| Type |
Details |
Score |
| HT Experiment |
| Series Id: |
GSE19168 |
| Experiment Type: |
transcription profiling by array |
| Study Type: |
WT vs. Mutant |
| Source: |
ArrayExpress |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7425117 |
| Assay Type: |
RT-PCR |
| Annotation Date: |
2023-01-11 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1691019 |
|
| Stage: |
TS19 |
| Assay Id: |
MGI:7425169 |
| Age: |
embryonic day 11.5 |
| Image: |
4 |
|
| Specimen Label: |
Emx1-Cre; Magoh lox/+ |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7425119 |
| Assay Type: |
RT-PCR |
| Annotation Date: |
2023-01-11 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1691019 |
|
| Stage: |
TS19 |
| Assay Id: |
MGI:7425170 |
| Age: |
embryonic day 11.5 |
| Image: |
4 |
|
| Specimen Label: |
Emx1-Cre; Magoh lox/+ |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7425121 |
| Assay Type: |
RT-PCR |
| Annotation Date: |
2023-01-11 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1691019 |
|
| Stage: |
TS19 |
| Assay Id: |
MGI:7425171 |
| Age: |
embryonic day 11.5 |
| Image: |
S2 |
|
| Specimen Label: |
Emx1-Cre; Magoh lox/+ |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7425122 |
| Assay Type: |
RT-PCR |
| Annotation Date: |
2023-01-11 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1691019 |
|
| Stage: |
TS19 |
| Assay Id: |
MGI:7425172 |
| Age: |
embryonic day 11.5 |
| Image: |
S2 |
|
| Specimen Label: |
Emx1-Cre; Magoh lox/+ |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Singh KK |
| Year: |
2013 |
| Journal: |
RNA Biol |
| Title: |
Two mammalian MAGOH genes contribute to exon junction complex composition and nonsense-mediated decay. |
| Volume: |
10 |
| Issue: |
8 |
| Pages: |
1291-8 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Nielsen KH |
| Year: |
2009 |
| Journal: |
RNA |
| Title: |
Mechanism of ATP turnover inhibition in the EJC. |
| Volume: |
15 |
| Issue: |
1 |
| Pages: |
67-75 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Domain |
| Description: |
This entry corresponds to the RNA recognition motif of RBM8. RNA-binding protein RBM8, also termed binder of OVCA1-1 (BOV-1) or RNA-binding protein Y14, is one of the components of the exon-exon junction complex (EJC) []. It has two isoforms, RBM8A and RBM8B, both of which are identical except that RBM8B is 16 amino acids shorter at its N terminus []. RBM8, together with other EJC components (such as Magoh, Aly/REF, RNPS1, Srm160, and Upf3), plays critical roles in postsplicing processing, including nuclear export and cytoplasmic localization of the mRNA, and the nonsense-mediated mRNA decay (NMD) surveillance process. RBM8 binds to mRNA 20-24 nucleotides upstream of a spliced exon-exon junction. It is also involved in spliced mRNA nuclear export, and the process of nonsense-mediated decay of mRNAs with premature stop codons. RBM8 forms a specific heterodimer complex with the EJC protein Magoh which then associates with Aly/REF, RNPS1, DEK, and SRm160 on the spliced mRNA, and inhibits ATP turnover by eIF4AIII, thereby trapping the EJC core onto RNA [, ].RBM8 contains an N-terminal putative bipartite nuclear localization signal, one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), in the central region, and a C-terminal serine-arginine rich region (SR domain) and glycine-arginine rich region (RG domain) []. |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Salicioni AM |
| Year: |
2000 |
| Journal: |
Genomics |
| Title: |
Identification and structural analysis of human RBM8A and RBM8B: two highly conserved RNA-binding motif proteins that interact with OVCA1, a candidate tumor suppressor. |
| Volume: |
69 |
| Issue: |
1 |
| Pages: |
54-62 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Zhan X |
| Year: |
2018 |
| Journal: |
Science |
| Title: |
Structure of a human catalytic step I spliceosome. |
| Volume: |
359 |
| Issue: |
6375 |
| Pages: |
537-545 |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
174
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
171
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
174
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
125
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Lau CK |
| Year: |
2003 |
| Journal: |
Curr Biol |
| Title: |
Structure of the Y14-Magoh core of the exon junction complex. |
| Volume: |
13 |
| Issue: |
11 |
| Pages: |
933-41 |
|
•
•
•
•
•
|