|  Help  |  About  |  Contact Us

Search our database by keyword

- or -

Examples

  • Search this entire website. Enter identifiers, names or keywords for genes, diseases, strains, ontology terms, etc. (e.g. Pax6, Parkinson, ataxia)
  • Use OR to search for either of two terms (e.g. OR mus) or quotation marks to search for phrases (e.g. "dna binding").
  • Boolean search syntax is supported: e.g. Balb* for partial matches or mus AND NOT embryo to exclude a term

Search results 1 to 79 out of 79 for Upf1

Category restricted to Publication (x)

0.03s

Categories

Category: Publication
« show all
Type Details Score
Publication
23766421 | J:204558
First Author: Hurt JA
Year: 2013
Journal: Genome Res
Title: Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay.
Volume: 23
Issue: 10
Pages: 1636-50
•
•
•
•
•
Publication
32124941 | J:298478
First Author: Yaojia Cheng YX
Year: 2020
Journal: Int J Mol Med
Title: Aberrant expression of the UPF1 RNA surveillance gene disturbs keratinocyte homeostasis by stabilizing AREG.
Volume: 45
Issue: 4
Pages: 1163-1175
•
•
•
•
•
Publication
11152657 | J:67076
First Author: Medghalchi SM
Year: 2001
Journal: Hum Mol Genet
Title: Rent1, a trans-effector of nonsense-mediated mRNA decay, is essential for mammalian embryonic viability.
Volume: 10
Issue: 2
Pages: 99-105
•
•
•
•
•
Publication
- | J:68863
   
First Author: Selg M
Year: 2001
Journal: GenBank Submission
Title: Mus musculus nonsense mRNA reducing factor 1 NORF1 mRNA, complete cds
Pages: AF182947
•
•
•
•
•
Publication
21670277 | J:173551
First Author: Frischmeyer-Guerrerio PA
Year: 2011
Journal: Proc Natl Acad Sci U S A
Title: Perturbation of thymocyte development in nonsense-mediated decay (NMD)-deficient mice.
Volume: 108
Issue: 26
Pages: 10638-43
•
•
•
•
•
Publication
27149095 | J:232557
First Author: Fanourgakis G
Year: 2016
Journal: PLoS Genet
Title: Chromatoid Body Protein TDRD6 Supports Long 3' UTR Triggered Nonsense Mediated mRNA Decay.
Volume: 12
Issue: 5
Pages: e1005857
•
•
•
•
•
Publication
17000771 | J:117588
First Author: Banihashemi L
Year: 2006
Journal: Mol Cell Biol
Title: Upf1/Upf2 regulation of 3' untranslated region splice variants of AUF1 links nonsense-mediated and A+U-rich element-mediated mRNA decay.
Volume: 26
Issue: 23
Pages: 8743-54
•
•
•
•
•
Publication
8855285 | J:35791
First Author: Perlick HA
Year: 1996
Journal: Proc Natl Acad Sci U S A
Title: Mammalian orthologues of a yeast regulator of nonsense transcript stability.
Volume: 93
Issue: 20
Pages: 10928-32
•
•
•
•
•
Publication
22503102 | J:188025
First Author: Cho H
Year: 2012
Journal: Mol Cell
Title: Staufen1-mediated mRNA decay functions in adipogenesis.
Volume: 46
Issue: 4
Pages: 495-506
•
•
•
•
•
Publication
23202588 | J:247390
First Author: Hoefig KP
Year: 2013
Journal: Nat Struct Mol Biol
Title: Eri1 degrades the stem-loop of oligouridylated histone mRNAs to induce replication-dependent decay.
Volume: 20
Issue: 1
Pages: 73-81
•
•
•
•
•
Publication
29581509 | J:281208
First Author: Rehfeld F
Year: 2018
Journal: Nat Commun
Title: The RNA-binding protein ARPP21 controls dendritic branching by functionally opposing the miRNA it hosts.
Volume: 9
Issue: 1
Pages: 1235
•
•
•
•
•
Publication
31276534 | J:278323
First Author: Beauchamp MC
Year: 2019
Journal: PLoS One
Title: Loss of function mutation of Eftud2, the gene responsible for mandibulofacial dysostosis with microcephaly (MFDM), leads to pre-implantation arrest in mouse.
Volume: 14
Issue: 7
Pages: e0219280
•
•
•
•
•
Publication
34784943 | J:317365
First Author: Kurosaki T
Year: 2021
Journal: Genome Biol
Title: NMD abnormalities during brain development in the Fmr1-knockout mouse model of fragile X syndrome.
Volume: 22
Issue: 1
Pages: 317
•
•
•
•
•
Publication
25770585 | J:222980
First Author: Li T
Year: 2015
Journal: EMBO J
Title: Smg6/Est1 licenses embryonic stem cell differentiation via nonsense-mediated mRNA decay.
Volume: 34
Issue: 12
Pages: 1630-47
•
•
•
•
•
Publication
16789828 | J:116443
First Author: Ciaudo C
Year: 2006
Journal: PLoS Genet
Title: Nuclear mRNA degradation pathway(s) are implicated in Xist regulation and X chromosome inactivation.
Volume: 2
Issue: 6
Pages: e94
•
•
•
•
•
Publication
23821644 | J:202263
First Author: Jolly LA
Year: 2013
Journal: Hum Mol Genet
Title: The UPF3B gene, implicated in intellectual disability, autism, ADHD and childhood onset schizophrenia regulates neural progenitor cell behaviour and neuronal outgrowth.
Volume: 22
Issue: 23
Pages: 4673-87
•
•
•
•
•
Publication
36001654 | J:335610
First Author: Qian B
Year: 2022
Journal: Sci Adv
Title: RNA binding protein RBM46 regulates mitotic-to-meiotic transition in spermatogenesis.
Volume: 8
Issue: 34
Pages: eabq2945
•
•
•
•
•
Publication
11353399 | J:69829
First Author: Clarke D
Year: 2001
Journal: Mamm Genome
Title: Comparative analysis of human 19p12-13 region in Fugu and mouse.
Volume: 12
Issue: 6
Pages: 478-83
•
•
•
•
•
Publication
- | J:326541
       
First Author: Cyagen Biosciences Inc.
Year: 2022
Title: Cyagen Biosciences Website.
•
•
•
•
•
Publication
12904583 | J:85162
First Author: Hansen J
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome.
Volume: 100
Issue: 17
Pages: 9918-22
•
•
•
•
•
Publication
- | J:84900
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Journal: Database Download
Title: Integrating Computational Gene Models into the Mouse Genome Informatics (MGI) Database
•
•
•
•
•
Publication
12520002 | J:91812
First Author: Stryke D
Year: 2003
Journal: Nucleic Acids Res
Title: BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.
Volume: 31
Issue: 1
Pages: 278-81
•
•
•
•
•
Publication
- | J:72247
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2001
Title: Gene Ontology Annotation by the MGI Curatorial Staff
•
•
•
•
•
Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
•
•
•
•
•
Publication
- | J:342604
       
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
•
•
•
•
•
Publication
- | J:342605
       
First Author: GOA curators
Year: 2016
Title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
•
•
•
•
•
Publication
- | J:85000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Title: MGI Sequence Curation Reference
•
•
•
•
•
Publication
- | J:60000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2000
Title: Gene Ontology Annotation by electronic association of SwissProt Keywords with GO terms
•
•
•
•
•
Publication
- | J:342587
       
First Author: AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators
Year: 2011
Title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
•
•
•
•
•
Publication
- | J:141210
     
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
•
•
•
•
•
Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
•
•
•
•
•
Publication
- | J:23000
       
First Author: MGD Nomenclature Committee
Year: 1995
Title: Nomenclature Committee Use
•
•
•
•
•
Publication
- | J:68900
     
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
•
•
•
•
•
Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
•
•
•
•
•
Publication
- | J:164563
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Title: Human to Mouse ISO GO annotation transfer
•
•
•
•
•
Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
•
•
•
•
•
Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
•
•
•
•
•
Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
•
•
•
•
•
Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
•
•
•
•
•
Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
•
•
•
•
•
Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
•
•
•
•
•
Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
•
•
•
•
•
Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
•
•
•
•
•
Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
•
•
•
•
•
Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
•
•
•
•
•
Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
•
•
•
•
•
Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
•
•
•
•
•
Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
•
•
•
•
•
Publication
16186820 | J:319990
First Author: Hosoda N
Year: 2005
Journal: Nat Struct Mol Biol
Title: CBP80 promotes interaction of Upf1 with Upf2 during nonsense-mediated mRNA decay in mammalian cells.
Volume: 12
Issue: 10
Pages: 893-901
•
•
•
•
•
Publication
9064659 | J:38491
First Author: Applequist SE
Year: 1997
Journal: Nucleic Acids Res
Title: Cloning and characterization of HUPF1, a human homolog of the Saccharomyces cerevisiae nonsense mRNA-reducing UPF1 protein.
Volume: 25
Issue: 4
Pages: 814-21
•
•
•
•
•
Publication
19556969 | -
First Author: Clerici M
Year: 2009
Journal: EMBO J
Title: Unusual bipartite mode of interaction between the nonsense-mediated decay factors, UPF1 and UPF2.
Volume: 28
Issue: 15
Pages: 2293-306
•
•
•
•
•
Publication
21419344 | -
First Author: Chakrabarti S
Year: 2011
Journal: Mol Cell
Title: Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2.
Volume: 41
Issue: 6
Pages: 693-703
•
•
•
•
•
Publication
23263869 | J:192610
First Author: Park E
Year: 2013
Journal: Proc Natl Acad Sci U S A
Title: Staufen2 functions in Staufen1-mediated mRNA decay by binding to itself and its paralog and promoting UPF1 helicase but not ATPase activity.
Volume: 110
Issue: 2
Pages: 405-12
•
•
•
•
•
Publication
18066079 | -
First Author: Chamieh H
Year: 2008
Journal: Nat Struct Mol Biol
Title: NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity.
Volume: 15
Issue: 1
Pages: 85-93
•
•
•
•
•
Publication
33404013 | J:300815
   
First Author: Polaski JT
Year: 2021
Journal: Elife
Title: The origins and consequences of UPF1 variants in pancreatic adenosquamous carcinoma.
Volume: 10
•
•
•
•
•
Publication
29236296 | -
 
First Author: M Plank TD
Year: 2018
Journal: Bioessays
Title: RNA Decay Factor UPF1 Promotes Protein Decay: A Hidden Talent.
Volume: 40
Issue: 1
•
•
•
•
•
Publication
25013172 | -
First Author: Chakrabarti S
Year: 2014
Journal: Nucleic Acids Res
Title: Phospho-dependent and phospho-independent interactions of the helicase UPF1 with the NMD factors SMG5-SMG7 and SMG6.
Volume: 42
Issue: 14
Pages: 9447-60
•
•
•
•
•
Publication
24726324 | -
First Author: Gregersen LH
Year: 2014
Journal: Mol Cell
Title: MOV10 Is a 5' to 3' RNA helicase contributing to UPF1 mRNA target degradation by translocation along 3' UTRs.
Volume: 54
Issue: 4
Pages: 573-85
•
•
•
•
•
Publication
16452507 | -
First Author: Kashima I
Year: 2006
Journal: Genes Dev
Title: Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay.
Volume: 20
Issue: 3
Pages: 355-67
•
•
•
•
•
Publication
- | J:162990
     
First Author: Dietz HC
Year: 2010
Journal: MGI Direct Data Submission
Title: JR strain 10939
•
•
•
•
•
Publication
16931876 | -
First Author: Kadlec J
Year: 2006
Journal: RNA
Title: Crystal structure of the UPF2-interacting domain of nonsense-mediated mRNA decay factor UPF1.
Volume: 12
Issue: 10
Pages: 1817-24
•
•
•
•
•
Publication
36255229 | J:331055
 
First Author: Chousal JN
Year: 2022
Journal: Development
Title: Progression of the pluripotent epiblast depends upon the NMD factor UPF2.
Volume: 149
Issue: 21
•
•
•
•
•
Publication
9032286 | -
First Author: He F
Year: 1997
Journal: Mol Cell Biol
Title: Upf1p, Nmd2p, and Upf3p are interacting components of the yeast nonsense-mediated mRNA decay pathway.
Volume: 17
Issue: 3
Pages: 1580-94
•
•
•
•
•
Publication
33006314 | J:298688
   
First Author: Li M
Year: 2020
Journal: Elife
Title: GAS5 protects against osteoporosis by targeting UPF1/SMAD7 axis in osteoblast differentiation.
Volume: 9
•
•
•
•
•
Publication
23359859 | J:198011
 
First Author: Eom T
Year: 2013
Journal: Elife
Title: NOVA-dependent regulation of cryptic NMD exons controls synaptic protein levels after seizure.
Volume: 2
Pages: e00178
•
•
•
•
•
Publication
18362360 | J:189981
First Author: Agranat L
Year: 2008
Journal: Proc Natl Acad Sci U S A
Title: The editing enzyme ADAR1 and the mRNA surveillance protein hUpf1 interact in the cell nucleus.
Volume: 105
Issue: 13
Pages: 5028-33
•
•
•
•
•
Publication
25744026 | J:258608
First Author: Jia J
Year: 2015
Journal: Cell Death Differ
Title: Caspases shutdown nonsense-mediated mRNA decay during apoptosis.
Volume: 22
Issue: 11
Pages: 1754-63
•
•
•
•
•
Publication
16289965 | -
First Author: Yamashita A
Year: 2005
Journal: Biochim Biophys Acta
Title: The role of SMG-1 in nonsense-mediated mRNA decay.
Volume: 1754
Issue: 1-2
Pages: 305-15
•
•
•
•
•
Publication
17229728 | -
First Author: Morita T
Year: 2007
Journal: J Biol Chem
Title: Distant N- and C-terminal domains are required for intrinsic kinase activity of SMG-1, a critical component of nonsense-mediated mRNA decay.
Volume: 282
Issue: 11
Pages: 7799-808
•
•
•
•
•
Publication
26656492 | J:253173
First Author: Sanchez G
Year: 2016
Journal: Nucleic Acids Res
Title: A novel role for CARM1 in promoting nonsense-mediated mRNA decay: potential implications for spinal muscular atrophy.
Volume: 44
Issue: 6
Pages: 2661-76
•
•
•
•
•
Publication
24185201 | J:210040
First Author: Cho H
Year: 2013
Journal: Biochim Biophys Acta
Title: SMG1 regulates adipogenesis via targeting of staufen1-mediated mRNA decay.
Volume: 1829
Issue: 12
Pages: 1276-87
•
•
•
•
•
Publication
32737261 | J:295983
 
First Author: Echols J
Year: 2020
Journal: Dis Model Mech
Title: A regulated NMD mouse model supports NMD inhibition as a viable therapeutic option to treat genetic diseases.
Volume: 13
Issue: 8
•
•
•
•
•
Publication
11163187 | -
First Author: Lykke-Andersen J
Year: 2000
Journal: Cell
Title: Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon.
Volume: 103
Issue: 7
Pages: 1121-31
•
•
•
•
•
Publication
18483223 | J:134765
First Author: Weischenfeldt J
Year: 2008
Journal: Genes Dev
Title: NMD is essential for hematopoietic stem and progenitor cells and for eliminating by-products of programmed DNA rearrangements.
Volume: 22
Issue: 10
Pages: 1381-96
•
•
•
•
•
Publication
32075754 | -
First Author: Appanah R
Year: 2020
Journal: Cell Rep
Title: Sen1 Is Recruited to Replication Forks via Ctf4 and Mrc1 and Promotes Genome Stability.
Volume: 30
Issue: 7
Pages: 2094-2105.e9
•
•
•
•
•
Publication
28444146 | J:247924
First Author: MacDonald CC
Year: 2017
Journal: Biol Reprod
Title: Nonsense in the testis: multiple roles for nonsense-mediated decay revealed in male reproduction.
Volume: 96
Issue: 5
Pages: 939-947
•
•
•
•
•
Publication
15121901 | -
First Author: Ursic D
Year: 2004
Journal: Nucleic Acids Res
Title: Multiple protein/protein and protein/RNA interactions suggest roles for yeast DNA/RNA helicase Sen1p in transcription, transcription-coupled DNA repair and RNA processing.
Volume: 32
Issue: 8
Pages: 2441-52
•
•
•
•
•
Publication
28408439 | -
First Author: Leonaitė B
Year: 2017
Journal: EMBO J
Title: Sen1 has unique structural features grafted on the architecture of the Upf1-like helicase family.
Volume: 36
Issue: 11
Pages: 1590-1604
•
•
•
•
•
Publication
8943355 | -
First Author: Steinmetz EJ
Year: 1996
Journal: Mol Cell Biol
Title: Repression of gene expression by an exogenous sequence element acting in concert with a heterogeneous nuclear ribonucleoprotein-like protein, Nrd1, and the putative helicase Sen1.
Volume: 16
Issue: 12
Pages: 6993-7003
•
•
•
•
•




MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

Copyright © 2017 by The Jackson Laboratory. All Rights Reserved

© 2002 - 2017 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom