Type |
Details |
Score |
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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•
•
•
•
•
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Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
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•
•
•
•
•
|
Gene |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
dog, domestic |
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•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
chimpanzee |
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•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
cattle |
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•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
macaque, rhesus |
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•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
chicken |
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•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
frog, western clawed |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
614
 |
Fragment?: |
false |
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•
•
•
•
•
|
UniProt Feature |
Begin: |
1 |
Description: |
DNA endonuclease RBBP8 |
Type: |
chain |
End: |
893 |
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•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
frog, African clawed |
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•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
frog, African clawed |
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•
•
•
•
•
|
Allele |
Name: |
RBBP8 N-terminal like; wild type |
Allele Type: |
Not Specified |
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•
•
•
•
•
|
Publication |
First Author: |
Kaidi A |
Year: |
2010 |
Journal: |
Science |
Title: |
Human SIRT6 promotes DNA end resection through CtIP deacetylation. |
Volume: |
329 |
Issue: |
5997 |
Pages: |
1348-53 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kaidi A |
Year: |
2019 |
Journal: |
Science |
Title: |
Retraction. |
Volume: |
364 |
Issue: |
6437 |
Pages: |
247 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhang Y |
Year: |
2011 |
Journal: |
Nat Struct Mol Biol |
Title: |
An essential role for CtIP in chromosomal translocation formation through an alternative end-joining pathway. |
Volume: |
18 |
Issue: |
1 |
Pages: |
80-4 |
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•
•
•
•
•
|
Publication |
First Author: |
Lee-Theilen M |
Year: |
2011 |
Journal: |
Nat Struct Mol Biol |
Title: |
CtIP promotes microhomology-mediated alternative end joining during class-switch recombination. |
Volume: |
18 |
Issue: |
1 |
Pages: |
75-9 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
26
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Allele |
Name: |
RBBP8 N-terminal like; endonuclease-mediated mutation 1, Jackson |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Null/knockout |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
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Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
Mus pahari |
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•
•
•
•
•
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Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
Mus spretus |
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•
•
•
•
•
|
Allele |
Name: |
RBBP8 N-terminal like; targeted mutation 1a, Helmholtz Zentrum Muenchen GmbH |
Allele Type: |
Targeted |
Attribute String: |
Conditional ready, Null/knockout, Reporter |
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•
•
•
•
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Allele |
Name: |
RBBP8 N-terminal like; targeted mutation 1e, Helmholtz Zentrum Muenchen GmbH |
Allele Type: |
Targeted |
Attribute String: |
Null/knockout, Reporter |
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•
•
•
•
•
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Strain |
Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
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•
•
•
•
•
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Allele |
Name: |
RBBP8 N-terminal like; endonuclease-mediated mutation 3, GemPharmatech Co., Ltd |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Null/knockout |
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•
•
•
•
•
|
Genotype |
Symbol: |
Rbbp8nl/Rbbp8nl |
Background: |
C57BL/6NJ-Rbbp8nl/Mmjax |
Zygosity: |
hm |
Has Mutant Allele: |
true |
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•
•
•
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•
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Allele |
Name: |
retinoblastoma binding protein 8, endonuclease; endonuclease-mediated mutation 2, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Null/knockout |
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•
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•
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DO Term |
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•
•
•
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Strain |
Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
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•
•
•
•
•
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Allele |
Name: |
retinoblastoma binding protein 8, endonuclease; endonuclease-mediated mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Conditional ready, No functional change |
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•
•
•
•
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Strain |
Attribute String: |
coisogenic, mutant strain, endonuclease-mediated mutation |
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Protein Domain |
Type: |
Family |
Description: |
This entry includes DNA endonuclease RBBP8 from animals, Ctp1 from fission yeast and protein gamma response 1 from plants []. This entry also includes human RBBP8 N-terminal-like protein (RBBP8NL) whose function is not clear. RBBP8 is an endonuclease that cooperates with the MRE11-RAD50-NBN (MRN) complex in processing meiotic and mitotic double-strand breaks (DSBs) by ensuring both resection and intrachromosomal association of the broken ends []. Ctp1 is an endonuclease that cooperates with the MRN complex in processing meiotic and mitotic double-strand breaks by allowing the endonucleolytic removal of rec12 from the break sites and ensuring both resection and intrachromosomal association of the broken ends []. |
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Publication |
First Author: |
Deveaux Y |
Year: |
2000 |
Journal: |
Radiat Res |
Title: |
Molecular cloning and developmental expression of AtGR1, a new growth-related Arabidopsis gene strongly induced by ionizing radiation. |
Volume: |
154 |
Issue: |
4 |
Pages: |
355-64 |
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•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
614
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Limbo O |
Year: |
2007 |
Journal: |
Mol Cell |
Title: |
Ctp1 is a cell-cycle-regulated protein that functions with Mre11 complex to control double-strand break repair by homologous recombination. |
Volume: |
28 |
Issue: |
1 |
Pages: |
134-46 |
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•
•
•
•
|
Publication |
First Author: |
Clerici M |
Year: |
2006 |
Journal: |
EMBO Rep |
Title: |
The Saccharomyces cerevisiae Sae2 protein negatively regulates DNA damage checkpoint signalling. |
Volume: |
7 |
Issue: |
2 |
Pages: |
212-8 |
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•
•
•
•
•
|
Publication |
First Author: |
Clerici M |
Year: |
2005 |
Journal: |
J Biol Chem |
Title: |
The Saccharomyces cerevisiae Sae2 protein promotes resection and bridging of double strand break ends. |
Volume: |
280 |
Issue: |
46 |
Pages: |
38631-8 |
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•
•
•
•
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Publication |
First Author: |
Lengsfeld BM |
Year: |
2007 |
Journal: |
Mol Cell |
Title: |
Sae2 is an endonuclease that processes hairpin DNA cooperatively with the Mre11/Rad50/Xrs2 complex. |
Volume: |
28 |
Issue: |
4 |
Pages: |
638-51 |
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•
•
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•
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Publication |
First Author: |
Zdravković A |
Year: |
2021 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
A conserved Ctp1/CtIP C-terminal peptide stimulates Mre11 endonuclease activity. |
Volume: |
118 |
Issue: |
11 |
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•
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•
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Protein Domain |
Type: |
Domain |
Description: |
This entry represents the C-terminal domain of the fission yeast Ctip (Ctp1) protein. Proteins containing this domain include DNA endonuclease RBBP8 (also known as CtBP-interacting protein, CtIP) from animals, protein gamma response 1 (GR1) from Arabidopsis and SAE2 from S. cerevisiae [, ]. SAE2 is a protein involved in repairing meiotic and mitotic double-strand breaks in DNA [, , ].Although proteins containing this domain were described as endonucleases, it is now known that they actually function as endonuclease activators that cooperates with the MRE11-RAD50-NBN (MRN) complex in processing meiotic and mitotic double-strand breaks (DSBs) by ensuring both resection and intrachromosomal association of the broken ends [, , ]. This domain contains highly conserved residues at its 15-residue extreme that are indispensable for MRN (Mre11-Rad50-Nbs1) complex activation, through the stimulation of Mre11 endonuclease activity []. |
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Publication |
First Author: |
The Jackson Laboratory |
Year: |
2012 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the KOMP project by The Jackson Laboratory |
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•
•
•
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•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2003 |
|
Title: |
Data Curation Using Mouse Genome Assembly |
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|
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•
•
•
•
•
|
Publication |
First Author: |
Helmholtz Zentrum Muenchen GmbH |
Year: |
2010 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu) |
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•
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Publication |
First Author: |
Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC) |
Year: |
2014 |
Journal: |
Database Release |
Title: |
Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database |
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|
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•
•
•
•
•
|
Publication |
First Author: |
Adams DJ |
Year: |
2024 |
Journal: |
Nature |
Title: |
Genetic determinants of micronucleus formation in vivo. |
Volume: |
627 |
Issue: |
8002 |
Pages: |
130-136 |
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•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Function or Process or Component Unknown following Literature Review |
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•
•
•
•
•
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Publication |
First Author: |
Gerhard DS |
Year: |
2004 |
Journal: |
Genome Res |
Title: |
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |
Volume: |
14 |
Issue: |
10B |
Pages: |
2121-7 |
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•
•
•
•
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Publication |
First Author: |
Huttlin EL |
Year: |
2010 |
Journal: |
Cell |
Title: |
A tissue-specific atlas of mouse protein phosphorylation and expression. |
Volume: |
143 |
Issue: |
7 |
Pages: |
1174-89 |
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•
•
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•
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Publication |
First Author: |
Church DM |
Year: |
2009 |
Journal: |
PLoS Biol |
Title: |
Lineage-specific biology revealed by a finished genome assembly of the mouse. |
Volume: |
7 |
Issue: |
5 |
Pages: |
e1000112 |
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