Type |
Details |
Score |
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691323 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_04 |
|
Specimen Label: |
euxassay_006857_04 |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691323 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_05 |
|
Specimen Label: |
euxassay_006857_05 |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691323 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_06 |
|
Specimen Label: |
euxassay_006857_06 |
Detected: |
true |
Specimen Num: |
5 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691323 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_07 |
|
Specimen Label: |
euxassay_006857_07 |
Detected: |
true |
Specimen Num: |
6 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691323 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_08 |
|
Specimen Label: |
euxassay_006857_08 |
Detected: |
true |
Specimen Num: |
7 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691323 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_09 |
|
Specimen Label: |
euxassay_006857_09 |
Detected: |
true |
Specimen Num: |
8 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691323 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_10 |
|
Specimen Label: |
euxassay_006857_10 |
Detected: |
true |
Specimen Num: |
9 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691323 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_11 |
|
Specimen Label: |
euxassay_006857_11 |
Detected: |
true |
Specimen Num: |
10 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691323 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_12 |
|
Specimen Label: |
euxassay_006857_12 |
Detected: |
true |
Specimen Num: |
11 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691323 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_13 |
|
Specimen Label: |
euxassay_006857_13 |
Detected: |
true |
Specimen Num: |
12 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691323 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_14 |
|
Specimen Label: |
euxassay_006857_14 |
Detected: |
true |
Specimen Num: |
13 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691323 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_15 |
|
Specimen Label: |
euxassay_006857_15 |
Detected: |
true |
Specimen Num: |
14 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691323 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_16 |
|
Specimen Label: |
euxassay_006857_16 |
Detected: |
true |
Specimen Num: |
15 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691323 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_17 |
|
Specimen Label: |
euxassay_006857_17 |
Detected: |
true |
Specimen Num: |
16 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691323 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_18 |
|
Specimen Label: |
euxassay_006857_18 |
Detected: |
true |
Specimen Num: |
17 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691323 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_19 |
|
Specimen Label: |
euxassay_006857_19 |
Detected: |
true |
Specimen Num: |
18 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691323 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_20 |
|
Specimen Label: |
euxassay_006857_20 |
Detected: |
true |
Specimen Num: |
19 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1778223 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_09 |
|
Specimen Label: |
euxassay_006857_09 |
Detected: |
true |
Specimen Num: |
8 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1778223 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_10 |
|
Specimen Label: |
euxassay_006857_10 |
Detected: |
true |
Specimen Num: |
9 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1778223 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_11 |
|
Specimen Label: |
euxassay_006857_11 |
Detected: |
true |
Specimen Num: |
10 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:674116 |
Assay Type: |
RNA in situ |
Annotation Date: |
2010-09-14 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1778223 |
Pattern: |
Uniform |
Stage: |
TS23 |
Assay Id: |
MGI:4824775 |
Age: |
embryonic day 14.5 |
Image: |
euxassay_006857_15 |
|
Specimen Label: |
euxassay_006857_15 |
Detected: |
true |
Specimen Num: |
14 |
|
•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
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Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
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Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
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Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
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Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
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Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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UniProt Feature |
Begin: |
1 |
Description: |
E3 ubiquitin-protein ligase FANCL |
Type: |
chain |
End: |
375 |
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•
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DO Term |
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Publication |
First Author: |
Gurtan AM |
Year: |
2006 |
Journal: |
J Biol Chem |
Title: |
The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. |
Volume: |
281 |
Issue: |
16 |
Pages: |
10896-905 |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
123
 |
Fragment?: |
true |
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•
•
•
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Publication |
First Author: |
Wang S |
Year: |
2021 |
Journal: |
Nat Struct Mol Biol |
Title: |
Structure of the FA core ubiquitin ligase closing the ID clamp on DNA. |
Volume: |
28 |
Issue: |
3 |
Pages: |
300-309 |
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Protein Domain |
Type: |
Domain |
Description: |
This entry represents the C-terminal domain of the FANCL, which is the E3 ubiquitin ligase subunit of the FA (Fanconi anaemia) complex [, , , ]. This entry represents the RING domain which recruits the UBE2T ubiquitin conjugating E2 enzyme as other RING E3s [, ]. |
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Publication |
First Author: |
Seki S |
Year: |
2007 |
Journal: |
Genes Cells |
Title: |
A requirement of FancL and FancD2 monoubiquitination in DNA repair. |
Volume: |
12 |
Issue: |
3 |
Pages: |
299-310 |
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•
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•
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Publication |
First Author: |
Marek LR |
Year: |
2006 |
Journal: |
DNA Repair (Amst) |
Title: |
Drosophila homologs of FANCD2 and FANCL function in DNA repair. |
Volume: |
5 |
Issue: |
11 |
Pages: |
1317-26 |
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•
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Publication |
First Author: |
Hodson C |
Year: |
2011 |
Journal: |
J Biol Chem |
Title: |
Structural analysis of human FANCL, the E3 ligase in the Fanconi anemia pathway. |
Volume: |
286 |
Issue: |
37 |
Pages: |
32628-37 |
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Interaction Experiment |
Description: |
UBE2W interacts with FANCL and regulates the monoubiquitination of fanconi anemia protein FANCD2. |
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Allele |
Name: |
Fanconi anemia, complementation group L; germ cell deficient |
Allele Type: |
Transgenic |
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•
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Protein Domain |
Type: |
Domain |
Description: |
This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL.FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex [].In humans defects in FancL are a cause of Fanconi anemia (FA) (OMIM:227650), and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair. |
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•
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Protein Domain |
Type: |
Domain |
Description: |
This entry represents the second of three UBC-like domains found in the FANCL protein, which is the catalytic E3 ubiquitin ligase subunit of the FA complex (Fanconi anaemia). Eight subunits encoded by the Fanconi anaemia gene products form a multisubunit nuclear complex which is required for mono-ubiquitination of a downstream FA protein, FANCD2 [, ]. |
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Protein Domain |
Type: |
Domain |
Description: |
This entry represents the third of three UBC-like domains found in the FANCL protein, which is the catalytic E3 ubiquitin ligase subunit of the FA complex (Fanconi anaemia). Eight subunits encoded by the Fanconi anaemia gene products form a multisubunit nuclear complex which is required for mono-ubiquitination of a downstream FA protein, FANCD2 []. |
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Protein Domain |
Type: |
Homologous_superfamily |
Description: |
This superfamily represents the third of three UBC-like domains found in the FANCL protein, which is the catalytic E3 ubiquitin ligase subunit of the FA complex (Fanconi anaemia). Structurally, it consists of 3 alpha helices and 4 beta strands.FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex [].In humans defects in FancL are a cause of Fanconi anemia (FA) (OMIM:227650), and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair. |
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Strain |
Attribute String: |
congenic, mutant strain, transgenic |
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•
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Genotype |
Symbol: |
Fancl/Fancl |
Background: |
involves: C57BL/6J * CBA/J |
Zygosity: |
hm |
Has Mutant Allele: |
true |
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•
•
•
•
•
|
Genotype |
Symbol: |
Fancl/Fancl |
Background: |
B6.Cg-Fancl/Ceb |
Zygosity: |
hm |
Has Mutant Allele: |
true |
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•
•
•
•
•
|
Genotype |
Symbol: |
Fancl/Fancl |
Background: |
involves: C57BL/6 * FVB |
Zygosity: |
hm |
Has Mutant Allele: |
true |
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•
•
•
•
•
|
Genotype |
Symbol: |
Fancl/Fancl |
Background: |
involves: C57BL/6J * CBA/J * FVB/N |
Zygosity: |
hm |
Has Mutant Allele: |
true |
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•
•
•
•
•
|
Publication |
First Author: |
Rajendra E |
Year: |
2014 |
Journal: |
Mol Cell |
Title: |
The genetic and biochemical basis of FANCD2 monoubiquitination. |
Volume: |
54 |
Issue: |
5 |
Pages: |
858-69 |
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•
•
•
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•
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Publication |
First Author: |
van Twest S |
Year: |
2017 |
Journal: |
Mol Cell |
Title: |
Mechanism of Ubiquitination and Deubiquitination in the Fanconi Anemia Pathway. |
Volume: |
65 |
Issue: |
2 |
Pages: |
247-259 |
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•
•
•
•
•
|
Genotype |
Symbol: |
Fancl/Fancl |
Background: |
involves: 129/Sv * C57BL/6 * FVB/N |
Zygosity: |
ht |
Has Mutant Allele: |
true |
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•
•
•
•
•
|
Genotype |
Symbol: |
Fancl/Fancl |
Background: |
involves: 129S7/SvEvBrd * C57BL/6J * CBA |
Zygosity: |
ht |
Has Mutant Allele: |
true |
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•
•
•
•
•
|
Genotype |
Symbol: |
Fancl/Fancl |
Background: |
involves: 129/Sv * C57BL/6 |
Zygosity: |
ht |
Has Mutant Allele: |
true |
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•
•
•
•
•
|
Publication |
First Author: |
Dorsman JC |
Year: |
2007 |
Journal: |
Cell Oncol |
Title: |
Identification of the Fanconi anemia complementation group I gene, FANCI. |
Volume: |
29 |
Issue: |
3 |
Pages: |
211-8 |
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•
•
•
•
•
|
Publication |
First Author: |
Yuan F |
Year: |
2009 |
Journal: |
J Biol Chem |
Title: |
FANCI protein binds to DNA and interacts with FANCD2 to recognize branched structures. |
Volume: |
284 |
Issue: |
36 |
Pages: |
24443-52 |
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•
•
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•
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Protein Domain |
Type: |
Family |
Description: |
Fanconi anemia complementation group I (FANCI) protein is a component of the Fanconi anemia DNA damage-response pathway []. The protein directly binds to a variety of DNA substrates []and plays an essential role in the repair of DNA double-strand breaks by homologous recombination. It is also involved in the repair of interstrand DNA cross-links (ICLs) by promoting FANCD2 monoubiquitination by FANCL [].Defects in the FANCI gene are a cause of Fanconi anemia complementation group I []- a disorder affecting all bone marrow elements and resulting in anemia, leukopenia and thrombopenia. It is associated with cardiac, renal and limb malformations, dermal pigmentary changes, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage) and defective DNA repair. |
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•
•
•
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•
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Publication |
First Author: |
van de Vrugt HJ |
Year: |
2011 |
Journal: |
DNA Repair (Amst) |
Title: |
Evidence for complete epistasis of null mutations in murine Fanconi anemia genes Fanca and Fancg. |
Volume: |
10 |
Issue: |
12 |
Pages: |
1252-61 |
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•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
111
 |
Fragment?: |
true |
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•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
78
 |
Fragment?: |
true |
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•
•
•
•
•
|
Publication |
First Author: |
Sims AE |
Year: |
2007 |
Journal: |
Nat Struct Mol Biol |
Title: |
FANCI is a second monoubiquitinated member of the Fanconi anemia pathway. |
Volume: |
14 |
Issue: |
6 |
Pages: |
564-7 |
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•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
300
 |
Fragment?: |
false |
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•
•
•
•
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