Type |
Details |
Score |
Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
Adams DJ |
Year: |
2024 |
Journal: |
Nature |
Title: |
Genetic determinants of micronucleus formation in vivo. |
Volume: |
627 |
Issue: |
8002 |
Pages: |
130-136 |
|
•
•
•
•
•
|
Publication |
First Author: |
MGD Nomenclature Committee |
Year: |
1995 |
|
Title: |
Nomenclature Committee Use |
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•
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•
•
•
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Publication |
First Author: |
Zambrowicz BP |
Year: |
2003 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. |
Volume: |
100 |
Issue: |
24 |
Pages: |
14109-14 |
|
•
•
•
•
•
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Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
|
Title: |
GemPharmatech Website. |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI) |
Year: |
2008 |
Journal: |
Database Download |
Title: |
Mouse Gene Trap Data Load from dbGSS |
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•
•
•
•
•
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Publication |
First Author: |
Cyagen Biosciences Inc. |
Year: |
2022 |
|
Title: |
Cyagen Biosciences Website. |
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•
•
•
•
•
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Publication |
First Author: |
AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators |
Year: |
2011 |
|
Title: |
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity |
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•
•
•
•
•
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Publication |
First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
Year: |
2004 |
Journal: |
Database Release |
Title: |
Mouse T31 Radiation Hybrid Data Load |
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|
•
•
•
•
•
|
Publication |
First Author: |
Okazaki Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
563-73 |
|
•
•
•
•
•
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Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
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•
•
•
•
•
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Publication |
First Author: |
Diez-Roux G |
Year: |
2011 |
Journal: |
PLoS Biol |
Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Volume: |
9 |
Issue: |
1 |
Pages: |
e1000582 |
|
•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
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•
•
•
•
•
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Publication |
First Author: |
MGI Genome Annotation Group and UniGene Staff |
Year: |
2015 |
Journal: |
Database Download |
Title: |
MGI-UniGene Interconnection Effort |
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•
•
•
•
•
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Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
|
Title: |
Annotation inferences using phylogenetic trees |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
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|
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•
•
•
•
•
|
Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
|
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•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
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•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
|
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•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
|
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•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
|
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|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
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|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
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•
•
•
•
•
|
DO Term |
|
•
•
•
•
•
|
Publication |
First Author: |
Bayarsaihan D |
Year: |
2002 |
Journal: |
Genomics |
Title: |
Genomic organization of the genes Gtf2ird1, Gtf2i, and Ncf1 at the mouse chromosome 5 region syntenic to the human chromosome 7q11.23 Williams syndrome critical region. |
Volume: |
79 |
Issue: |
1 |
Pages: |
137-43 |
|
•
•
•
•
•
|
Allele |
Name: |
neutrophil cytosolic factor 1; endonuclease-mediated mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Conditional ready, No functional change |
|
•
•
•
•
•
|
Allele |
Name: |
neutrophil cytosolic factor 1; targeted mutation 1, University of Turku, Department of Physiology |
Allele Type: |
Targeted |
Attribute String: |
Null/knockout |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
This entry represents the polybasic or autoinhibitory region (PBR/AIR, an arginine/lysine rich region) found after the second SH3 domain in neutrophil cytosol factor 1 (NCF1/p47phox) []. NCF1 is one of the cytosolic regulatory components of NADPH oxidase and consists of a PX domain at the N-terminal, two tandem SH3 domains, a PBR/AIR and a proline-rich region at the C-terminal. In the resting state, the SH3 domains of NCF1 are masked by an intramolecular interaction with the PBR/AIR, which maintains the enzyme in an inactive form []. |
|
•
•
•
•
•
|
Publication |
First Author: |
Ogura K |
Year: |
2006 |
Journal: |
J Biol Chem |
Title: |
NMR solution structure of the tandem Src homology 3 domains of p47phox complexed with a p22phox-derived proline-rich peptide. |
Volume: |
281 |
Issue: |
6 |
Pages: |
3660-8 |
|
•
•
•
•
•
|
Allele |
Name: |
neutrophil cytosolic factor 1; mutation 1, Jackson |
Allele Type: |
Spontaneous |
|
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
|
•
•
•
•
•
|
Publication |
First Author: |
Kami K |
Year: |
2002 |
Journal: |
EMBO J |
Title: |
Diverse recognition of non-PxxP peptide ligands by the SH3 domains from p67(phox), Grb2 and Pex13p. |
Volume: |
21 |
Issue: |
16 |
Pages: |
4268-76 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
NCF1 (also known as NADPH oxidase subunit p47Phox) is one of the cytosolic regulatory components of NADPH oxidase and consists of a PX domain at the N-terminal, two tandem SH3 domains, a polybasic or autoinhibitory region (PBR/AIR, an arginine/lysine rich region) and a proline-rich region at the C-terminal. In the resting state, the SH3 domains of NCF1 are masked by an intramolecular interaction with the PBR/AIR, which maintains the enzyme in an inactive form []. This entry represents the C-terminal domain which contains conserved PxxP motifs that allow binding to SH3 domains, with subsequent activation of the NADPH oxidase, and generation of superoxide, which plays a crucial role in host defence against microbial infection []. |
|
•
•
•
•
•
|
Strain |
Attribute String: |
mutant strain, coisogenic, spontaneous mutation |
|
•
•
•
•
•
|
Strain |
Attribute String: |
spontaneous mutation, mutant strain, major histocompatibility congenic, congenic |
|
•
•
•
•
•
|
Strain |
Attribute String: |
congenic, mutant strain, spontaneous mutation |
|
•
•
•
•
•
|
Strain |
Attribute String: |
major histocompatibility congenic, congenic, mutant strain, spontaneous mutation |
|
•
•
•
•
•
|
Strain |
Attribute String: |
congenic, mutant strain, spontaneous mutation, major histocompatibility congenic |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Ncf1/Ncf1 |
Background: |
B6.Cg-Dock7 +/+ Lepr/J |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
H2/? Ncf1/Ncf1 |
Background: |
B6.Cg-Ncf1 H2 |
Zygosity: |
cx |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Ncf1/Ncf1 |
Background: |
involves: C57BL/6 |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Ncf1/Ncf1 |
Background: |
B6(Cg)-Ncf1/J |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
H2/? Ncf1/Ncf1 |
Background: |
B10.Cg-Ncf1 H2/Rhd |
Zygosity: |
cx |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Groemping Y |
Year: |
2003 |
Journal: |
Cell |
Title: |
Molecular basis of phosphorylation-induced activation of the NADPH oxidase. |
Volume: |
113 |
Issue: |
3 |
Pages: |
343-55 |
|
•
•
•
•
•
|
Publication |
First Author: |
Flaherty JP |
Year: |
2010 |
Journal: |
Genesis |
Title: |
Generation of a conditional null allele of NADPH oxidase activator 1 (NOXA1). |
Volume: |
48 |
Issue: |
9 |
Pages: |
568-75 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shahin WS |
Year: |
2023 |
Journal: |
Nat Commun |
Title: |
Redox-dependent Igfbp2 signaling controls Brca1 DNA damage response to govern neural stem cell fate. |
Volume: |
14 |
Issue: |
1 |
Pages: |
444 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
NADPH oxidase is a multisubunit complex that assembles during phagocytosis to generate reactive oxygen species. NCF2 (p67-phox), NCF1 (p47-phox) are required for activation of the phagocyte NADPH oxidase. The activators p67-phox and p47-phox form a ternary complex together with adaptor protein p40-phox, which participates in activation of the phagocyte oxidase by regulating membrane recruitment of p67-phox and p47-phox [, ].A PB1 domain is present in p67-phox. p40-phox associates with p67-phox via binding of the p40-phox PC motif to the p67-phox PB1 domain [].PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions []. The p67-phox proteins contain a type II PB1 domain. |
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•
•
•
•
•
|
Publication |
First Author: |
Kyrychenko S |
Year: |
2015 |
Journal: |
Cardiovasc Res |
Title: |
Pivotal role of miR-448 in the development of ROS-induced cardiomyopathy. |
Volume: |
108 |
Issue: |
3 |
Pages: |
324-34 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kozel BA |
Year: |
2011 |
Journal: |
J Biol Chem |
Title: |
Genetic modifiers of cardiovascular phenotype caused by elastin haploinsufficiency act by extrinsic noncomplementation. |
Volume: |
286 |
Issue: |
52 |
Pages: |
44926-36 |
|
•
•
•
•
•
|
Publication |
First Author: |
Pizzolla A |
Year: |
2011 |
Journal: |
Eur J Immunol |
Title: |
CD68-expressing cells can prime T cells and initiate autoimmune arthritis in the absence of reactive oxygen species. |
Volume: |
41 |
Issue: |
2 |
Pages: |
403-12 |
|
•
•
•
•
•
|
Publication |
First Author: |
James J |
Year: |
2022 |
Journal: |
Elife |
Title: |
Redox regulation of PTPN22 affects the severity of T-cell-dependent autoimmune inflammation. |
Volume: |
11 |
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Gelderman KA |
Year: |
2007 |
Journal: |
J Clin Invest |
Title: |
Macrophages suppress T cell responses and arthritis development in mice by producing reactive oxygen species. |
Volume: |
117 |
Issue: |
10 |
Pages: |
3020-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Li L |
Year: |
2024 |
Journal: |
Nat Commun |
Title: |
NCF4 attenuates colorectal cancer progression by modulating inflammasome activation and immune surveillance. |
Volume: |
15 |
Issue: |
1 |
Pages: |
5170 |
|
•
•
•
•
•
|
Publication |
First Author: |
Trocme C |
Year: |
2015 |
Journal: |
J Pathol |
Title: |
Macrophage-specific NOX2 contributes to the development of lung emphysema through modulation of SIRT1/MMP-9 pathways. |
Volume: |
235 |
Issue: |
1 |
Pages: |
65-78 |
|
•
•
•
•
•
|
Publication |
First Author: |
Greve HJ |
Year: |
2020 |
Journal: |
J Neuroinflammation |
Title: |
Diesel exhaust impairs TREM2 to dysregulate neuroinflammation. |
Volume: |
17 |
Issue: |
1 |
Pages: |
351 |
|
•
•
•
•
•
|
Publication |
First Author: |
Martin LJ |
Year: |
2024 |
Journal: |
Int J Mol Sci |
Title: |
Nuclear Localization of Human SOD1 in Motor Neurons in Mouse Model and Patient Amyotrophic Lateral Sclerosis: Possible Links to Cholinergic Phenotype, NADPH Oxidase, Oxidative Stress, and DNA Damage. |
Volume: |
25 |
Issue: |
16 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Khaw YM |
Year: |
2020 |
Journal: |
J Neuroinflammation |
Title: |
Neutrophil-selective deletion of Cxcr2 protects against CNS neurodegeneration in a mouse model of multiple sclerosis. |
Volume: |
17 |
Issue: |
1 |
Pages: |
49 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
390
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
404
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
404
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
390
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
351
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
390
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Yoshida L |
Year: |
2002 |
Journal: |
Biochem Biophys Res Commun |
Title: |
Expression of a p67(phox) homolog in Caco-2 cells giving O(2)(-)-reconstituting ability to cytochrome b(558) together with recombinant p47(phox). |
Volume: |
296 |
Issue: |
5 |
Pages: |
1322-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kuribayashi F |
Year: |
2016 |
Journal: |
EMBO J |
Title: |
The adaptor protein p40phox as a positive regulator of the superoxide-producing phagocyte oxidase. |
Volume: |
35 |
Issue: |
3 |
Pages: |
369-70 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
377
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Sumimoto H |
Year: |
2007 |
Journal: |
Sci STKE |
Title: |
Structure and function of the PB1 domain, a protein interaction module conserved in animals, fungi, amoebas, and plants. |
Volume: |
2007 |
Issue: |
401 |
Pages: |
re6 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
525
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
525
 |
Fragment?: |
false |
|
•
•
•
•
•
|