Type |
Details |
Score |
GXD Expression |
Probe: |
MGI:4885270 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757723 |
Pattern: |
Regionally restricted |
Stage: |
TS23 |
Assay Id: |
MGI:4945773 |
Age: |
embryonic day 15.5 |
Image: |
g01480 E15.5 |
Note: |
Expression was region specific and scattered. |
Specimen Label: |
g01480 E15.5 |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4885270 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757728 |
Pattern: |
Widespread |
Stage: |
TS28 |
Assay Id: |
MGI:4945773 |
Age: |
postnatal day 7 |
Image: |
g01480 P7 |
|
Specimen Label: |
g01480 P7 |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4885270 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757728 |
Pattern: |
Widespread |
Stage: |
TS28 |
Assay Id: |
MGI:4945773 |
Age: |
postnatal day 42 |
Image: |
g01480 Adult |
|
Specimen Label: |
g01480 Adult |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
Publication |
First Author: |
Sultana DA |
Year: |
2009 |
Journal: |
Blood |
Title: |
Gene expression profile of the third pharyngeal pouch reveals role of mesenchymal MafB in embryonic thymus development. |
Volume: |
113 |
Issue: |
13 |
Pages: |
2976-87 |
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•
•
•
•
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Publication |
First Author: |
Vicari AP |
Year: |
1997 |
Journal: |
Immunity |
Title: |
TECK: a novel CC chemokine specifically expressed by thymic dendritic cells and potentially involved in T cell development. |
Volume: |
7 |
Issue: |
2 |
Pages: |
291-301 |
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•
•
•
•
•
|
Publication |
First Author: |
Townson JR |
Year: |
2002 |
Journal: |
Eur J Immunol |
Title: |
Characterization of mouse CCX-CKR, a receptor for the lymphocyte-attracting chemokines TECK/mCCL25, SLC/mCCL21 and MIP-3beta/mCCL19: comparison to human CCX-CKR. |
Volume: |
32 |
Issue: |
5 |
Pages: |
1230-41 |
|
•
•
•
•
•
|
Publication |
First Author: |
Desanti GE |
Year: |
2011 |
Journal: |
J Immunol |
Title: |
Clonal analysis reveals uniformity in the molecular profile and lineage potential of CCR9(+) and CCR9(-) thymus-settling progenitors. |
Volume: |
186 |
Issue: |
9 |
Pages: |
5227-35 |
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•
•
•
•
•
|
Publication |
First Author: |
Norment AM |
Year: |
2000 |
Journal: |
J Immunol |
Title: |
Murine CCR9, a chemokine receptor for thymus-expressed chemokine that is up-regulated following pre-TCR signaling. |
Volume: |
164 |
Issue: |
2 |
Pages: |
639-48 |
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•
•
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Publication |
First Author: |
Apostolaki M |
Year: |
2008 |
Journal: |
Gastroenterology |
Title: |
Role of beta7 integrin and the chemokine/chemokine receptor pair CCL25/CCR9 in modeled TNF-dependent Crohn's disease. |
Volume: |
134 |
Issue: |
7 |
Pages: |
2025-35 |
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•
•
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•
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Publication |
First Author: |
Laan M |
Year: |
2009 |
Journal: |
J Immunol |
Title: |
Autoimmune regulator deficiency results in decreased expression of CCR4 and CCR7 ligands and in delayed migration of CD4+ thymocytes. |
Volume: |
183 |
Issue: |
12 |
Pages: |
7682-91 |
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•
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Publication |
First Author: |
Stimamiglio MA |
Year: |
2010 |
Journal: |
J Leukoc Biol |
Title: |
EphB2-mediated interactions are essential for proper migration of T cell progenitors during fetal thymus colonization. |
Volume: |
88 |
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3 |
Pages: |
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•
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Publication |
First Author: |
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2016 |
Journal: |
Histochem Cell Biol |
Title: |
Eph/ephrin-B-mediated cell-to-cell interactions govern MTS20(+) thymic epithelial cell development. |
Volume: |
146 |
Issue: |
2 |
Pages: |
167-82 |
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•
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Publication |
First Author: |
Liu C |
Year: |
2006 |
Journal: |
Blood |
Title: |
Coordination between CCR7- and CCR9-mediated chemokine signals in prevascular fetal thymus colonization. |
Volume: |
108 |
Issue: |
8 |
Pages: |
2531-9 |
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•
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Publication |
First Author: |
Heinonen KM |
Year: |
2011 |
Journal: |
Blood |
Title: |
Wnt4 regulates thymic cellularity through the expansion of thymic epithelial cells and early thymic progenitors. |
Volume: |
118 |
Issue: |
19 |
Pages: |
5163-73 |
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•
•
•
•
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Publication |
First Author: |
Bleul CC |
Year: |
2000 |
Journal: |
Eur J Immunol |
Title: |
Chemokines define distinct microenvironments in the developing thymus. |
Volume: |
30 |
Issue: |
12 |
Pages: |
3371-9 |
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•
•
•
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Publication |
First Author: |
Bryson JL |
Year: |
2013 |
Journal: |
PLoS One |
Title: |
Cell-autonomous defects in thymic epithelial cells disrupt endothelial-perivascular cell interactions in the mouse thymus. |
Volume: |
8 |
Issue: |
6 |
Pages: |
e65196 |
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•
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•
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Publication |
First Author: |
Gordon J |
Year: |
2010 |
Journal: |
Dev Biol |
Title: |
Evidence for an early role for BMP4 signaling in thymus and parathyroid morphogenesis. |
Volume: |
339 |
Issue: |
1 |
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Publication |
First Author: |
Grammer C |
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2024 |
Journal: |
iScience |
Title: |
Vhl safeguards thymic epithelial cell identity and thymopoietic capacity by constraining Hif1a activity during development. |
Volume: |
27 |
Issue: |
7 |
Pages: |
110258 |
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•
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•
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Publication |
First Author: |
Itoi M |
Year: |
2007 |
Journal: |
Int Immunol |
Title: |
Mesenchymal cells are required for functional development of thymic epithelial cells. |
Volume: |
19 |
Issue: |
8 |
Pages: |
953-64 |
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•
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•
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Publication |
First Author: |
Zuklys S |
Year: |
2009 |
Journal: |
J Immunol |
Title: |
Stabilized beta-catenin in thymic epithelial cells blocks thymus development and function. |
Volume: |
182 |
Issue: |
5 |
Pages: |
2997-3007 |
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•
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Publication |
First Author: |
IUIS/WHO Subcommittee on Chemokine Nomenclature. |
Year: |
2002 |
Journal: |
J Immunol Methods |
Title: |
Chemokine/chemokine receptor nomenclature. |
Volume: |
262 |
Issue: |
1-2 |
Pages: |
1-3 |
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•
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Publication |
First Author: |
UniProt |
Year: |
2021 |
|
Title: |
Electronic Gene Ontology annotations created by ARBA machine learning models |
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•
•
•
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•
|
Publication |
First Author: |
Shanghai Model Organisms Center |
Year: |
2017 |
Journal: |
MGI Direct Data Submission |
Title: |
Information obtained from the Shanghai Model Organisms Center (SMOC), Shanghai, China |
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Publication |
First Author: |
Cobellis G |
Year: |
2005 |
Journal: |
Nucleic Acids Res |
Title: |
Tagging genes with cassette-exchange sites. |
Volume: |
33 |
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4 |
Pages: |
e44 |
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Publication |
First Author: |
European Mouse Mutant Archive |
Year: |
2003 |
Journal: |
Unpublished |
Title: |
Information obtained from the European Mouse Mutant Archive (EMMA) |
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Publication |
First Author: |
MGI and IMPC |
Year: |
2018 |
Journal: |
Database Release |
Title: |
MGI Load of Endonuclease-Mediated Alleles (CRISPR) from the International Mouse Phenotyping Consortium (IMPC) |
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Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2016 |
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Title: |
Automatic assignment of GO terms using logical inference, based on on inter-ontology links |
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Publication |
First Author: |
International Mouse Strain Resource |
Year: |
2014 |
Journal: |
Database Download |
Title: |
MGI download of germline transmission data for alleles from IMSR strain data |
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Publication |
First Author: |
Wellcome Trust Sanger Institute |
Year: |
2010 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the EUCOMM and EUCOMMTools projects by the Wellcome Trust Sanger Institute |
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Publication |
First Author: |
Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC) |
Year: |
2014 |
Journal: |
Database Release |
Title: |
Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database |
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Publication |
First Author: |
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Year: |
2008 |
Journal: |
Genome Res |
Title: |
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. |
Volume: |
18 |
Issue: |
10 |
Pages: |
1670-9 |
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Publication |
First Author: |
Helmholtz Zentrum Muenchen GmbH |
Year: |
2010 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu) |
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Publication |
First Author: |
DDB, FB, MGI, GOA, ZFIN curators |
Year: |
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Title: |
Gene Ontology annotation through association of InterPro records with GO terms |
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Year: |
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Journal: |
PLoS Biol |
Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
Volume: |
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4 |
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MGD Nomenclature Committee |
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Title: |
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Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. |
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Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI) |
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Journal: |
Database Download |
Title: |
Mouse Gene Trap Data Load from dbGSS |
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Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity |
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Mouse Genome Informatics Scientific Curators |
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Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
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Allele |
Name: |
C-C motif chemokine ligand 25; endonuclease-mediated mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Null/knockout |
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•
•
•
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•
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Strain |
Attribute String: |
coisogenic, mutant strain, endonuclease-mediated mutation |
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HT Experiment |
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E-GEOD-33268 |
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
GEO |
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Publication |
First Author: |
Agnello D |
Year: |
2013 |
Journal: |
J Immunol |
Title: |
Intrarectal immunization and IgA antibody-secreting cell homing to the small intestine. |
Volume: |
190 |
Issue: |
9 |
Pages: |
4836-47 |
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•
•
•
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Publication |
First Author: |
Elgbratt K |
Year: |
2007 |
Journal: |
Immunology |
Title: |
Aberrant T-cell ontogeny and defective thymocyte and colonic T-cell chemotactic migration in colitis-prone Galphai2-deficient mice. |
Volume: |
122 |
Issue: |
2 |
Pages: |
199-209 |
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•
•
•
•
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Publication |
First Author: |
Svensson M |
Year: |
2008 |
Journal: |
J Leukoc Biol |
Title: |
Involvement of CCR9 at multiple stages of adult T lymphopoiesis. |
Volume: |
83 |
Issue: |
1 |
Pages: |
156-64 |
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•
•
•
•
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Publication |
First Author: |
Pabst O |
Year: |
2004 |
Journal: |
J Exp Med |
Title: |
Chemokine receptor CCR9 contributes to the localization of plasma cells to the small intestine. |
Volume: |
199 |
Issue: |
3 |
Pages: |
411-6 |
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•
•
•
•
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Publication |
First Author: |
Kim SM |
Year: |
2019 |
Journal: |
FASEB J |
Title: |
Axl is a key regulator of intestinal γδ T-cell homeostasis. |
Volume: |
33 |
Issue: |
12 |
Pages: |
13386-13397 |
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•
•
•
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Publication |
First Author: |
Han J |
Year: |
2021 |
Journal: |
Front Immunol |
Title: |
High-Oxygen Submersion Fetal Thymus Organ Cultures Enable FOXN1-Dependent and -Independent Support of T Lymphopoiesis. |
Volume: |
12 |
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Pages: |
652665 |
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•
•
•
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Publication |
First Author: |
Pathak M |
Year: |
2020 |
Journal: |
Eur J Immunol |
Title: |
CCR9 signaling in dendritic cells drives the differentiation of Foxp3+ Tregs and suppresses the allergic IgE response in the gut. |
Volume: |
50 |
Issue: |
3 |
Pages: |
404-417 |
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•
•
•
•
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Publication |
First Author: |
Matti C |
Year: |
2020 |
Journal: |
J Leukoc Biol |
Title: |
CCL20 is a novel ligand for the scavenging atypical chemokine receptor 4. |
Volume: |
107 |
Issue: |
6 |
Pages: |
1137-1154 |
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•
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•
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Publication |
First Author: |
Wilhelmson AS |
Year: |
2020 |
Journal: |
Front Immunol |
Title: |
Androgen Receptors in Epithelial Cells Regulate Thymopoiesis and Recent Thymic Emigrants in Male Mice. |
Volume: |
11 |
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Pages: |
1342 |
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•
•
•
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Publication |
First Author: |
Yokoyama W |
Year: |
2014 |
Journal: |
Arthritis Res Ther |
Title: |
Abrogation of CC chemokine receptor 9 ameliorates collagen-induced arthritis of mice. |
Volume: |
16 |
Issue: |
5 |
Pages: |
445 |
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•
•
•
•
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Publication |
First Author: |
Bunting MD |
Year: |
2014 |
Journal: |
Immunol Cell Biol |
Title: |
CCR6 supports migration and differentiation of a subset of DN1 early thymocyte progenitors but is not required for thymic nTreg development. |
Volume: |
92 |
Issue: |
6 |
Pages: |
489-98 |
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•
•
•
•
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Publication |
First Author: |
Penido C |
Year: |
2008 |
Journal: |
Int Immunol |
Title: |
Involvement of CC chemokines in gammadelta T lymphocyte trafficking during allergic inflammation: the role of CCL2/CCR2 pathway. |
Volume: |
20 |
Issue: |
1 |
Pages: |
129-39 |
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•
•
•
•
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Publication |
First Author: |
Alfaro D |
Year: |
2015 |
Journal: |
J Leukoc Biol |
Title: |
EphB2 and EphB3 play an important role in the lymphoid seeding of murine adult thymus. |
Volume: |
98 |
Issue: |
6 |
Pages: |
883-96 |
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•
•
•
•
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Publication |
First Author: |
Amiya T |
Year: |
2021 |
Journal: |
Diabetologia |
Title: |
C-C motif chemokine receptor 9 regulates obesity-induced insulin resistance via inflammation of the small intestine in mice. |
Volume: |
64 |
Issue: |
3 |
Pages: |
603-617 |
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•
•
•
•
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Publication |
First Author: |
Zaballos A |
Year: |
1999 |
Journal: |
J Immunol |
Title: |
Cutting edge: identification of the orphan chemokine receptor GPR-9-6 as CCR9, the receptor for the chemokine TECK. |
Volume: |
162 |
Issue: |
10 |
Pages: |
5671-5 |
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•
•
•
•
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Publication |
First Author: |
Youn BS |
Year: |
1999 |
Journal: |
Blood |
Title: |
TECK, an efficacious chemoattractant for human thymocytes, uses GPR-9-6/CCR9 as a specific receptor. |
Volume: |
94 |
Issue: |
7 |
Pages: |
2533-6 |
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•
•
•
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Publication |
First Author: |
Carramolino L |
Year: |
2001 |
Journal: |
Blood |
Title: |
Expression of CCR9 beta-chemokine receptor is modulated in thymocyte differentiation and is selectively maintained in CD8(+) T cells from secondary lymphoid organs. |
Volume: |
97 |
Issue: |
4 |
Pages: |
850-7 |
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•
•
•
•
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Publication |
First Author: |
Honczarenko M |
Year: |
2006 |
Journal: |
Stem Cells |
Title: |
Human bone marrow stromal cells express a distinct set of biologically functional chemokine receptors. |
Volume: |
24 |
Issue: |
4 |
Pages: |
1030-41 |
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•
•
•
•
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Publication |
First Author: |
Papadakis KA |
Year: |
2000 |
Journal: |
J Immunol |
Title: |
The role of thymus-expressed chemokine and its receptor CCR9 on lymphocytes in the regional specialization of the mucosal immune system. |
Volume: |
165 |
Issue: |
9 |
Pages: |
5069-76 |
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•
•
•
•
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Publication |
First Author: |
Papadakis KA |
Year: |
2001 |
Journal: |
Gastroenterology |
Title: |
CCR9-positive lymphocytes and thymus-expressed chemokine distinguish small bowel from colonic Crohn's disease. |
Volume: |
121 |
Issue: |
2 |
Pages: |
246-54 |
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•
•
•
•
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Publication |
First Author: |
Singh S |
Year: |
2004 |
Journal: |
Clin Cancer Res |
Title: |
Expression and functional role of CCR9 in prostate cancer cell migration and invasion. |
Volume: |
10 |
Issue: |
24 |
Pages: |
8743-50 |
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Protein Domain |
Type: |
Family |
Description: |
Chemokines (chemotactic cytokines) are a family of chemoattractant molecules. They attract leukocytes to areas of inflammation and lesions, and play a key role in leukocyte activation. Originally defined as host defense proteins, chemokines are now known to play a much broader biological role []. They have a wide range of effects in many different cell types beyond the immune system, including, for example, various cells of the central nervous system [], and endothelial cells, where they may act as either angiogenic or angiostatic factors [].The chemokine family is divided into four classes based on the number and spacing of their conserved cysteines: 2 Cys residues may be adjacent (the CC family); separated by an intervening residue (the CXC family); have only one of the first two Cys residues (C chemokines); or contain both cysteines, separated by three intervening residues (CX3C chemokines).Chemokines exert their effects by binding to rhodopsin-like G protein-coupled receptors on the surface of cells. Following interaction with their specific chemokine ligands, chemokine receptors trigger a flux in intracellular calcium ions, which cause a cellular response, including the onset of chemotaxis. There are over fifty distinct chemokines and least 18 human chemokine receptors []. Although the receptors bind only a single class of chemokines, they often bind several members of the same class with high affinity. Chemokine receptors are preferentially expressed on important functional subsets of dendritic cells, monocytes and lymphocytes, including Langerhans cells and T helper cells [, ]. Chemokines and their receptors can also be subclassified into homeostatic leukocyte homing molecules (CXCR4, CXCR5, CCR7, CCR9) versus inflammatory/inducible molecules (CXCR1, CXCR2, CXCR3, CCR1-6, CX3CR1).CC chemokine receptors are a subfamily of the chemokine receptors that specifically bind and respond to cytokines of the CC chemokine family. There are currently ten members of the CC chemokine receptor subfamily, named CCR1 to 10. The receptors receptors are found in monocytes, lymphocytes, basophils and eosinophils.This entry represents CC chemokine receptor 9 (CCR9), which was previously designated as the orphan receptors GPR28 and GPR 9-6. CCR9 is expressed predominantly in the thymus, in both mature and immature T cells, and is also found in the lymph nodes, spleen, glomerular podocytes, bone marrow stromal cells and the small intestine [, , , , ]. Transfected cells expressing CCR9 receptor bind specifically to CCL25 (also known as Thymus-Expressed Chemokine) []. This interaction may play a pivotal role in T-cell migration in the thymus []. CCR9 activation has also been shown to influence cancer cell migration, invasion and matrix metallopeptidase expression, which together may affect prostate cancer metastasis []. |
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Publication |
First Author: |
Jodeleit H |
Year: |
2020 |
Journal: |
PLoS One |
Title: |
Autoantibodies as diagnostic markers and potential drivers of inflammation in ulcerative colitis. |
Volume: |
15 |
Issue: |
2 |
Pages: |
e0228615 |
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•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
369
 |
Fragment?: |
false |
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•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
357
 |
Fragment?: |
false |
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•
|