Type |
Details |
Score |
Publication |
First Author: |
Tang ZZ |
Year: |
2009 |
Journal: |
Mol Cell Biol |
Title: |
Developmental control of CaV1.2 L-type calcium channel splicing by Fox proteins. |
Volume: |
29 |
Issue: |
17 |
Pages: |
4757-65 |
|
•
•
•
•
•
|
Publication |
First Author: |
Han J |
Year: |
2011 |
Journal: |
Mol Cell Biol |
Title: |
SR proteins induce alternative exon skipping through their activities on the flanking constitutive exons. |
Volume: |
31 |
Issue: |
4 |
Pages: |
793-802 |
|
•
•
•
•
•
|
Publication |
First Author: |
Weyn-Vanhentenryck SM |
Year: |
2018 |
Journal: |
Nat Commun |
Title: |
Precise temporal regulation of alternative splicing during neural development. |
Volume: |
9 |
Issue: |
1 |
Pages: |
2189 |
|
•
•
•
•
•
|
Publication |
First Author: |
Parras A |
Year: |
2018 |
Journal: |
Nature |
Title: |
Autism-like phenotype and risk gene mRNA deadenylation by CPEB4 mis-splicing. |
Volume: |
560 |
Issue: |
7719 |
Pages: |
441-446 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kurrasch DM |
Year: |
2007 |
Journal: |
J Neurosci |
Title: |
The neonatal ventromedial hypothalamus transcriptome reveals novel markers with spatially distinct patterning. |
Volume: |
27 |
Issue: |
50 |
Pages: |
13624-34 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhang X |
Year: |
2016 |
Journal: |
Cell |
Title: |
Cell-Type-Specific Alternative Splicing Governs Cell Fate in the Developing Cerebral Cortex. |
Volume: |
166 |
Issue: |
5 |
Pages: |
1147-1162.e15 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kalsotra A |
Year: |
2008 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart. |
Volume: |
105 |
Issue: |
51 |
Pages: |
20333-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hammock EA |
Year: |
2010 |
Journal: |
Neural Dev |
Title: |
Homologs of genes expressed in Caenorhabditis elegans GABAergic neurons are also found in the developing mouse forebrain. |
Volume: |
5 |
|
Pages: |
32 |
|
•
•
•
•
•
|
Publication |
First Author: |
Thiagarajan RD |
Year: |
2011 |
Journal: |
PLoS One |
Title: |
Identification of anchor genes during kidney development defines ontological relationships, molecular subcompartments and regulatory pathways. |
Volume: |
6 |
Issue: |
2 |
Pages: |
e17286 |
|
•
•
•
•
•
|
Publication |
First Author: |
McKee AE |
Year: |
2005 |
Journal: |
BMC Dev Biol |
Title: |
A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain. |
Volume: |
5 |
|
Pages: |
14 |
|
•
•
•
•
•
|
HT Experiment |
|
Experiment Type: |
RNA-Seq |
Study Type: |
WT vs. Mutant |
Source: |
GEO |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information Editorial Staff Collaboration |
Year: |
2001 |
|
Title: |
LocusLink Collaboration |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Bedogni F |
Year: |
2021 |
Journal: |
Front Mol Neurosci |
Title: |
Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. |
Volume: |
14 |
|
Pages: |
686034 |
|
•
•
•
•
•
|
Publication |
First Author: |
International Knockout Mouse Consortium |
Year: |
2014 |
Journal: |
Database Download |
Title: |
MGI download of modified allele data from IKMC and creation of new knockout alleles |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
International Mouse Strain Resource |
Year: |
2014 |
Journal: |
Database Download |
Title: |
MGI download of germline transmission data for alleles from IMSR strain data |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Wellcome Trust Sanger Institute |
Year: |
2009 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the KOMP project by the Wellcome Trust Sanger Institute |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GUDMAP Consortium |
Year: |
2004 |
Journal: |
www.gudmap.org |
Title: |
GUDMAP: the GenitoUrinary Development Molecular Anatomy Project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC) |
Year: |
2014 |
Journal: |
Database Release |
Title: |
Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2003 |
|
Title: |
MGI Sequence Curation Reference |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
Adams DJ |
Year: |
2024 |
Journal: |
Nature |
Title: |
Genetic determinants of micronucleus formation in vivo. |
Volume: |
627 |
Issue: |
8002 |
Pages: |
130-136 |
|
•
•
•
•
•
|
Publication |
First Author: |
MGD Nomenclature Committee |
Year: |
1995 |
|
Title: |
Nomenclature Committee Use |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Skarnes WC |
Year: |
2011 |
Journal: |
Nature |
Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
Volume: |
474 |
Issue: |
7351 |
Pages: |
337-42 |
|
•
•
•
•
•
|
Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
|
Title: |
GemPharmatech Website. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Diez-Roux G |
Year: |
2011 |
Journal: |
PLoS Biol |
Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Volume: |
9 |
Issue: |
1 |
Pages: |
e1000582 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
MGI Genome Annotation Group and UniGene Staff |
Year: |
2015 |
Journal: |
Database Download |
Title: |
MGI-UniGene Interconnection Effort |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
|
Title: |
Annotation inferences using phylogenetic trees |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Klinck R |
Year: |
2014 |
Journal: |
PLoS One |
Title: |
RBFOX1 cooperates with MBNL1 to control splicing in muscle, including events altered in myotonic dystrophy type 1. |
Volume: |
9 |
Issue: |
9 |
Pages: |
e107324 |
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
GSE32073 |
Experiment Type: |
transcription profiling by array |
Study Type: |
Baseline |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
Publication |
First Author: |
Kim KK |
Year: |
2009 |
Journal: |
J Biol Chem |
Title: |
Identification of neuronal nuclei (NeuN) as Fox-3, a new member of the Fox-1 gene family of splicing factors. |
Volume: |
284 |
Issue: |
45 |
Pages: |
31052-61 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shibata H |
Year: |
2000 |
Journal: |
Hum Mol Genet |
Title: |
A novel protein with RNA-binding motifs interacts with ataxin-2. |
Volume: |
9 |
Issue: |
9 |
Pages: |
1303-13 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kuroyanagi H |
Year: |
2009 |
Journal: |
Cell Mol Life Sci |
Title: |
Fox-1 family of RNA-binding proteins. |
Volume: |
66 |
Issue: |
24 |
Pages: |
3895-907 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhang C |
Year: |
2008 |
Journal: |
Genes Dev |
Title: |
Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2. |
Volume: |
22 |
Issue: |
18 |
Pages: |
2550-63 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
This entry represents the RNA recognition motif (RRM) of the C. elegans RNA binding protein Fox (feminizing locus on X)-1 and its homologues. The Fox-1 family proteins are evolutionarilyconserved regulators of tissue-specific alternative splicing in metazoans []. They bind specifically to an RNA element, UGCAUG []. In mammals, there are three Fox-1 homologues, RBFOX1-3 (RNA binding protein Fox-1 homologue 1-3). RBFOX1 is predominantly expressed in neurons, skeletal muscle and heart []. RBFOX1 binds to the C terminus of ataxin-2 and forms an ataxin-2/A2BP1 complex involved in RNA processing []. RBFOX2 is expressed in ovary, whole embryo, and human embryonic cell lines in addition to neurons and muscle []. RBFOX2 activates splicing of neuron-specific exons []. RBFOX3 is a nuclear RNA-binding protein that regulates alternative splicing of the RBFOX2 pre-mRNA, producing a message encoding a dominant negative form of the RBFOX2 protein. Its message is detected exclusively in post-mitotic regions of embryonic brain []. RBFOX3 modulates brain and muscle-specific splicing of exon EIIIB of fibronectin, exon N1 of c-src, and calcitonin/CGRP []. Members in this family harbour one RNA recognition motif (RRM). |
|
•
•
•
•
•
|
Publication |
First Author: |
Olmos V |
Year: |
2024 |
Journal: |
Hum Mol Genet |
Title: |
Dysregulation of alternative splicing in spinocerebellar ataxia type 1. |
Volume: |
33 |
Issue: |
2 |
Pages: |
138-149 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
169
|
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
275
|
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
449
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
374
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
396
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
303
|
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
349
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
396
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
289
|
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
300
|
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
358
|
Fragment?: |
false |
|
•
•
•
•
•
|