Type |
Details |
Score |
Publication |
First Author: |
Szargel R |
Year: |
2016 |
Journal: |
Hum Mol Genet |
Title: |
The PINK1, synphilin-1 and SIAH-1 complex constitutes a novel mitophagy pathway. |
Volume: |
25 |
Issue: |
16 |
Pages: |
3476-3490 |
|
•
•
•
•
•
|
Publication |
First Author: |
Okatsu K |
Year: |
2018 |
Journal: |
Sci Rep |
Title: |
Structural insights into ubiquitin phosphorylation by PINK1. |
Volume: |
8 |
Issue: |
1 |
Pages: |
10382 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
PINK1 is a mitochondrial serine/threonine kinase that acts as a sensor of mitochondrial damage []. It phosphorylates ubiquitin (Ub) and the Ub-like domain (UBL) of the E3 Ub ligase parkin at Ser65. The phosphorylation of Ub and the parkin UBL facilitates the transition from the autoinhibition state to the catalytically active state in parkin []. Upon mitochondrial damage, PINK1 accumulates on the outer mitochondrial membrane (OMM), where it may recruit and activate Parkin []. PINK1 has also been shown to phosphorylate Miro, a component of the primary motor/adaptor complex that anchors kinesin to the mitochondrial surface. The phosphorylation of Miro activates proteasomal degradation of Miro in a Parkin-dependent manner []. PINK1 contains an N-terminal mitochondrial targeting sequence (MTS), a transmembrane domain (TM), a highly conserved serine/threonine kinase domain, and a C-terminal auto-regulatory domain. Mutations of the PINK1 and Parkin genes have been linked to familial Parkinson's disease (PD) []. |
|
•
•
•
•
•
|
Publication |
First Author: |
Eyal A |
Year: |
2006 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Synphilin-1A: an aggregation-prone isoform of synphilin-1 that causes neuronal death and is present in aggregates from alpha-synucleinopathy patients. |
Volume: |
103 |
Issue: |
15 |
Pages: |
5917-22 |
|
•
•
•
•
•
|
Publication |
First Author: |
Szargel R |
Year: |
2008 |
Journal: |
Cell Mol Life Sci |
Title: |
Synphilin-1 isoforms in Parkinson's disease: regulation by phosphorylation and ubiquitylation. |
Volume: |
65 |
Issue: |
1 |
Pages: |
80-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Humbert J |
Year: |
2007 |
Journal: |
Neurobiol Dis |
Title: |
Parkin and synphilin-1 isoform expression changes in Lewy body diseases. |
Volume: |
26 |
Issue: |
3 |
Pages: |
681-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Casadei N |
Year: |
2014 |
Journal: |
Hum Mol Genet |
Title: |
Overexpression of synphilin-1 promotes clearance of soluble and misfolded alpha-synuclein without restoring the motor phenotype in aged A30P transgenic mice. |
Volume: |
23 |
Issue: |
3 |
Pages: |
767-81 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
Synphilin-1 interacts with and is ubiquitylated by the E3 ubiquitin ligase SIAH. It also interacs with PINK1 and is recruited to the mitochondria where promotes PINK1-dependent mitophagy. Synphilin-1, SIAH-1 and PINK1 seem to constitute a new mitophagy pathway [].Synphilin-1 is an alpha-synuclein-interacting protein that promotes the formation of inclusion bodies []. Alternative splicing gives rise to at least eight synphilin-1 isoforms []. Among them, synphilin-1A is an aggregation-prone protein that causes neuronal toxicity []. Synphilin-1A has been linked to Parkinson's disease []. |
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
GSE60413 |
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
408
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
962
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
915
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
914
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
666
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
503
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
965
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
869
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
965
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
855
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
687
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
965
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
580
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
550
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
580
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
590
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
558
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Yun J |
Year: |
2014 |
Journal: |
Elife |
Title: |
MUL1 acts in parallel to the PINK1/parkin pathway in regulating mitofusin and compensates for loss of PINK1/parkin. |
Volume: |
3 |
|
Pages: |
e01958 |
|
•
•
•
•
•
|
Publication |
First Author: |
Liang H |
Year: |
2014 |
Journal: |
Cell Metab |
Title: |
PTENα, a PTEN isoform translated through alternative initiation, regulates mitochondrial function and energy metabolism. |
Volume: |
19 |
Issue: |
5 |
Pages: |
836-48 |
|
•
•
•
•
•
|
Publication |
First Author: |
Sarraf SA |
Year: |
2019 |
Journal: |
Cell Rep |
Title: |
PINK1/Parkin Influences Cell Cycle by Sequestering TBK1 at Damaged Mitochondria, Inhibiting Mitosis. |
Volume: |
29 |
Issue: |
1 |
Pages: |
225-235.e5 |
|
•
•
•
•
•
|
Publication |
First Author: |
Fang EF |
Year: |
2014 |
Journal: |
Cell |
Title: |
Defective mitophagy in XPA via PARP-1 hyperactivation and NAD(+)/SIRT1 reduction. |
Volume: |
157 |
Issue: |
4 |
Pages: |
882-896 |
|
•
•
•
•
•
|
Publication |
First Author: |
Carneiro FRG |
Year: |
2018 |
Journal: |
Cell Rep |
Title: |
An Essential Role for ECSIT in Mitochondrial Complex I Assembly and Mitophagy in Macrophages. |
Volume: |
22 |
Issue: |
10 |
Pages: |
2654-2666 |
|
•
•
•
•
•
|
Publication |
First Author: |
Murakami K |
Year: |
2021 |
Journal: |
Cell Rep |
Title: |
OGT Regulates Hematopoietic Stem Cell Maintenance via PINK1-Dependent Mitophagy. |
Volume: |
34 |
Issue: |
1 |
Pages: |
108579 |
|
•
•
•
•
•
|
Publication |
First Author: |
Baranov SV |
Year: |
2019 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Mitochondria modulate programmed neuritic retraction. |
Volume: |
116 |
Issue: |
2 |
Pages: |
650-659 |
|
•
•
•
•
•
|
Publication |
First Author: |
Gong G |
Year: |
2015 |
Journal: |
Science |
Title: |
Parkin-mediated mitophagy directs perinatal cardiac metabolic maturation in mice. |
Volume: |
350 |
Issue: |
6265 |
Pages: |
aad2459 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhu Q |
Year: |
2023 |
Journal: |
Nat Commun |
Title: |
GRAF1 integrates PINK1-Parkin signaling and actin dynamics to mediate cardiac mitochondrial homeostasis. |
Volume: |
14 |
Issue: |
1 |
Pages: |
8187 |
|
•
•
•
•
•
|
Publication |
First Author: |
Dhungel N |
Year: |
2015 |
Journal: |
Neuron |
Title: |
Parkinson's disease genes VPS35 and EIF4G1 interact genetically and converge on α-synuclein. |
Volume: |
85 |
Issue: |
1 |
Pages: |
76-87 |
|
•
•
•
•
•
|
Publication |
First Author: |
Okatsu K |
Year: |
2010 |
Journal: |
Genes Cells |
Title: |
p62/SQSTM1 cooperates with Parkin for perinuclear clustering of depolarized mitochondria. |
Volume: |
15 |
Issue: |
8 |
Pages: |
887-900 |
|
•
•
•
•
•
|
Publication |
First Author: |
Torii S |
Year: |
2020 |
Journal: |
Int J Mol Sci |
Title: |
Mitochondrial E3 Ubiquitin Ligase Parkin: Relationships with Other Causal Proteins in Familial Parkinson's Disease and Its Substrate-Involved Mouse Experimental Models. |
Volume: |
21 |
Issue: |
4 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Khang R |
Year: |
2015 |
Journal: |
Neuroscience |
Title: |
Dysregulation of parkin in the substantia nigra of db/db and high-fat diet mice. |
Volume: |
294 |
|
Pages: |
182-92 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mucha O |
Year: |
2021 |
Journal: |
Int J Mol Sci |
Title: |
Dysregulated Autophagy and Mitophagy in a Mouse Model of Duchenne Muscular Dystrophy Remain Unchanged Following Heme Oxygenase-1 Knockout. |
Volume: |
23 |
Issue: |
1 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Ochi S |
Year: |
2020 |
Journal: |
Mol Neurobiol |
Title: |
Identifying Blood Transcriptome Biomarkers of Alzheimer's Disease Using Transgenic Mice. |
Volume: |
57 |
Issue: |
12 |
Pages: |
4941-4951 |
|
•
•
•
•
•
|
Publication |
First Author: |
Rossin F |
Year: |
2015 |
Journal: |
Cell Death Differ |
Title: |
Transglutaminase 2 ablation leads to mitophagy impairment associated with a metabolic shift towards aerobic glycolysis. |
Volume: |
22 |
Issue: |
3 |
Pages: |
408-18 |
|
•
•
•
•
•
|
Publication |
First Author: |
Roe ND |
Year: |
2015 |
Journal: |
Biochim Biophys Acta |
Title: |
Targeted deletion of PTEN in cardiomyocytes renders cardiac contractile dysfunction through interruption of Pink1-AMPK signaling and autophagy. |
Volume: |
1852 |
Issue: |
2 |
Pages: |
290-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hull TD |
Year: |
2016 |
Journal: |
JCI Insight |
Title: |
Heme oxygenase-1 regulates mitochondrial quality control in the heart. |
Volume: |
1 |
Issue: |
2 |
Pages: |
e85817 |
|
•
•
•
•
•
|
Publication |
First Author: |
Dongil P |
Year: |
2018 |
Journal: |
Sci Rep |
Title: |
Pas Kinase Deficiency Triggers Antioxidant Mechanisms in the Liver. |
Volume: |
8 |
Issue: |
1 |
Pages: |
13810 |
|
•
•
•
•
•
|
Publication |
First Author: |
Peker N |
Year: |
2018 |
Journal: |
Am J Physiol Cell Physiol |
Title: |
Loss of Parkin impairs mitochondrial function and leads to muscle atrophy. |
Volume: |
315 |
Issue: |
2 |
Pages: |
C164-C185 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shires SE |
Year: |
2020 |
Journal: |
Sci Rep |
Title: |
Nuclear Parkin Activates the ERRα Transcriptional Program and Drives Widespread Changes in Gene Expression Following Hypoxia. |
Volume: |
10 |
Issue: |
1 |
Pages: |
8499 |
|
•
•
•
•
•
|
Publication |
First Author: |
Roy A |
Year: |
2016 |
Journal: |
Sci Rep |
Title: |
BPOZ-2 Gene Delivery Ameliorates Alpha-Synucleinopathy in A53T Transgenic Mouse Model of Parkinson's Disease. |
Volume: |
6 |
|
Pages: |
22067 |
|
•
•
•
•
•
|
Publication |
First Author: |
Irrcher I |
Year: |
2010 |
Journal: |
Hum Mol Genet |
Title: |
Loss of the Parkinson's disease-linked gene DJ-1 perturbs mitochondrial dynamics. |
Volume: |
19 |
Issue: |
19 |
Pages: |
3734-46 |
|
•
•
•
•
•
|
Publication |
First Author: |
Narala VR |
Year: |
2018 |
Journal: |
Am J Physiol Lung Cell Mol Physiol |
Title: |
Akap1 genetic deletion increases the severity of hyperoxia-induced acute lung injury in mice. |
Volume: |
314 |
Issue: |
5 |
Pages: |
L860-L870 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhou G |
Year: |
2023 |
Journal: |
Int Immunopharmacol |
Title: |
Mitochondrial calcium uptake 3 mitigates cerebral amyloid angiopathy-related neuronal death and glial inflammation by reducing mitochondrial dysfunction. |
Volume: |
117 |
|
Pages: |
109614 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lu W |
Year: |
2016 |
Journal: |
PLoS One |
Title: |
Mitochondrial Protein PGAM5 Regulates Mitophagic Protection against Cell Necroptosis. |
Volume: |
11 |
Issue: |
1 |
Pages: |
e0147792 |
|
•
•
•
•
•
|
Publication |
First Author: |
Malik AU |
Year: |
2021 |
Journal: |
Biochem J |
Title: |
Deciphering the LRRK code: LRRK1 and LRRK2 phosphorylate distinct Rab proteins and are regulated by diverse mechanisms. |
Volume: |
478 |
Issue: |
3 |
Pages: |
553-578 |
|
•
•
•
•
•
|
Publication |
First Author: |
Luo H |
Year: |
2021 |
Journal: |
Acta Physiol (Oxf) |
Title: |
Pharmacological inhibition of USP30 activates tissue-specific mitophagy. |
Volume: |
232 |
Issue: |
3 |
Pages: |
e13666 |
|
•
•
•
•
•
|
Publication |
First Author: |
Liu T |
Year: |
2023 |
Journal: |
Cells |
Title: |
Disruption of Mitophagy Flux through the PARL-PINK1 Pathway by CHCHD10 Mutations or CHCHD10 Depletion. |
Volume: |
12 |
Issue: |
24 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
McWilliams TG |
Year: |
2018 |
Journal: |
Open Biol |
Title: |
Phosphorylation of Parkin at serine 65 is essential for its activation in vivo. |
Volume: |
8 |
Issue: |
11 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Dusonchet J |
Year: |
2014 |
Journal: |
Hum Mol Genet |
Title: |
A Parkinson's disease gene regulatory network identifies the signaling protein RGS2 as a modulator of LRRK2 activity and neuronal toxicity. |
Volume: |
23 |
Issue: |
18 |
Pages: |
4887-905 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shi G |
Year: |
2011 |
Journal: |
Hum Mol Genet |
Title: |
Functional alteration of PARL contributes to mitochondrial dysregulation in Parkinson's disease. |
Volume: |
20 |
Issue: |
10 |
Pages: |
1966-74 |
|
•
•
•
•
•
|
Publication |
First Author: |
Quadri M |
Year: |
2013 |
Journal: |
Hum Mutat |
Title: |
Mutation in the SYNJ1 gene associated with autosomal recessive, early-onset Parkinsonism. |
Volume: |
34 |
Issue: |
9 |
Pages: |
1208-15 |
|
•
•
•
•
•
|
Publication |
First Author: |
Coughlin L |
Year: |
2015 |
Journal: |
Invest Ophthalmol Vis Sci |
Title: |
Mitochondrial morphology differences and mitophagy deficit in murine glaucomatous optic nerve. |
Volume: |
56 |
Issue: |
3 |
Pages: |
1437-46 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bernardini JP |
Year: |
2017 |
Journal: |
Oncogene |
Title: |
Parkin and mitophagy in cancer. |
Volume: |
36 |
Issue: |
10 |
Pages: |
1315-1327 |
|
•
•
•
•
•
|
Publication |
First Author: |
Aguirre JD |
Year: |
2017 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Structure of phosphorylated UBL domain and insights into PINK1-orchestrated parkin activation. |
Volume: |
114 |
Issue: |
2 |
Pages: |
298-303 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhang C |
Year: |
2017 |
Journal: |
J Biol Chem |
Title: |
Sorafenib targets the mitochondrial electron transport chain complexes and ATP synthase to activate the PINK1-Parkin pathway and modulate cellular drug response. |
Volume: |
292 |
Issue: |
36 |
Pages: |
15105-15120 |
|
•
•
•
•
•
|
Publication |
First Author: |
Moller A |
Year: |
2017 |
Journal: |
Hum Mol Genet |
Title: |
Amyotrophic lateral sclerosis-associated mutant SOD1 inhibits anterograde axonal transport of mitochondria by reducing Miro1 levels. |
Volume: |
26 |
Issue: |
23 |
Pages: |
4668-4679 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhang X |
Year: |
2017 |
Journal: |
FASEB J |
Title: |
Calcium/calmodulin-dependent protein kinase regulates the PINK1/Parkin and DJ-1 pathways of mitophagy during sepsis. |
Volume: |
31 |
Issue: |
10 |
Pages: |
4382-4395 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bertolin G |
Year: |
2015 |
Journal: |
Cell Death Differ |
Title: |
Parkin maintains mitochondrial levels of the protective Parkinson's disease-related enzyme 17-β hydroxysteroid dehydrogenase type 10. |
Volume: |
22 |
Issue: |
10 |
Pages: |
1563-76 |
|
•
•
•
•
•
|
Publication |
First Author: |
Verma M |
Year: |
2020 |
Journal: |
J Biol Chem |
Title: |
Chronic treatment with the complex I inhibitor MPP+ depletes endogenous PTEN-induced kinase 1 (PINK1) via up-regulation of Bcl-2-associated athanogene 6 (BAG6). |
Volume: |
295 |
Issue: |
23 |
Pages: |
7865-7876 |
|
•
•
•
•
•
|
Publication |
First Author: |
Liu Z |
Year: |
2022 |
Journal: |
Redox Biol |
Title: |
XBP1 deficiency promotes hepatocyte pyroptosis by impairing mitophagy to activate mtDNA-cGAS-STING signaling in macrophages during acute liver injury. |
Volume: |
52 |
|
Pages: |
102305 |
|
•
•
•
•
•
|
Publication |
First Author: |
Xu WN |
Year: |
2023 |
Journal: |
Int J Biol Sci |
Title: |
Sesn2 Serves as a Regulator between Mitochondrial Unfolded Protein Response and Mitophagy in Intervertebral Disc Degeneration. |
Volume: |
19 |
Issue: |
2 |
Pages: |
571-592 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhou X |
Year: |
2023 |
Journal: |
Front Pharmacol |
Title: |
Evaluation of therapeutic effects of tetramethylpyrazine nitrone in Alzheimer's disease mouse model and proteomics analysis. |
Volume: |
14 |
|
Pages: |
1082602 |
|
•
•
•
•
•
|
Publication |
First Author: |
Simonovitch S |
Year: |
2019 |
Journal: |
J Alzheimers Dis |
Title: |
The Effects of APOE4 on Mitochondrial Dynamics and Proteins in vivo. |
Volume: |
70 |
Issue: |
3 |
Pages: |
861-875 |
|
•
•
•
•
•
|
Publication |
First Author: |
Roca-Agujetas V |
Year: |
2021 |
Journal: |
Mol Neurodegener |
Title: |
Cholesterol alters mitophagy by impairing optineurin recruitment and lysosomal clearance in Alzheimer's disease. |
Volume: |
16 |
Issue: |
1 |
Pages: |
15 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yazdani HO |
Year: |
2019 |
Journal: |
Cancer Res |
Title: |
Neutrophil Extracellular Traps Drive Mitochondrial Homeostasis in Tumors to Augment Growth. |
Volume: |
79 |
Issue: |
21 |
Pages: |
5626-5639 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chi HC |
Year: |
2017 |
Journal: |
Oncogene |
Title: |
Thyroid hormone protects hepatocytes from HBx-induced carcinogenesis by enhancing mitochondrial turnover. |
Volume: |
36 |
Issue: |
37 |
Pages: |
5274-5284 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lai YC |
Year: |
2015 |
Journal: |
EMBO J |
Title: |
Phosphoproteomic screening identifies Rab GTPases as novel downstream targets of PINK1. |
Volume: |
34 |
Issue: |
22 |
Pages: |
2840-61 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lee HS |
Year: |
2024 |
Journal: |
Thyroid |
Title: |
Mitophagy Defects Exacerbate Inflammation and Aberrant Proliferation in Lymphocytic Thyroiditis. |
Volume: |
34 |
Issue: |
11 |
Pages: |
1401-1413 |
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Publication |
First Author: |
Araya J |
Year: |
2019 |
Journal: |
Autophagy |
Title: |
PRKN-regulated mitophagy and cellular senescence during COPD pathogenesis. |
Volume: |
15 |
Issue: |
3 |
Pages: |
510-526 |
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Publication |
First Author: |
Livingston MJ |
Year: |
2019 |
Journal: |
Autophagy |
Title: |
Clearance of damaged mitochondria via mitophagy is important to the protective effect of ischemic preconditioning in kidneys. |
Volume: |
15 |
Issue: |
12 |
Pages: |
2142-2162 |
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