Type |
Details |
Score |
Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
|
Title: |
Annotation inferences using phylogenetic trees |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
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•
•
•
•
•
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Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
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•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
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|
|
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•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
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|
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•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Lorenz A |
Year: |
2012 |
Journal: |
Science |
Title: |
The fission yeast FANCM ortholog directs non-crossover recombination during meiosis. |
Volume: |
336 |
Issue: |
6088 |
Pages: |
1585-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Sun W |
Year: |
2008 |
Journal: |
Mol Cell |
Title: |
The FANCM ortholog Fml1 promotes recombination at stalled replication forks and limits crossing over during DNA double-strand break repair. |
Volume: |
32 |
Issue: |
1 |
Pages: |
118-28 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yan Z |
Year: |
2010 |
Journal: |
Mol Cell |
Title: |
A histone-fold complex and FANCM form a conserved DNA-remodeling complex to maintain genome stability. |
Volume: |
37 |
Issue: |
6 |
Pages: |
865-78 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
2021
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
433
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1280
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
651
 |
Fragment?: |
false |
|
•
•
•
•
•
|
DO Term |
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•
•
•
•
•
|
GO Term |
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•
•
•
•
•
|
DO Term |
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•
•
•
•
•
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Publication |
First Author: |
Coulthard R |
Year: |
2013 |
Journal: |
Structure |
Title: |
Architecture and DNA recognition elements of the Fanconi anemia FANCM-FAAP24 complex. |
Volume: |
21 |
Issue: |
9 |
Pages: |
1648-58 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
This entry represents the pseudonuclease domain (PND) from the FANCM protein []. This domain is part of the PD(D/E)XK superfamily but does not appear to have a full set of catalytic residues []. |
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•
•
•
•
•
|
Publication |
First Author: |
Ciccia A |
Year: |
2007 |
Journal: |
Mol Cell |
Title: |
Identification of FAAP24, a Fanconi anemia core complex protein that interacts with FANCM. |
Volume: |
25 |
Issue: |
3 |
Pages: |
331-43 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tao Y |
Year: |
2012 |
Journal: |
Nat Commun |
Title: |
The structure of the FANCM-MHF complex reveals physical features for functional assembly. |
Volume: |
3 |
|
Pages: |
782 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
This entry represents a structured region found in the Fanconi anemia group M protein (FANCM) that binds to a two-histone-fold-containing protein complex MHF. MHF binds double-strand DNA, stimulates the DNA-binding activity of FANCM, and contributes to the targeting of FANCM to chromatin []. |
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•
•
•
•
•
|
Publication |
First Author: |
Nandi S |
Year: |
2012 |
Journal: |
Nucleic Acids Res |
Title: |
The ATPase activity of Fml1 is essential for its roles in homologous recombination and DNA repair. |
Volume: |
40 |
Issue: |
19 |
Pages: |
9584-95 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chen YH |
Year: |
2009 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Interplay between the Smc5/6 complex and the Mph1 helicase in recombinational repair. |
Volume: |
106 |
Issue: |
50 |
Pages: |
21252-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lafuente-Barquero J |
Year: |
2017 |
Journal: |
PLoS Genet |
Title: |
The Smc5/6 complex regulates the yeast Mph1 helicase at RNA-DNA hybrid-mediated DNA damage. |
Volume: |
13 |
Issue: |
12 |
Pages: |
e1007136 |
|
•
•
•
•
•
|
Publication |
First Author: |
Pan X |
Year: |
2017 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
FANCM, BRCA1, and BLM cooperatively resolve the replication stress at the ALT telomeres. |
Volume: |
114 |
Issue: |
29 |
Pages: |
E5940-E5949 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
This entry includes a group of evolutionarily conserved ATP-dependent DNA helicases/translocases including human FANCM (Fanconi anemia group M protein) and its homologues, such as Mph1 from S. cerevisiae and Fml1/2 from S. pombe. FANCM is part of the FA complex that repair the interstrand cross-linking (ICL) lesions and coordinates activities of the downstream DNA repair pathway including nucleotide excision repair, translesion synthesis, and homologous recombination []. It also plays a critical role in the replication stress response []. Mph1 can unwind Rad51 D-loops and extended D-loops []. It has been shown to be regulated by the Smc5/6 complex [, ]. Fml1 promotes Rad51-dependent gene conversion at stalled/blocked replication forks and limits crossing over during mitotic double-strand break repair [, ]. |
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•
•
•
•
•
|
Publication |
First Author: |
Yoshinaga M |
Year: |
2022 |
Journal: |
Nat Commun |
Title: |
The N(6)-methyladenosine methyltransferase METTL16 enables erythropoiesis through safeguarding genome integrity. |
Volume: |
13 |
Issue: |
1 |
Pages: |
6435 |
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•
•
•
•
•
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Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
78
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
114
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
Centromere protein X (CENP-X) is a component of several different complexes, including the multisubunit FA complex, the heterotetrameric CENP-T-W-S-X complex and the APITD1/CENPS complex. The Fanconi anemia (FA) core complex is involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ]. Inner kinetochore subunit mhf2 is the dsDNA-binding component of the FANCM-MHF complex, important for gene conversion at blocked replication forks []and non-crossover recombination during mitosis and meiosis [].The CENP-T-W-S-X complex binds, supercoils DNA and plays an important role in kinetochore assembly [].The APITD1/CENPS complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
109
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Yimit A |
Year: |
2016 |
Journal: |
Genetics |
Title: |
MTE1 Functions with MPH1 in Double-Strand Break Repair. |
Volume: |
203 |
Issue: |
1 |
Pages: |
147-57 |
|
•
•
•
•
•
|
Publication |
First Author: |
Vinciguerra P |
Year: |
2010 |
Journal: |
J Clin Invest |
Title: |
Cytokinesis failure occurs in Fanconi anemia pathway-deficient murine and human bone marrow hematopoietic cells. |
Volume: |
120 |
Issue: |
11 |
Pages: |
3834-42 |
|
•
•
•
•
•
|
Publication |
First Author: |
Amano M |
Year: |
2009 |
Journal: |
J Cell Biol |
Title: |
The CENP-S complex is essential for the stable assembly of outer kinetochore structure. |
Volume: |
186 |
Issue: |
2 |
Pages: |
173-82 |
|
•
•
•
•
•
|
Publication |
First Author: |
Singh TR |
Year: |
2010 |
Journal: |
Mol Cell |
Title: |
MHF1-MHF2, a histone-fold-containing protein complex, participates in the Fanconi anemia pathway via FANCM. |
Volume: |
37 |
Issue: |
6 |
Pages: |
879-86 |
|
•
•
•
•
•
|
Publication |
First Author: |
Meetei AR |
Year: |
2005 |
Journal: |
Nat Genet |
Title: |
A human ortholog of archaeal DNA repair protein Hef is defective in Fanconi anemia complementation group M. |
Volume: |
37 |
Issue: |
9 |
Pages: |
958-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
Singh TR |
Year: |
2009 |
Journal: |
Blood |
Title: |
Impaired FANCD2 monoubiquitination and hypersensitivity to camptothecin uniquely characterize Fanconi anemia complementation group M. |
Volume: |
114 |
Issue: |
1 |
Pages: |
174-80 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
This entry represents the N-terminal domain of FANCM. It contains the ATP-binding region.Fanconi anemia group M (FANCM) protein is a DNA-dependent ATPase component of the Fanconi anemia (FA) core complex []. It is required for the normal activation of the FA pathway, leading to monoubiquitination of the FANCI-FANCD2 complex in response to DNA damage, cellular resistance to DNA cross-linking drugs, and prevention of chromosomal breakage []. In complex with CENPS and CENPX, it binds double-stranded DNA (dsDNA), fork-structured DNA (fsDNA), and Holliday junction substrates. Its ATP-dependent DNA branch migration activity can process branched DNA structures such as a movable replication fork. This activity is strongly stimulated in the presence of CENPS and CENPX. In complex with FAAP24, it efficiently binds to single-strand DNA (ssDNA), splayed-arm DNA, and 3'-flap substrates []. In vitro, on its own, it strongly binds ssDNA oligomers and weakly fsDNA, but does not bind to dsDNA []. FANCM is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding [, ]. |
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•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
406
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
519
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
664
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
2021
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Linder P |
Year: |
2011 |
Journal: |
Nat Rev Mol Cell Biol |
Title: |
From unwinding to clamping - the DEAD box RNA helicase family. |
Volume: |
12 |
Issue: |
8 |
Pages: |
505-16 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
401
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
221
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Schütz P |
Year: |
2010 |
Journal: |
PLoS One |
Title: |
Comparative structural analysis of human DEAD-box RNA helicases. |
Volume: |
5 |
Issue: |
9 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Nishino T |
Year: |
2012 |
Journal: |
Cell |
Title: |
CENP-T-W-S-X forms a unique centromeric chromatin structure with a histone-like fold. |
Volume: |
148 |
Issue: |
3 |
Pages: |
487-501 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bhattacharjee S |
Year: |
2017 |
Journal: |
Cell Commun Signal |
Title: |
DNA damage response and cancer therapeutics through the lens of the Fanconi Anemia DNA repair pathway. |
Volume: |
15 |
Issue: |
1 |
Pages: |
41 |
|
•
•
•
•
•
|