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Category: HTExperiment
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Type Details Score
HT Experiment
GSE102580 | A single cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE185862 | A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE112415 | A network of noncoding regulatory RNAs acts in the mammalian brain I
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE112634 | A network of noncoding regulatory RNAs acts in the mammalian brain II
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE124008 | A reference map of cardiac transcription factor chromatin occupancy identifies dynamic and conserved transcriptional enhancers
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE220601 | Effect of Sclerostin Inactivation in a Mouse Model of Severe Dominant Osteogenesis Imperfecta
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE153817 | Epigenetic hallmarks of age-related macular degeneration are recapitulated in a photosensitive mouse model
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE107727 | A single cell hematopoietic landscape resolves 8 lineage trajectories and defects in Kit mutant mice
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
E-GEOD-64798 | Transcriptome analysis of lungs from six different mouse strains after infection with highly pathogenic H5N1 influenza A virus [set 1]
Series Id: GSE64798
Experiment Type: transcription profiling by array
Study Type: Baseline
Source: ArrayExpress
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HT Experiment
E-GEOD-35139 | Congenic dissection of a major QTL for methamphetamine sensitivity implicates epistasis
Series Id: GSE35139
Experiment Type: transcription profiling by array
Study Type: Baseline
Source: ArrayExpress
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HT Experiment
E-GEOD-33157 | Sarcolipin is a potential biomarker for dystrophy and is involved in inflammatory processes in skeletal muscles
Series Id: GSE33157
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
E-GEOD-25306 | Gene expression profiling of skeletal muscles treated with a soluble activin type IIB receptor
Series Id: GSE25306
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
E-GEOD-65353 | Gene expression of livers from Lpcat3fl/fl and Lpcat3fl/fl Albumin-Cre mice on a western diet
Series Id: GSE65353
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
GSE125683 | The Firre locus produces a trans-acting RNA molecule that functions in hematopoiesis
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE214014 | Kruppel-like factor 2 in VCAM1+ endothelial cells is a critical regulator of vascular inflammation
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE136225 | A novel lymphoid-primed progenitor marked by Dach1 downregulation identified with single cell multi-omics
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE190713 | Definition of a mouse microglial subset that regulates neuronal development and pro-inflammatory responses in the brain
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE171581 | Establishment of a dopaminergic neuron purification system in mice for the Parkinson's disease study
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
E-MTAB-12877 | Mechanical loading and hyperosmolarity as a daily resetting cue for skeletal circadian clocks
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: ArrayExpress
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HT Experiment
GSE253345 | iPain identifies Senescence of Nociceptors as a therapeutical target for chronic pain treatment
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE136341 | Dach1 downregulation marks a lymphoid-primed progenitor in early haematopoiesis (2X96 cells)
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
E-MTAB-5800 | RNA-seq of organ of Corti RNA from mice carrying a null allele of Mir183 and Mir96
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
GSE49233 | A Unifying Model for Molecular Determinants of the Pre-selection Vb Repertoire [RNA-Seq]
Series Id: E-GEOD-49233
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE144837 | PDGFRbeta+ cells play a dual role as hematopoietic precursors and niche cells during mouse ontogeny
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE231440 | Cell-specific and shared regulatory elements control a multi-gene locus active in mammary and salivary glands [RNA-Seq]
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
E-GEOD-30247 | High Fat Diet Triggers SIRT1 Cleavage in Adipose Tissue Providing a Link between Dietary Stress and Metabolic Dysfunction
Series Id: GSE30247
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
E-GEOD-60415 | The G-protein Alpha Subunit Gs alpha Is A Tumor Suppressor In Sonic Hedgehog-driven Medulloblastoma [RNA-Seq]
Series Id: GSE60415
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
E-GEOD-36427 | KLF1, KLF2 and c-myc control a regulatory network essential for embryonic erythropoiesis
Series Id: GSE36427
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
GSE208355 | HypoMap - a unified single cell gene expression atlas of the murine hypothalamus
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
E-GEOD-22653 | Deep sequencing analysis of the developing mouse brain reveals a novel microRNA
Series Id: GSE22653
Experiment Type: RNA-Seq
Study Type: Baseline
Source: ArrayExpress
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HT Experiment
GSE250277 | Cholesterol 25-hydroxylase mediates neuroinflammation and neurodegeneration in a mouse model of tauopathy
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE128890 | Identification of a mesenchymal progenitor cell hierarchy in adipose tissue (scRNA-seq)
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
E-GEOD-42761 | A key role for neuropeptide Y in lifespan extension and cancer suppression by dietary restriction
Series Id: GSE42761
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
E-MTAB-9180 | RNA-seq of intestinal crypts vs intestinal smooth muscle with a specific MMP17 deletion compared to wild-type
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
GSE128419 | A time course study by mRNA Sequencing to identify transcriptional changes in mice lung development
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE198088 | RNA-seq (SPIA-seq): Intestinal stem cell aging signature reveals a reprogramming strategy to enhance regenerative potential
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE197497 | A novel high throughput screen to identify candidate molecular networks that regulate spermatogenic stem cell functions
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE136437 | A comparison of evolutionary changes and constraints on gene regulation between fin and limb development [RNA-seq]
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE232789 | The pelvic ganglion is a divergent outpost of the sympathetic chains
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
E-GEOD-32321 | A Wnt-Bmp feedback circuit controls inter-tissue signaling dynamics in tooth organogenesis
Series Id: GSE32321
Experiment Type: transcription profiling by array
Study Type: Baseline and WT vs. Mutant
Source: ArrayExpress
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HT Experiment
GSE198137 | RNA-seq (3-prime): Intestinal stem cell aging signature reveals a reprogramming strategy to enhance regenerative potential
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE209649 | 3' droplet-based single cell RNA sequencing of a mouse large intestinal epithelium
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
E-GEOD-33674 | Preservation of cone photoreceptors after a rapid yet transient degeneration and remodeling in cone-only Nrl-/- mouse retina
Series Id: GSE33674
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
GSE254356 | Morphogenesis and regeneration share a conserved core transition cell state program that control lung epithelial cell fate
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
E-GEOD-30987 | Identification of PHLPP1 as a tumor suppressor reveals the role of feedback compensation in PTEN-mutant prostate cancer progression
Series Id: GSE30987
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
E-GEOD-43575 | A Prader-Willi locus lncRNA cloud modulates diurnal genes and energy expenditure
Series Id: GSE43575
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
E-GEOD-37359 | Genome-wide expression profiling analysis of a Sphingomyelin Synthase 1 mutant mouse model
Series Id: GSE37359
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
E-GEOD-41821 | A role for Prenylated rab acceptor 1 in vertebrate photoreceptor development
Series Id: GSE41821
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
E-GEOD-64419 | Multi-level omics analysis of dystrophin loss and therapeutic restoration in a murine model [microRNA]
Series Id: GSE64419
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
E-GEOD-44932 | A chronological expression profile of gene activity during embryonic mouse brain development
Series Id: GSE44932
Experiment Type: transcription profiling by array
Study Type: Baseline
Source: ArrayExpress
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HT Experiment
GSE120199 | A Population of Navigator Neurons is Essential for Olfactory Map Formation during Critical Period
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE94245 | Noncoding deletions reveal a gene that is critical for intestinal function
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
E-GEOD-46077 | Identification of Hipk2 as a central regulator of white fat development
Series Id: GSE46077
Experiment Type: transcription profiling by array
Study Type: Baseline
Source: ArrayExpress
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HT Experiment
GSE157983 | Developmental, cellular, and behavioral phenotypes in a mouse model of congenital hypoplasia of the dentate gyrus
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE168768 | Tbx1 regulates a cardiopharyngeal mesodermal niche in forming the heart and branchiomeric muscles [scRNA-Seq 3]
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE140779 | A mammalian Wnt5a-Ror2-angl2 axis controls the cytoskeleton and confers cellular properties required for alveologenesis
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE228531 | Hyperpolarization-Activated Cyclic Nucleotide-Gated Potassium Channel 3 Promotes HCC Development in a Female-biased Manner
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE74767 | A developmental coordinate of the spectrum of pluripotency among mice, monkeys, and humans
Series Id: E-GEOD-74767
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE239434 | A neuro-mesenchymal cell subpopulation characterises the subaortic hematopoietic stem cell niche
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE60927 | Transcriptional profiling of mouse B cell terminal differentiation defines a signature for antibody-secreting plasma cells
Series Id: E-GEOD-60927
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE44232 | Long-range bidirectional transcription is a general feature of developmental gene promoters in mammals (RNA-Seq 1)
Series Id: E-GEOD-44232
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE44575 | Long-range bidirectional transcription is a general feature of developmental gene promoters in mammals (RNA-Seq 2)
Series Id: E-GEOD-44575
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE158941 | Tbx1 regulates a cardiopharyngeal mesodermal niche in forming the heart and branchiomeric muscles [scRNA-Seq 1]
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE167491 | Tbx1 regulates a cardiopharyngeal mesodermal niche in forming the heart and branchiomeric muscles [scRNA-Seq 2]
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE186934 | Tbx1 regulates a cardiopharyngeal mesodermal niche in forming the heart and branchiomeric muscles [scRNA-Seq 4]
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE209908 | DARPP32, a target of hyperactive mTORC1 in the retinal pigment epithelium
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE121416 | A peninsular structure coordinates asynchronous differentiation with morphogenesis to generate pancreatic islets
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE108337 | Evidence against tetrapod-wide digit identities and for a limited frame shift in bird wings
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
E-GEOD-85727 | Decoding the Long Noncoding RNA during Cardiac Maturation: a Roadmap for Functional Discovery [RNA]
Series Id: GSE85727
Experiment Type: RNA-Seq
Study Type: Baseline
Source: ArrayExpress
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HT Experiment
E-GEOD-85726 | Decoding the Long Noncoding RNA during Cardiac Maturation: a Roadmap for Functional Discovery [lncRNA]
Series Id: GSE85726
Experiment Type: RNA-Seq
Study Type: Baseline
Source: ArrayExpress
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HT Experiment
E-GEOD-74683 | A dynamic unfolded protein response contributes to the control of cortical neurogenesis
Series Id: GSE74683
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
E-GEOD-57514 | Transcriptome profile of oocytes expressing a catalytically inactive knock-in allele of Ago2
Series Id: GSE57514
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
GSE122900 | Von Hippel-Lindau Acts as a Metabolic Switch Controlling Nephron Progenitor Differentiation
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE127987 | The long noncoding RNA Pnky is a trans-acting regulator of cortical development in vivo
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE139072 | Nuclear Poly(A)-binding Protein 1-like (PABPN1L) Mediates Cytoplasmic mRNA Decay As a Placeholder during Maternal-to-zygotic Transition
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE215455 | JAK2V617F-dependent clonal hematopoiesis drives vascular resident macrophages toward a pathogenic phenotype and promotes dissecting aortic aneurysm
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE123387 | A Preformed Chromatin Architecture Ensures Robust Shh Transcription during Limb Development [RNA-Seq]
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE235368 | The super-healing MRL strain promotes muscle growth in muscular dystrophy through a regenerative extracellular matrix
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE273804 | A single-cell atlas of spatial and temporal gene expression in the mouse cranial neural plate
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE270283 | BirthSeq, a new method to isolate and analyze dated cells in different vertebrates
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE246919 | A molecularly defined and spatially resolved cell atlas of the whole mouse brain [Bulk RNA sequencing]
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
E-MEXP-832 | Transcription profiling of homozygous Commd1 null mouse embryos to elucidate the underlying mechanism leading to embryonic lethality
 
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
E-GEOD-62194 | A High-Fat Diet and NAD+ Rescue Premature Aging in Cockayne Syndrome
Series Id: GSE62194
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
GSE147191 | Single Cell Transcriptomics Reveals Dysregulated Cellular and Molecular Networks in a Fragile X Syndrome Model
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE90047 | A single-cell transcriptomic analysis reveals precise pathways and regulatory mechanisms underlying hepatoblast differentiation
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE224259 | A single-cell atlas of immunocyte in spleen of a mouse model of Wiskott-Aldrich Syndrome
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE140697 | The ratio of periportal mesenchyme to ductal epithelium acts as a proliferative rheostat in liver regeneration
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE165371 | A transcriptomic atlas of mouse cerebellar cortex reveals novel cell types
 
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
GSE242445 | Deletion of FNDC5/Irisin modifies murine osteocyte function in a sex-specific manner
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
E-GEOD-45831 | EH004: Lmx1a encodes a rostral set of mesodiencephalic dopaminergic neurons marked by the Wnt/b-catenin signaling activator Rspo2
Series Id: GSE45831
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
GSE102973 | Identification of Latrophilin-2, a Specific Cell-surface Marker for Cardiac Progenitor Cells, and its Functional Significance in Heart Development [RNA-Seq]
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE198686 | Nucleoside-Diphosphate Kinase 1 and 2 are master regulators of a liver protective response to high fat diet [RNA-seq]
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
E-GEOD-20724 | Genome-wide expression analysis of mouse chromosome 2 in gonadal fat and liver tissues reveals a complex architecture of obesity
Series Id: GSE20724
Experiment Type: transcription profiling by array
Study Type: Baseline
Source: ArrayExpress
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HT Experiment
GSE143650 | A topological cluster of differentially regulated genes in mice lacking PER3
 
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: GEO
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HT Experiment
GSE46688 | F11R is a novel monocyte prognostic biomarker for malignant glioma [Seq]
Series Id: E-GEOD-46688
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
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HT Experiment
E-GEOD-11472 | Gene expression signature of cerebellum hypoplasia in a mouse model of Down syndrome (Part II)
Series Id: GSE11472
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
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HT Experiment
E-GEOD-67009 | ESRP2 Regulates A Conserved And Cell-Type-Specific Splicing Program to Support Postnatal Liver Maturation
Series Id: GSE67009
Experiment Type: RNA-Seq
Study Type: Baseline
Source: ArrayExpress
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HT Experiment
E-GEOD-49000 | SRT2104 extends survival of male mice on a standard diet and preserves bone and muscle mass
Series Id: GSE49000
Experiment Type: transcription profiling by array
Study Type: Baseline
Source: ArrayExpress
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HT Experiment
E-GEOD-55463 | Identification of a microRNA regulator for axon guidance in the olfactory bulb of adult mice
Series Id: GSE55463
Experiment Type: transcription profiling by array
Study Type: Baseline
Source: ArrayExpress
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HT Experiment
E-GEOD-3509 | Transcript copy number estimation using a mouse whole-genome oligonucleotide microarray (WGA 2.1 Spike Test)
Series Id: GSE3509
Experiment Type: transcription profiling by array
Study Type: Baseline
Source: ArrayExpress
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