Type |
Details |
Score |
Publication |
First Author: |
Yanaka N |
Year: |
2003 |
Journal: |
J Biol Chem |
Title: |
Novel membrane protein containing glycerophosphodiester phosphodiesterase motif is transiently expressed during osteoblast differentiation. |
Volume: |
278 |
Issue: |
44 |
Pages: |
43595-602 |
|
•
•
•
•
•
|
Publication |
First Author: |
Nogusa Y |
Year: |
2004 |
Journal: |
Gene |
Title: |
Isolation and characterization of two serpentine membrane proteins containing glycerophosphodiester phosphodiesterase, GDE2 and GDE6. |
Volume: |
337 |
|
Pages: |
173-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Santelli E |
Year: |
2004 |
Journal: |
Proteins |
Title: |
Crystal structure of a glycerophosphodiester phosphodiesterase (GDPD) from Thermotoga maritima (TM1621) at 1.60 A resolution. |
Volume: |
56 |
Issue: |
1 |
Pages: |
167-70 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zheng B |
Year: |
2003 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
GDE1/MIR16 is a glycerophosphoinositol phosphodiesterase regulated by stimulation of G protein-coupled receptors. |
Volume: |
100 |
Issue: |
4 |
Pages: |
1745-50 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chang PA |
Year: |
2008 |
Journal: |
Mol Membr Biol |
Title: |
Isolation, characterization and molecular 3D model of human GDE4, a novel membrane protein containing glycerophosphodiester phosphodiesterase domain. |
Volume: |
25 |
Issue: |
6-7 |
Pages: |
557-66 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
This entry represents the GP-PDE domain.The glycerophosphodiester phosphodiesterases (GD-PDEs) were initiallycharacterised in bacteria, where they have functional roles for production ofmetabolic carbon and phosphate sources from glycerophosphodiesters and inadherence to and degradation of mammalian host-cell membranes. Mammalian GP-GDEs have been identified more recently and shown to be implicated in severalphysiological functions. GD-PDEs are involved in glycerol metabolism andcatalyze the reaction of glycerophosphodiester and water to alcohol andsn-glycerol-3-phosphate. They display broad specificity forglycerophosphodiesters, such as glycerophosphocholine,glycerophosphoethanolamine, glycerophosphoglycerol andbis(glycerophosphoglycerol).The GP-PDE domain adopts the ubiquitous triosephosphate isomerase (TIM) barrelalpha/beta fold. The TIM barrel iscomprised of an eight-stranded parallel β-sheet barrel surrounded by eightα-helices. There is a small insertion to the conventional TIM barrelstructure referred to as the GDPD-insertion (GDPD-I). The GDPD-I is comprisedof beta strands, α-helices (H3 and H4), and 3/10 helices. Although the TIMbarrel and a small insertion are unique for GP-PDE family, there are subtledifferences in size and topology of each domain [, ].Some proteins known to contain a GP-PDE domain are listed below:Bacterial glycerophosphoryl diester phosphodiesterase GlpQ (EC 3.1.4.46).Bacterial gylcerophosphoryl diester phosphodiesterase UgpQ (EC 3.1.4.46).Mammalian glycerophosphodiester phosphodiesterase 1 (GDE1) (EC 3.1.4.44)(or MMIR16) [], an integral membrane glycoprotein that interacts withregulator of G protein signaling proteins. It hydrolyzesglycerophosphoinositols (GPIs) producing inositol and glycerol 3-phosphate.Mammalian glycerophosphodiester phosphodiesterase domain-containing protein5 (GDPD5) (EC 3.1.-.-) (or GDE2) [].Mammalian glycerophosphoinositol inositolphosphodiesterase GDPD2 (or GDE3)(EC 3.1.4.43) [], up-regulated during osteoblast differentiation and canaffect cell morpholgy. It hydrolyzes glycerophosphoinositol (GroPIns),producing inositol 1-phosphate and glycerol.Mammalian glycerophosphodiester phosphodiesterase domain-containing protein1 (GDPD1) (EC 3.1.-.-) (or GDE4) [].Mammalian glycerophosphocholine phosphodiesterase GPCPD1 (EC 3.1.4.2) (orGDE5), selectively hydrolyzes glycerophosphocholine (GroPCho) and controlsskeletal muscle development [].Mammalian glycerophosphodiester phosphodiesterase domain-containing protein4 (GDPD4) (EC 3.1.-.-) (or GDE6) []. |
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•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
331
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
314
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
539
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
330
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
632
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
607
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
186
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
107
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
612
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
108
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
565
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Rao KN |
Year: |
2006 |
Journal: |
Proteins |
Title: |
Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens by SAD with a large asymmetric unit. |
Volume: |
65 |
Issue: |
2 |
Pages: |
514-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ballif BA |
Year: |
2008 |
Journal: |
J Proteome Res |
Title: |
Large-scale identification and evolution indexing of tyrosine phosphorylation sites from murine brain. |
Volume: |
7 |
Issue: |
1 |
Pages: |
311-8 |
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•
•
•
•
•
|
Publication |
First Author: |
Gerhard DS |
Year: |
2004 |
Journal: |
Genome Res |
Title: |
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |
Volume: |
14 |
Issue: |
10B |
Pages: |
2121-7 |
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•
•
•
•
•
|
Publication |
First Author: |
Huttlin EL |
Year: |
2010 |
Journal: |
Cell |
Title: |
A tissue-specific atlas of mouse protein phosphorylation and expression. |
Volume: |
143 |
Issue: |
7 |
Pages: |
1174-89 |
|
•
•
•
•
•
|
Publication |
First Author: |
Church DM |
Year: |
2009 |
Journal: |
PLoS Biol |
Title: |
Lineage-specific biology revealed by a finished genome assembly of the mouse. |
Volume: |
7 |
Issue: |
5 |
Pages: |
e1000112 |
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•
•
•
•
•
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