Type |
Details |
Score |
Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
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•
•
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•
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Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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•
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•
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Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
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•
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•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
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•
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•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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•
•
•
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•
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DO Term |
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•
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Publication |
First Author: |
Tammachote R |
Year: |
2009 |
Journal: |
Hum Mol Genet |
Title: |
Ciliary and centrosomal defects associated with mutation and depletion of the Meckel syndrome genes MKS1 and MKS3. |
Volume: |
18 |
Issue: |
17 |
Pages: |
3311-23 |
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•
•
•
•
•
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Publication |
First Author: |
Slaats GG |
Year: |
2016 |
Journal: |
J Med Genet |
Title: |
MKS1 regulates ciliary INPP5E levels in Joubert syndrome. |
Volume: |
53 |
Issue: |
1 |
Pages: |
62-72 |
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•
•
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•
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DO Term |
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DO Term |
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Protein Domain |
Type: |
Family |
Description: |
This entry includes a group of VQ motif-containing proteins from plants, including MKS1 (VQ21, At3g18690) and VQ8/17/18/20/25 from Arabidopsis.In general, Arabidopsis VQPs interacted specifically with the C-terminal WRKY domains of group I and the sole WRKY domains of group IIc WRKY transcription factors [, ]. Arabidopsis VQPs reported to control stress responses include the calmodulin (CaM)-binding protein CamBP25 and VQ9, which regulate osmotic and salinity tolerance, respectively, the sigma factor binding proteins SIB1 and SIB2, which act as activators of WRKY33 in plant defence, and the negative regulator of the jasmonate defence pathway []. |
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Publication |
First Author: |
Roberson EC |
Year: |
2015 |
Journal: |
J Cell Biol |
Title: |
TMEM231, mutated in orofaciodigital and Meckel syndromes, organizes the ciliary transition zone. |
Volume: |
209 |
Issue: |
1 |
Pages: |
129-42 |
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•
•
•
•
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Publication |
First Author: |
Dawe HR |
Year: |
2009 |
Journal: |
J Cell Sci |
Title: |
Nesprin-2 interacts with meckelin and mediates ciliogenesis via remodelling of the actin cytoskeleton. |
Volume: |
122 |
Issue: |
Pt 15 |
Pages: |
2716-26 |
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•
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•
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Publication |
First Author: |
Hentges KE |
Year: |
2004 |
Journal: |
Mamm Genome |
Title: |
Comparative physical maps of the human and mouse Meckel syndrome critical regions. |
Volume: |
15 |
Issue: |
4 |
Pages: |
252-64 |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
204
 |
Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
561
 |
Fragment?: |
false |
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•
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
175
 |
Fragment?: |
false |
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•
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
247
 |
Fragment?: |
false |
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•
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
561
 |
Fragment?: |
false |
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|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
115
 |
Fragment?: |
false |
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•
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
118
 |
Fragment?: |
true |
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•
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
561
 |
Fragment?: |
false |
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•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
65
 |
Fragment?: |
true |
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Publication |
First Author: |
Ponsard C |
Year: |
2007 |
Journal: |
Front Biosci |
Title: |
Identification of ICIS-1, a new protein involved in cilia stability. |
Volume: |
12 |
|
Pages: |
1661-9 |
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Publication |
First Author: |
Williams CL |
Year: |
2008 |
Journal: |
Mol Biol Cell |
Title: |
Functional redundancy of the B9 proteins and nephrocystins in Caenorhabditis elegans ciliogenesis. |
Volume: |
19 |
Issue: |
5 |
Pages: |
2154-68 |
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•
•
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•
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Publication |
First Author: |
Vieillard J |
Year: |
2016 |
Journal: |
J Cell Biol |
Title: |
Transition zone assembly and its contribution to axoneme formation in Drosophila male germ cells. |
Volume: |
214 |
Issue: |
7 |
Pages: |
875-89 |
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•
•
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•
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Publication |
First Author: |
Pratt MB |
Year: |
2016 |
Journal: |
J Cell Sci |
Title: |
Drosophila sensory cilia lacking MKS proteins exhibit striking defects in development but only subtle defects in adults. |
Volume: |
129 |
Issue: |
20 |
Pages: |
3732-3743 |
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Protein Domain |
Type: |
Family |
Description: |
The C2 domain is one of the most prevalent eukaryotic lipid-binding domains deployed in diverse functional contexts. Distinct versions of the C2 domain have been recognized, the classical C2, the PI3K-type, the tensin-type, the B9-type, the DOCK-type, the NT-type and the Aida-type. Despite their limited sequence similarity, all C2 domains contain at their core a compact β-sandwich composed of two four-stranded β-sheets with highly variable inter-strand regions that might contain one or more α-helices. One feature that is highly conserved in the C2 domains is the pair of hydrophobic residues on the upper part of the β-sheet, which are involved in imparting a curvature of the sheet that allows formation of a concave ligand-binding area [].This entry represents a family of B9-type C2 domain containing proteins, found in ciliary basal body associated proteins. Although its specific function is unknown, a cilia-specific role has been suggested for the poorly characterised B9-type C2 domain [, , ].Some proteins known to contain a B9-type C2 domain are listed below:Mammalian Tectonic-like complex member MKS1 (also known as Meckel syndrome 1 , MKS1). The tectonic-like complex is localised at the transition zone of primary cilia and acts as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes. It is involved in centrosome migration to the apical cell surface during early ciliogenesis [, , ]. The homologue in Drosophila melanogaster is required for ciliary structure and function [, ]. Mammalian proteins B9D1 and B9D2. B9D1 is required for ciliogenesis and sonic hedgehog/SHH signaling [, ]. |
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•
•
•
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•
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Publication |
First Author: |
Zhang D |
Year: |
2010 |
Journal: |
Gene |
Title: |
Identification of novel families and classification of the C2 domain superfamily elucidate the origin and evolution of membrane targeting activities in eukaryotes. |
Volume: |
469 |
Issue: |
1-2 |
Pages: |
18-30 |
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•
•
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•
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Publication |
First Author: |
Cheng Y |
Year: |
2012 |
Journal: |
Plant Physiol |
Title: |
Structural and functional analysis of VQ motif-containing proteins in Arabidopsis as interacting proteins of WRKY transcription factors. |
Volume: |
159 |
Issue: |
2 |
Pages: |
810-25 |
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•
•
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•
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Publication |
First Author: |
Jing Y |
Year: |
2015 |
Journal: |
Plant Physiol |
Title: |
The VQ Motif-Containing Protein Family of Plant-Specific Transcriptional Regulators. |
Volume: |
169 |
Issue: |
1 |
Pages: |
371-8 |
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•
•
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•
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Publication |
First Author: |
Pecher P |
Year: |
2014 |
Journal: |
New Phytol |
Title: |
The Arabidopsis thaliana mitogen-activated protein kinases MPK3 and MPK6 target a subclass of 'VQ-motif'-containing proteins to regulate immune responses. |
Volume: |
203 |
Issue: |
2 |
Pages: |
592-606 |
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