| Type |
Details |
Score |
| Publication |
| First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
| Year: |
2010 |
|
| Title: |
Annotation inferences using phylogenetic trees |
|
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|
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•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
| Year: |
2000 |
| Journal: |
Database Release |
| Title: |
Entrez Gene Load |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Allen Institute for Brain Science |
| Year: |
2004 |
| Journal: |
Allen Institute |
| Title: |
Allen Brain Atlas: mouse riboprobes |
|
|
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•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2009 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
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|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
| Year: |
2010 |
| Journal: |
Database Download |
| Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Group |
| Year: |
2003 |
| Journal: |
Database Procedure |
| Title: |
Automatic Encodes (AutoE) Reference |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Bairoch A |
| Year: |
1999 |
| Journal: |
Database Release |
| Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
|
| Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics |
| Year: |
2010 |
| Journal: |
Database Release |
| Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
|
| Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2009 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
|
|
|
•
•
•
•
•
|
| HT Sample |
| Organism Name: |
mouse, laboratory |
| Sex: |
Male |
| Age: |
postnatal week 21 |
| Stage: |
28 |
| Structure . Name: |
colon |
| Notes: |
MR1 tet+ cells |
| Curation Status: |
Curated |
|
•
•
•
•
•
|
| HT Sample |
| Organism Name: |
mouse, laboratory |
| Sex: |
Male |
| Age: |
postnatal week 19 |
| Stage: |
28 |
| Structure . Name: |
colon |
| Notes: |
MR1 tet+ cells |
| Curation Status: |
Curated |
|
•
•
•
•
•
|
| HT Sample |
| Organism Name: |
mouse, laboratory |
| Sex: |
Male |
| Age: |
postnatal week 20 |
| Stage: |
28 |
| Structure . Name: |
colon |
| Notes: |
MR1 tet+ cells |
| Curation Status: |
Curated |
|
•
•
•
•
•
|
| HT Sample |
| Organism Name: |
mouse, laboratory |
| Sex: |
Male |
| Age: |
postnatal week 20 |
| Stage: |
28 |
| Structure . Name: |
colon |
| Notes: |
MR1 tet+ cells |
| Curation Status: |
Curated |
|
•
•
•
•
•
|
| HT Sample |
| Organism Name: |
mouse, laboratory |
| Sex: |
Male |
| Age: |
postnatal week 20 |
| Stage: |
28 |
| Structure . Name: |
colon |
| Notes: |
MR1 tet+ cells |
| Curation Status: |
Curated |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Walter L |
| Year: |
1998 |
| Journal: |
Immunogenetics |
| Title: |
Isolation and molecular characterization of the rat MR1 homologue, a non-MHC-linked class I-related gene. |
| Volume: |
47 |
| Issue: |
6 |
| Pages: |
477-82 |
|
•
•
•
•
•
|
| Regulatory Region |
| Type: |
TF_binding_site |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Huang S |
| Year: |
2005 |
| Journal: |
J Biol Chem |
| Title: |
Evidence for MR1 antigen presentation to mucosal-associated invariant T cells. |
| Volume: |
280 |
| Issue: |
22 |
| Pages: |
21183-93 |
|
•
•
•
•
•
|
| Allele |
| Name: |
major histocompatibility complex, class I-related; endonuclease-mediated mutation 1, Shanghai Model Organisms Center |
| Allele Type: |
Endonuclease-mediated |
| Attribute String: |
Null/knockout |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
402
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
coisogenic, mutant strain, endonuclease-mediated mutation |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Yamaguchi H |
| Year: |
2002 |
| Journal: |
Biochem Biophys Res Commun |
| Title: |
Association of MR1 protein, an MHC class I-related molecule, with beta(2)-microglobulin. |
| Volume: |
290 |
| Issue: |
2 |
| Pages: |
722-9 |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
385
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
360
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
424
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
142
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| HT Experiment |
|
| Experiment Type: |
RNA-Seq |
| Study Type: |
WT vs. Mutant |
| Source: |
ArrayExpress |
|
•
•
•
•
•
|
| HT Experiment |
|
| Experiment Type: |
RNA-Seq |
| Study Type: |
Baseline |
| Source: |
ArrayExpress |
|
•
•
•
•
•
|
| HT Experiment |
|
| Experiment Type: |
RNA-Seq |
| Study Type: |
Baseline |
| Source: |
GEO |
|
•
•
•
•
•
|
| HT Experiment |
|
| Experiment Type: |
RNA-Seq |
| Study Type: |
Baseline |
| Source: |
GEO |
|
•
•
•
•
•
|
| HT Experiment |
|
| Experiment Type: |
RNA-Seq |
| Study Type: |
Baseline |
| Source: |
GEO |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Vavassori S |
| Year: |
2013 |
| Journal: |
Nat Immunol |
| Title: |
Butyrophilin 3A1 binds phosphorylated antigens and stimulates human γδ T cells. |
| Volume: |
14 |
| Issue: |
9 |
| Pages: |
908-16 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Otani S |
| Year: |
2022 |
| Journal: |
Oncogene |
| Title: |
Runx3 is required for oncogenic Myc upregulation in p53-deficient osteosarcoma. |
| Volume: |
41 |
| Issue: |
5 |
| Pages: |
683-691 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Guo Z |
| Year: |
2001 |
| Journal: |
Transplantation |
| Title: |
CD8 T cell-mediated rejection of intestinal allografts is resistant to inhibition of the CD40/CD154 costimulatory pathway. |
| Volume: |
71 |
| Issue: |
9 |
| Pages: |
1351-4 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ma H |
| Year: |
2016 |
| Journal: |
Cell Metab |
| Title: |
Incompatibility between Nuclear and Mitochondrial Genomes Contributes to an Interspecies Reproductive Barrier. |
| Volume: |
24 |
| Issue: |
2 |
| Pages: |
283-94 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Drashansky TT |
| Year: |
2021 |
| Journal: |
iScience |
| Title: |
BCL11B is positioned upstream of PLZF and RORγt to control thymic development of mucosal-associated invariant T cells and MAIT17 program. |
| Volume: |
24 |
| Issue: |
4 |
| Pages: |
102307 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Shimamura M |
| Year: |
2007 |
| Journal: |
Eur J Immunol |
| Title: |
Modulation of Valpha19 NKT cell immune responses by alpha-mannosyl ceramide derivatives consisting of a series of modified sphingosines. |
| Volume: |
37 |
| Issue: |
7 |
| Pages: |
1836-44 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Date Y |
| Year: |
2022 |
| Journal: |
Gene |
| Title: |
Oncogenic Runx1-Myc axis in p53-deficient thymic lymphoma. |
| Volume: |
819 |
|
| Pages: |
146234 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Gorbachev AV |
| Year: |
2001 |
| Journal: |
J Immunol |
| Title: |
CD4+ and CD8+ T cell priming for contact hypersensitivity occurs independently of CD40-CD154 interactions. |
| Volume: |
166 |
| Issue: |
4 |
| Pages: |
2323-32 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Voynova E |
| Year: |
2018 |
| Journal: |
Immunohorizons |
| Title: |
Requirement for CD40/CD40L Interactions for Development of Autoimmunity Differs Depending on Specific Checkpoint and Costimulatory Pathways. |
| Volume: |
2 |
| Issue: |
1 |
| Pages: |
54-66 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Kishimoto K |
| Year: |
2000 |
| Journal: |
J Clin Invest |
| Title: |
The role of CD154-CD40 versus CD28-B7 costimulatory pathways in regulating allogeneic Th1 and Th2 responses in vivo. |
| Volume: |
106 |
| Issue: |
1 |
| Pages: |
63-72 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Wingender G |
| Year: |
2008 |
| Journal: |
Am J Physiol Gastrointest Liver Physiol |
| Title: |
Role of NKT cells in the digestive system. IV. The role of canonical natural killer T cells in mucosal immunity and inflammation. |
| Volume: |
294 |
| Issue: |
1 |
| Pages: |
G1-8 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ohyama M |
| Year: |
2003 |
| Journal: |
J Invest Dermatol |
| Title: |
Suppression of the immune response against exogenous desmoglein 3 in desmoglein 3 knockout mice: an implication for gene therapy. |
| Volume: |
120 |
| Issue: |
4 |
| Pages: |
610-5 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Kozlowska U |
| Year: |
2021 |
| Journal: |
Cells |
| Title: |
Assessment of Immunological Potential of Glial Restricted Progenitor Graft In Vivo-Is Immunosuppression Mandatory? |
| Volume: |
10 |
| Issue: |
7 |
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Prendergast GC |
| Year: |
1989 |
| Journal: |
Mol Cell Biol |
| Title: |
Posttranscriptional regulation of cellular gene expression by the c-myc oncogene. |
| Volume: |
9 |
| Issue: |
1 |
| Pages: |
124-34 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ferrant JL |
| Year: |
2004 |
| Journal: |
Int Immunol |
| Title: |
The contribution of Fc effector mechanisms in the efficacy of anti-CD154 immunotherapy depends on the nature of the immune challenge. |
| Volume: |
16 |
| Issue: |
11 |
| Pages: |
1583-94 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Vogel I |
| Year: |
2013 |
| Journal: |
Eur J Immunol |
| Title: |
Foxp3+ regulatory T cells are activated in spite of B7-CD28 and CD40-CD40L blockade. |
| Volume: |
43 |
| Issue: |
4 |
| Pages: |
1013-23 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Varelias A |
| Year: |
2018 |
| Journal: |
J Clin Invest |
| Title: |
Recipient mucosal-associated invariant T cells control GVHD within the colon. |
| Volume: |
128 |
| Issue: |
5 |
| Pages: |
1919-1936 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Johnson DN |
| Year: |
2022 |
| Journal: |
Sci Rep |
| Title: |
Differential location of NKT and MAIT cells within lymphoid tissue. |
| Volume: |
12 |
| Issue: |
1 |
| Pages: |
4034 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Lee MY |
| Year: |
2011 |
| Journal: |
PLoS One |
| Title: |
Ectodermal influx and cell hypertrophy provide early growth for all murine mammary rudiments, and are differentially regulated among them by Gli3. |
| Volume: |
6 |
| Issue: |
10 |
| Pages: |
e26242 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ujiie H |
| Year: |
2012 |
| Journal: |
Clin Immunol |
| Title: |
Noncollagenous 16A domain of type XVII collagen-reactive CD4+ T cells play a pivotal role in the development of active disease in experimental bullous pemphigoid model. |
| Volume: |
142 |
| Issue: |
2 |
| Pages: |
167-75 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Kashlan OB |
| Year: |
2003 |
| Journal: |
Biochemistry |
| Title: |
Comprehensive model for allosteric regulation of mammalian ribonucleotide reductase: refinements and consequences. |
| Volume: |
42 |
| Issue: |
6 |
| Pages: |
1696-706 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Tai PW |
| Year: |
2011 |
| Journal: |
Skelet Muscle |
| Title: |
Differentiation and fiber type-specific activity of a muscle creatine kinase intronic enhancer. |
| Volume: |
1 |
|
| Pages: |
25 |
|
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•
•
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