mechanistic basis of mammalian Nudt12 RNA deNADding.

First Author  Grudzien-Nogalska E Year  2019
Journal  Nat Chem Biol Volume  15
Issue  6 Pages  575-582
PubMed ID  31101919 Mgi Jnum  J:280091
Mgi Id  MGI:6368680 Doi  10.1038/s41589-019-0293-7
Citation  Grudzien-Nogalska E, et al. (2019) Structural and mechanistic basis of mammalian Nudt12 RNA deNADding. Nat Chem Biol 15(6):575-582
abstractText  We recently demonstrated that mammalian cells harbor nicotinamide adenine dinucleotide (NAD)-capped messenger RNAs that are hydrolyzed by the DXO deNADding enzyme. Here, we report that the Nudix protein Nudt12 is a second mammalian deNADding enzyme structurally and mechanistically distinct from DXO and targeting different RNAs. The crystal structure of mouse Nudt12 in complex with the deNADding product AMP and three Mg(2+) ions at 1.6 A resolution provides insights into the molecular basis of the deNADding activity in the NAD pyrophosphate. Disruption of the Nudt12 gene stabilizes transfected NAD-capped RNA in cells, and its endogenous NAD-capped mRNA targets are enriched in those encoding proteins involved in cellular energetics. Furthermore, exposure of cells to nutrient or environmental stress manifests changes in NAD-capped RNA levels that are selectively responsive to Nudt12 or DXO, respectively, indicating an association of deNADding to cellular metabolism.
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