Type |
Details |
Score |
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2021-04-16 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:3281228 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6693029 |
Age: |
postnatal adult |
Image: |
UC Davis_1869766 |
|
Specimen Label: |
UC Davis_1869766 |
Detected: |
true |
Specimen Num: |
81 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2021-04-16 |
Strength: |
Present |
Sex: |
Female |
Emaps: |
EMAPS:2991528 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6693029 |
Age: |
postnatal adult |
Image: |
UC Davis_1869747 |
|
Specimen Label: |
UC Davis_1869747 |
Detected: |
true |
Specimen Num: |
67 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2021-04-16 |
Strength: |
Present |
Sex: |
Female |
Emaps: |
EMAPS:2991528 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6693029 |
Age: |
postnatal adult |
Image: |
UC Davis_1869748 |
|
Specimen Label: |
UC Davis_1869748 |
Detected: |
true |
Specimen Num: |
68 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2019-10-07 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:360409 |
Pattern: |
Not Specified |
Stage: |
TS09 |
Assay Id: |
MGI:6362890 |
Age: |
embryonic day 6.5 |
Image: |
E6.5 |
|
Specimen Label: |
E6.5 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2019-10-07 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:360409 |
Pattern: |
Not Specified |
Stage: |
TS09 |
Assay Id: |
MGI:6362890 |
Age: |
embryonic day 6.5 |
Image: |
E6.5 - section a |
|
Specimen Label: |
E6.5 - section a |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2019-10-07 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:360409 |
Pattern: |
Not Specified |
Stage: |
TS09 |
Assay Id: |
MGI:6362890 |
Age: |
embryonic day 6.5 |
Image: |
E6.5 - section b |
|
Specimen Label: |
E6.5 - section b |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2019-10-07 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:3604011 |
Pattern: |
Not Specified |
Stage: |
TS11 |
Assay Id: |
MGI:6362890 |
Age: |
embryonic day 7.5 |
Image: |
E7.5 |
|
Specimen Label: |
E7.5 |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2019-10-07 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:3604011 |
Pattern: |
Not Specified |
Stage: |
TS11 |
Assay Id: |
MGI:6362890 |
Age: |
embryonic day 7.5 |
Image: |
E7.5 - section a |
|
Specimen Label: |
E7.5 - section a |
Detected: |
true |
Specimen Num: |
5 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2019-10-07 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:3604011 |
Pattern: |
Not Specified |
Stage: |
TS11 |
Assay Id: |
MGI:6362890 |
Age: |
embryonic day 7.5 |
Image: |
E7.5 - section b |
|
Specimen Label: |
E7.5 - section b |
Detected: |
true |
Specimen Num: |
6 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2019-10-07 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:3604013 |
Pattern: |
Not Specified |
Stage: |
TS13 |
Assay Id: |
MGI:6362890 |
Age: |
embryonic day 8.5 |
Image: |
E8.5 |
|
Specimen Label: |
E8.5 |
Detected: |
true |
Specimen Num: |
7 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2021-04-16 |
Strength: |
Present |
Sex: |
Female |
Emaps: |
EMAPS:1796228 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6693029 |
Age: |
postnatal adult |
Image: |
UC Davis_1869743 |
|
Specimen Label: |
UC Davis_1869743 |
Detected: |
true |
Specimen Num: |
63 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2021-04-16 |
Strength: |
Present |
Sex: |
Female |
Emaps: |
EMAPS:1796228 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6693029 |
Age: |
postnatal adult |
Image: |
UC Davis_1869744 |
|
Specimen Label: |
UC Davis_1869744 |
Detected: |
true |
Specimen Num: |
64 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2021-04-16 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:1868228 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6693029 |
Age: |
postnatal adult |
Image: |
UC Davis_1869847 |
|
Specimen Label: |
UC Davis_1869847 |
Detected: |
true |
Specimen Num: |
156 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2021-04-16 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:1868228 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6693029 |
Age: |
postnatal adult |
Image: |
UC Davis_1869848 |
|
Specimen Label: |
UC Davis_1869848 |
Detected: |
true |
Specimen Num: |
157 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2021-04-16 |
Strength: |
Present |
Sex: |
Female |
Emaps: |
EMAPS:1881228 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6693029 |
Age: |
postnatal adult |
Image: |
UC Davis_1869671 |
|
Specimen Label: |
UC Davis_1869671 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2021-04-16 |
Strength: |
Present |
Sex: |
Female |
Emaps: |
EMAPS:1881228 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6693029 |
Age: |
postnatal adult |
Image: |
UC Davis_1869672 |
|
Specimen Label: |
UC Davis_1869672 |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2021-04-16 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:1881228 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6693029 |
Age: |
postnatal adult |
Image: |
UC Davis_1869754 |
|
Specimen Label: |
UC Davis_1869754 |
Detected: |
true |
Specimen Num: |
72 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2021-04-16 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:1881228 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6693029 |
Age: |
postnatal adult |
Image: |
UC Davis_1869755 |
|
Specimen Label: |
UC Davis_1869755 |
Detected: |
true |
Specimen Num: |
73 |
|
•
•
•
•
•
|
Publication |
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2000 |
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GenBank Submission |
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Mus musculus Ran-binding protein 2 gene, complete cds |
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Pages: |
AF279458 |
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•
•
•
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Publication |
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Mouse Genome Sequence Project Annotation |
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Gene Ontology annotation based on UniPathway vocabulary mapping |
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Alleles produced for the KOMP project by Velocigene (Regeneron Pharmaceuticals) |
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Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
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Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
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UniProt Feature |
Begin: |
1 |
Description: |
E3 SUMO-protein ligase RanBP2 |
Type: |
chain |
End: |
3053 |
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UniProt Feature |
Begin: |
57 |
Description: |
Interaction with RANBP2 |
Type: |
site |
End: |
57 |
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UniProt Feature |
Begin: |
25 |
Description: |
Interaction with RANBP2 |
Type: |
site |
End: |
25 |
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UniProt Feature |
Begin: |
4 |
Description: |
Interaction with RANBP2 |
Type: |
site |
End: |
4 |
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Gene |
Type: |
gene |
Organism: |
chimpanzee |
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Publication |
First Author: |
Wu K |
Year: |
2018 |
Journal: |
J Cell Sci |
Title: |
GCN5L1 interacts with αTAT1 and RanBP2 to regulate hepatic α-tubulin acetylation and lysosome trafficking. |
Volume: |
131 |
Issue: |
22 |
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Interaction Experiment |
Description: |
The nucleoporin RanBP2 has SUMO1 E3 ligase activity. |
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Publication |
First Author: |
Pichler A |
Year: |
2002 |
Journal: |
Cell |
Title: |
The nucleoporin RanBP2 has SUMO1 E3 ligase activity. |
Volume: |
108 |
Issue: |
1 |
Pages: |
109-20 |
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Allele |
Name: |
RAN binding protein 2; targeted mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Targeted |
Attribute String: |
Conditional ready, No functional change |
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Publication |
First Author: |
Yoshimura SH |
Year: |
2013 |
Journal: |
J Cell Sci |
Title: |
Intermolecular disulfide bonds between nucleoporins regulate karyopherin-dependent nuclear transport. |
Volume: |
126 |
Issue: |
Pt 14 |
Pages: |
3141-50 |
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Publication |
First Author: |
Swaminathan S |
Year: |
2004 |
Journal: |
J Cell Biol |
Title: |
RanGAP1*SUMO1 is phosphorylated at the onset of mitosis and remains associated with RanBP2 upon NPC disassembly. |
Volume: |
164 |
Issue: |
7 |
Pages: |
965-71 |
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Publication |
First Author: |
Kirsh O |
Year: |
2002 |
Journal: |
EMBO J |
Title: |
The SUMO E3 ligase RanBP2 promotes modification of the HDAC4 deacetylase. |
Volume: |
21 |
Issue: |
11 |
Pages: |
2682-91 |
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Publication |
First Author: |
Castagnet P |
Year: |
2003 |
Journal: |
Hum Mol Genet |
Title: |
RPGRIP1s with distinct neuronal localization and biochemical properties associate selectively with RanBP2 in amacrine neurons. |
Volume: |
12 |
Issue: |
15 |
Pages: |
1847-63 |
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Publication |
First Author: |
Klein UR |
Year: |
2009 |
Journal: |
Mol Biol Cell |
Title: |
RanBP2 and SENP3 function in a mitotic SUMO2/3 conjugation-deconjugation cycle on Borealin. |
Volume: |
20 |
Issue: |
1 |
Pages: |
410-8 |
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Strain |
Attribute String: |
targeted mutation, mutant stock |
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Publication |
First Author: |
Mahajan R |
Year: |
1997 |
Journal: |
Cell |
Title: |
A small ubiquitin-related polypeptide involved in targeting RanGAP1 to nuclear pore complex protein RanBP2. |
Volume: |
88 |
Issue: |
1 |
Pages: |
97-107 |
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Publication |
First Author: |
Liu H |
Year: |
2015 |
Journal: |
Mol Cell |
Title: |
The Immune Adaptor SLP-76 Binds to SUMO-RANGAP1 at Nuclear Pore Complex Filaments to Regulate Nuclear Import of Transcription Factors in T Cells. |
Volume: |
59 |
Issue: |
5 |
Pages: |
840-9 |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
330
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Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
185
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Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
377
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Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
530
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Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
38
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Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
330
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Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
502
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Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
320
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Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
255
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Fragment?: |
true |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
254
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Fragment?: |
true |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
40
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Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
293
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Fragment?: |
false |
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Publication |
First Author: |
Yaseen NR |
Year: |
1999 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Two distinct classes of Ran-binding sites on the nucleoporin Nup-358. |
Volume: |
96 |
Issue: |
10 |
Pages: |
5516-21 |
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Protein Domain |
Type: |
Domain |
Description: |
Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry representsthe zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. |
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