Type |
Details |
Score |
Publication |
First Author: |
Cohen S |
Year: |
2005 |
Journal: |
Eur J Neurosci |
Title: |
A semaphorin code defines subpopulations of spinal motor neurons during mouse development. |
Volume: |
21 |
Issue: |
7 |
Pages: |
1767-76 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tarantino LM |
Year: |
2000 |
Journal: |
Genomics |
Title: |
A high-resolution radiation hybrid map of the proximal portion of mouse chromosome 5. |
Volume: |
66 |
Issue: |
1 |
Pages: |
55-64 |
|
•
•
•
•
•
|
Publication |
First Author: |
Xu C |
Year: |
2008 |
Journal: |
Gene Expr Patterns |
Title: |
Expression of Robo/Slit and Semaphorin/Plexin/Neuropilin family members in the developing hypothalamic paraventricular and supraoptic nuclei. |
Volume: |
8 |
Issue: |
7-8 |
Pages: |
502-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Meadows SM |
Year: |
2012 |
Journal: |
Circ Res |
Title: |
Integration of repulsive guidance cues generates avascular zones that shape mammalian blood vessels. |
Volume: |
110 |
Issue: |
1 |
Pages: |
34-46 |
|
•
•
•
•
•
|
Publication |
First Author: |
Sandireddy R |
Year: |
2019 |
Journal: |
JCI Insight |
Title: |
Semaphorin 3E/PlexinD1 signaling is required for cardiac ventricular compaction. |
Volume: |
4 |
Issue: |
16 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Lexicon Genetics Inc |
Year: |
2005 |
Journal: |
MGI Direct Data Submission |
Title: |
NIH initiative supporting placement of Lexicon Genetics, Inc. mice into public repositories |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Yoshida Y |
Year: |
2006 |
Journal: |
Neuron |
Title: |
PlexinA1 signaling directs the segregation of proprioceptive sensory axons in the developing spinal cord. |
Volume: |
52 |
Issue: |
5 |
Pages: |
775-88 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chen B |
Year: |
2005 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Fezl regulates the differentiation and axon targeting of layer 5 subcortical projection neurons in cerebral cortex. |
Volume: |
102 |
Issue: |
47 |
Pages: |
17184-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Abonnenc M |
Year: |
2013 |
Journal: |
Circ Res |
Title: |
Extracellular matrix secretion by cardiac fibroblasts: role of microRNA-29b and microRNA-30c. |
Volume: |
113 |
Issue: |
10 |
Pages: |
1138-47 |
|
•
•
•
•
•
|
Publication |
First Author: |
Okazaki N |
Year: |
2003 |
Journal: |
DNA Res |
Title: |
Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. |
Volume: |
10 |
Issue: |
4 |
Pages: |
167-80 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2003 |
|
Title: |
Data Curation Using Mouse Genome Assembly |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
MGI and IMPC |
Year: |
2018 |
Journal: |
Database Release |
Title: |
MGI Load of Endonuclease-Mediated Alleles (CRISPR) from the International Mouse Phenotyping Consortium (IMPC) |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Thompson CL |
Year: |
2014 |
Journal: |
Neuron |
Title: |
A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. |
Volume: |
83 |
Issue: |
2 |
Pages: |
309-323 |
|
•
•
•
•
•
|
Publication |
First Author: |
Stryke D |
Year: |
2003 |
Journal: |
Nucleic Acids Res |
Title: |
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. |
Volume: |
31 |
Issue: |
1 |
Pages: |
278-81 |
|
•
•
•
•
•
|
Publication |
First Author: |
Velocigene |
Year: |
2008 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the KOMP project by Velocigene (Regeneron Pharmaceuticals) |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
International Mouse Strain Resource |
Year: |
2014 |
Journal: |
Database Download |
Title: |
MGI download of germline transmission data for alleles from IMSR strain data |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Wellcome Trust Sanger Institute |
Year: |
2010 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the EUCOMM and EUCOMMTools projects by the Wellcome Trust Sanger Institute |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC) |
Year: |
2014 |
Journal: |
Database Release |
Title: |
Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Hansen GM |
Year: |
2008 |
Journal: |
Genome Res |
Title: |
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. |
Volume: |
18 |
Issue: |
10 |
Pages: |
1670-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Magdaleno S |
Year: |
2006 |
Journal: |
PLoS Biol |
Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
Volume: |
4 |
Issue: |
4 |
Pages: |
e86 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2003 |
|
Title: |
MGI Sequence Curation Reference |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
Adams DJ |
Year: |
2024 |
Journal: |
Nature |
Title: |
Genetic determinants of micronucleus formation in vivo. |
Volume: |
627 |
Issue: |
8002 |
Pages: |
130-136 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zambrowicz BP |
Year: |
2003 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. |
Volume: |
100 |
Issue: |
24 |
Pages: |
14109-14 |
|
•
•
•
•
•
|
Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
|
Title: |
GemPharmatech Website. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Skarnes WC |
Year: |
2011 |
Journal: |
Nature |
Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
Volume: |
474 |
Issue: |
7351 |
Pages: |
337-42 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI) |
Year: |
2008 |
Journal: |
Database Download |
Title: |
Mouse Gene Trap Data Load from dbGSS |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GOA curators |
Year: |
2016 |
|
Title: |
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
Year: |
2004 |
Journal: |
Database Release |
Title: |
Mouse T31 Radiation Hybrid Data Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Diez-Roux G |
Year: |
2011 |
Journal: |
PLoS Biol |
Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Volume: |
9 |
Issue: |
1 |
Pages: |
e1000582 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
MGI Genome Annotation Group and UniGene Staff |
Year: |
2015 |
Journal: |
Database Download |
Title: |
MGI-UniGene Interconnection Effort |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
|
Title: |
Annotation inferences using phylogenetic trees |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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|
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•
•
•
•
•
|
Allele |
Name: |
transgene insertion OX19, GENSAT Project at Rockefeller University |
Allele Type: |
Transgenic |
Attribute String: |
Recombinase |
|
•
•
•
•
•
|
Strain |
Attribute String: |
mutant stock, transgenic |
|
•
•
•
•
•
|
Allele |
Name: |
microtubule-associated protein tau; targeted mutation 3, Silvia Arber |
Allele Type: |
Targeted |
Attribute String: |
Conditional ready, No functional change |
|
•
•
•
•
•
|
Allele |
Name: |
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; targeted mutation 1.1, Z Josh Huang |
Allele Type: |
Targeted |
Attribute String: |
Inducible, Recombinase |
|
•
•
•
•
•
|
Publication |
First Author: |
Klagsbrun M |
Year: |
2010 |
Journal: |
J Clin Invest |
Title: |
Semaphorin 3E, an exception to the rule. |
Volume: |
120 |
Issue: |
8 |
Pages: |
2658-60 |
|
•
•
•
•
•
|
Publication |
First Author: |
Rehman M |
Year: |
2016 |
Journal: |
PLoS One |
Title: |
PlexinD1 Is a Novel Transcriptional Target and Effector of Notch Signaling in Cancer Cells. |
Volume: |
11 |
Issue: |
10 |
Pages: |
e0164660 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
Plexin D1 belongs to the plexin family, whose members cell surface receptors for extracellular signals of the semaphorin family []. Plexin D1 is the receptor of Sema3E that regulates axon guidance, angiogenesis, tumour growth, and tumour metastasis []. In endothelial cells, Sema3E-PlexinD1 inhibit cell-substrate adhesion and exert an anti-angiogenic function, while in cancer cells they have been shown to have a pro-tumorigenic role []. The Sema domain is located at the N terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a ligand-recognition and -binding module. |
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•
•
•
•
•
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Genotype |
Symbol: |
Chat/Chat<+> Mapt/Mapt |
Background: |
involves: 129P2/OlaHsd * 129S6/SvEvTac * C57BL/6 |
Zygosity: |
cn |
Has Mutant Allele: |
true |
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•
•
•
•
•
|
Publication |
First Author: |
Pascoe HG |
Year: |
2015 |
Journal: |
Prog Biophys Mol Biol |
Title: |
Structural mechanisms of plexin signaling. |
Volume: |
118 |
Issue: |
3 |
Pages: |
161-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Fukushima Y |
Year: |
2020 |
Journal: |
EMBO J |
Title: |
RhoJ integrates attractive and repulsive cues in directional migration of endothelial cells. |
Volume: |
39 |
Issue: |
12 |
Pages: |
e102930 |
|
•
•
•
•
•
|
Publication |
First Author: |
Pozas E |
Year: |
2001 |
Journal: |
Mol Cell Neurosci |
Title: |
Age-dependent effects of secreted Semaphorins 3A, 3F, and 3E on developing hippocampal axons: in vitro effects and phenotype of Semaphorin 3A (-/-) mice. |
Volume: |
18 |
Issue: |
1 |
Pages: |
26-43 |
|
•
•
•
•
•
|
Publication |
First Author: |
Suda K |
Year: |
2014 |
Journal: |
Invest Ophthalmol Vis Sci |
Title: |
Therapeutic potential of semaphorin 3E for the treatment of choroidal neovascularization. |
Volume: |
55 |
Issue: |
8 |
Pages: |
4700-6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Duke-Cohan JS |
Year: |
2018 |
Journal: |
Sci Signal |
Title: |
Regulation of thymocyte trafficking by Tagap, a GAP domain protein linked to human autoimmunity. |
Volume: |
11 |
Issue: |
534 |
|
|
•
•
•
•
•
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Publication |
First Author: |
Haider MT |
Year: |
2020 |
Journal: |
Breast Cancer Res |
Title: |
Breast cancer bone metastases are attenuated in a Tgif1-deficient bone microenvironment. |
Volume: |
22 |
Issue: |
1 |
Pages: |
34 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1925
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Expression Nervous System Atlas (GENSAT) Project, The Rockefeller University (New York, NY) |
Year: |
2005 |
Journal: |
Database Download |
Title: |
MGI download of GENSAT transgene data |
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•
•
•
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•
|