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Search results 101 to 178 out of 178 for Cstf3

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Type Details Score
Publication
12904583 | J:85162
First Author: Hansen J
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome.
Volume: 100
Issue: 17
Pages: 9918-22
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Publication
17967808 | J:152068
First Author: Friedel RH
Year: 2007
Journal: Brief Funct Genomic Proteomic
Title: EUCOMM--the European conditional mouse mutagenesis program.
Volume: 6
Issue: 3
Pages: 180-5
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Publication
- | J:80155
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations for FANTOM2 data
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Publication
12520002 | J:91812
First Author: Stryke D
Year: 2003
Journal: Nucleic Acids Res
Title: BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.
Volume: 31
Issue: 1
Pages: 278-81
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Publication
- | J:204739
     
First Author: International Knockout Mouse Consortium
Year: 2014
Journal: Database Download
Title: MGI download of modified allele data from IKMC and creation of new knockout alleles
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Publication
- | J:204812
     
First Author: International Mouse Strain Resource
Year: 2014
Journal: Database Download
Title: MGI download of germline transmission data for alleles from IMSR strain data
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Publication
- | J:211773
     
First Author: Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC)
Year: 2014
Journal: Database Release
Title: Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database
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Publication
18799693 | J:142754
First Author: Hansen GM
Year: 2008
Journal: Genome Res
Title: Large-scale gene trapping in C57BL/6N mouse embryonic stem cells.
Volume: 18
Issue: 10
Pages: 1670-9
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Publication
- | J:157065
     
First Author: Helmholtz Zentrum Muenchen GmbH
Year: 2010
Journal: MGI Direct Data Submission
Title: Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu)
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Publication
- | J:85000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Title: MGI Sequence Curation Reference
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Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
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Publication
38355793 | J:345621
First Author: Adams DJ
Year: 2024
Journal: Nature
Title: Genetic determinants of micronucleus formation in vivo.
Volume: 627
Issue: 8002
Pages: 130-136
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Publication
14610273 | J:86696
First Author: Zambrowicz BP
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
Volume: 100
Issue: 24
Pages: 14109-14
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Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
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Publication
- | J:141210
     
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
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Publication
- | J:342605
       
First Author: GOA curators
Year: 2016
Title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
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Publication
- | J:68900
     
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
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Publication
- | J:164563
       
First Author: The Gene Ontology Consortium
Year: 2010
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
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Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
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Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
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Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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Protein
Q8CE71
Organism: Mus musculus/domesticus
Length: 105  
Fragment?: false
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Publication
36444304 | J:334223
First Author: Min Z
Year: 2022
Journal: iScience
Title: Chromodomain helicase DNA-binding domain 2 maintains spermatogonial self-renewal by promoting chromatin accessibility and mRNA stability.
Volume: 25
Issue: 12
Pages: 105552
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Publication
8436295 | -
First Author: Mitchelson A
Year: 1993
Journal: Genes Dev
Title: Homology with Saccharomyces cerevisiae RNA14 suggests that phenotypic suppression in Drosophila melanogaster by suppressor of forked occurs at the level of RNA stability.
Volume: 7
Issue: 2
Pages: 241-9
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Publication
19965720 | -
First Author: Liu F
Year: 2010
Journal: Science
Title: Targeted 3' processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing.
Volume: 327
Issue: 5961
Pages: 94-7
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Protein Domain
IPR045243 | Rna14-like
Type: Family
Description: This entry includes Rna14 from yeasts, protein suppressor of forked (su(f)) from Drosophila melanogaster, CSTF3 from animals and CstF77 from Arabidopsis. In budding yeasts, Rna14 is part of the cleavage factor I A (CF IA) complex and is required for both the cleavage and polyadenylation activities of CF IA []. Protein suppressor of forked may have similar function [, ]. CstF77 is involved in floral repressor gene (FLC) silencing [].
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Publication
9826695 | -
First Author: Audibert A
Year: 1998
Journal: Proc Natl Acad Sci U S A
Title: Autoregulation at the level of mRNA 3' end formation of the suppressor of forked gene of Drosophila melanogaster is conserved in Drosophila virilis.
Volume: 95
Issue: 24
Pages: 14302-7
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Publication
9478129 | -
First Author: Preker PJ
Year: 1998
Journal: Trends Biochem Sci
Title: The HAT helix, a repetitive motif implicated in RNA processing.
Volume: 23
Issue: 1
Pages: 15-6
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Publication
17178401 | -
First Author: Edenfeld G
Year: 2006
Journal: Neuron
Title: The splicing factor crooked neck associates with the RNA-binding protein HOW to control glial cell maturation in Drosophila.
Volume: 52
Issue: 6
Pages: 969-80
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Publication
15994330 | -
First Author: Chan SP
Year: 2005
Journal: J Biol Chem
Title: The Prp19-associated complex is required for specifying interactions of U5 and U6 with pre-mRNA during spliceosome activation.
Volume: 280
Issue: 35
Pages: 31190-9
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Publication
15918885 | -
First Author: Sane AP
Year: 2005
Journal: Plant J
Title: The nuclear gene HCF107 encodes a membrane-associated R-TPR (RNA tetratricopeptide repeat)-containing protein involved in expression of the plastidial psbH gene in Arabidopsis.
Volume: 42
Issue: 5
Pages: 720-30
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Publication
23874216 | -
First Author: Luo W
Year: 2013
Journal: PLoS Genet
Title: The conserved intronic cleavage and polyadenylation site of CstF-77 gene imparts control of 3' end processing activity through feedback autoregulation and by U1 snRNP.
Volume: 9
Issue: 7
Pages: e1003613
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Publication
19515729 | -
First Author: Champion EA
Year: 2009
Journal: Protein Eng Des Sel
Title: A structural model for the HAT domain of Utp6 incorporating bioinformatics and genetics.
Volume: 22
Issue: 7
Pages: 431-9
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Publication
18725399 | -
First Author: Champion EA
Year: 2008
Journal: Mol Cell Biol
Title: A direct interaction between the Utp6 half-a-tetratricopeptide repeat domain and a specific peptide in Utp21 is essential for efficient pre-rRNA processing.
Volume: 28
Issue: 21
Pages: 6547-56
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Protein Domain
IPR003107 | HAT
Type: Repeat
Description: The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The HAT motif has striking structural similarities to HEAT repeats (), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats. Some studies have suggested that the HAT repeats may be involved in protein-protein interactions [, ]. However, the HAT repeats of Arabidopsis HCF107 protein have been shown to bind RNA []. Proteins containing this domain includes:Crooked neck (Crn) from Drosophila. It associates with the RNA-binding protein HOW to control glial cell maturation []. Clf1, Prp6 and Prp39 from S. cerevisiae. Clf1 is part of the of the NineTeen Complex (NTC) that stabilises U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs [, ]. Prp6 and Prp39 are involved in pre-mRNA splicing.Cleavage stimulation factor subunit 3 (CSTF3 or CstF-77) and crooked neck-like protein 1 (CRNKL1) from mammals. CSTF3 is required for polyadenylation and 3'-end cleavage of mammalian pre-mRNAs []. Protein high chlorophyll fluorescent 107 (HCF107) from Arabidopsis. HCF107 exhibits sequence-specific RNA binding and RNA remodeling activities, probably leading to the activation of translation of the target gene cluster psbB-psbT-psbH-petB-petD []. It blocks 5'-3' and 3'-5' exoribonucleases (e.g. polynucleotide phosphorylase (PNPase), RNase R) in vitro []. It is necessary for intercistronic RNA processing of the psbH 5' untranslated region or the stabilization of 5' processed psbH RNAs and is also required for the synthesis of psbB [, , ].
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Publication
12509417 | -
First Author: Wang Q
Year: 2003
Journal: J Biol Chem
Title: The Clf1p splicing factor promotes spliceosome assembly through N-terminal tetratricopeptide repeat contacts.
Volume: 278
Issue: 10
Pages: 7875-83
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Publication
22451905 | -
First Author: Hammani K
Year: 2012
Journal: Proc Natl Acad Sci U S A
Title: RNA binding and RNA remodeling activities of the half-a-tetratricopeptide (HAT) protein HCF107 underlie its effects on gene expression.
Volume: 109
Issue: 15
Pages: 5651-6
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Publication
11549768 | -
First Author: Felder S
Year: 2001
Journal: Plant Cell
Title: The nucleus-encoded HCF107 gene of Arabidopsis provides a link between intercistronic RNA processing and the accumulation of translation-competent psbH transcripts in chloroplasts.
Volume: 13
Issue: 9
Pages: 2127-41
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Protein
Q99LI7
Organism: Mus musculus/domesticus
Length: 717  
Fragment?: false
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Protein
Q3TXN6
Organism: Mus musculus/domesticus
Length: 715  
Fragment?: true
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Protein
Q8K2Z2
Organism: Mus musculus/domesticus
Length: 665  
Fragment?: false
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Protein
A0A1Y7VM45
Organism: Mus musculus/domesticus
Length: 208  
Fragment?: true
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Protein
Q3TV86
Organism: Mus musculus/domesticus
Length: 293  
Fragment?: true
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Protein
A0PJ46
Organism: Mus musculus/domesticus
Length: 426  
Fragment?: true
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Protein
E9QJV4
Organism: Mus musculus/domesticus
Length: 665  
Fragment?: false
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Protein
Q80XC6
Organism: Mus musculus/domesticus
Length: 1172  
Fragment?: false
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Protein
P63154
Organism: Mus musculus/domesticus
Length: 690  
Fragment?: false
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Protein
Q8VCY6
Organism: Mus musculus/domesticus
Length: 597  
Fragment?: false
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Protein
Q9DCD2
Organism: Mus musculus/domesticus
Length: 855  
Fragment?: false
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Protein
Q3UV71
Organism: Mus musculus/domesticus
Length: 942  
Fragment?: false
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Protein
F6TM12
Organism: Mus musculus/domesticus
Length: 285  
Fragment?: true
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Protein
Q3TE84
Organism: Mus musculus/domesticus
Length: 446  
Fragment?: false
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Protein
Q8R187
Organism: Mus musculus/domesticus
Length: 174  
Fragment?: false
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Protein
Q3UKP5
Organism: Mus musculus/domesticus
Length: 855  
Fragment?: false
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Protein
Q8K082
Organism: Mus musculus/domesticus
Length: 515  
Fragment?: true
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Publication
11344258 | -
First Author: Gross S
Year: 2001
Journal: Proc Natl Acad Sci U S A
Title: Five subunits are required for reconstitution of the cleavage and polyadenylation activities of Saccharomyces cerevisiae cleavage factor I.
Volume: 98
Issue: 11
Pages: 6080-5
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Protein
Q6NS46
Organism: Mus musculus/domesticus
Length: 1862  
Fragment?: false
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Protein
Q91YR7
Organism: Mus musculus/domesticus
Length: 941  
Fragment?: false
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Protein
B2RT41
Organism: Mus musculus/domesticus
Length: 1992  
Fragment?: false
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Protein
Q6P7T8
Organism: Mus musculus/domesticus
Length: 1014  
Fragment?: true
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Protein
Q6A049
Organism: Mus musculus/domesticus
Length: 1638  
Fragment?: true
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Protein
Q9JLI8
Organism: Mus musculus/domesticus
Length: 962  
Fragment?: false
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Publication
11042159 | J:68323
First Author: Carninci P
Year: 2000
Journal: Genome Res
Title: Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes.
Volume: 10
Issue: 10
Pages: 1617-30
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Publication
10349636 | J:80645
 
First Author: Carninci P
Year: 1999
Journal: Methods Enzymol
Title: High-efficiency full-length cDNA cloning.
Volume: 303
Pages: 19-44
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Publication
11076861 | J:68324
First Author: Shibata K
Year: 2000
Journal: Genome Res
Title: RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer.
Volume: 10
Issue: 11
Pages: 1757-71
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Publication
16141073 | -
First Author: Katayama S
Year: 2005
Journal: Science
Title: Antisense transcription in the mammalian transcriptome.
Volume: 309
Issue: 5740
Pages: 1564-6
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Publication
15489334 | -
First Author: Gerhard DS
Year: 2004
Journal: Genome Res
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
Volume: 14
Issue: 10B
Pages: 2121-7
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MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

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