|  Help  |  About  |  Contact Us

Search our database by keyword

Examples

  • Search this entire website. Enter identifiers, names or keywords for genes, diseases, strains, ontology terms, etc. (e.g. Pax6, Parkinson, ataxia)
  • Use OR to search for either of two terms (e.g. OR mus) or quotation marks to search for phrases (e.g. "dna binding").
  • Boolean search syntax is supported: e.g. Balb* for partial matches or mus AND NOT embryo to exclude a term

Search results 101 to 193 out of 193 for Rfx1

<< First    < Previous  |  Next >    Last >>
0.024s

Categories

Hits by Category

Hits by Strain

Type Details Score
GXD Expression
GXD Expression
 
Probe: MGI:3506369
Assay Type: RNA in situ
Annotation Date: 2014-02-07
Strength: Present
Sex: Female
Emaps: EMAPS:2850023
Pattern: Not Specified
Stage: TS23
Assay Id: MGI:5539384
Age: embryonic day 15.5
Image: GUDMAP:5692
Specimen Label: GUDMAP:5692
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:3506369
Assay Type: RNA in situ
Annotation Date: 2014-02-07
Strength: Present
Sex: Female
Emaps: EMAPS:1796223
Pattern: Not Specified
Stage: TS23
Assay Id: MGI:5539384
Age: embryonic day 15.5
Image: GUDMAP:5692
Specimen Label: GUDMAP:5692
Detected: true
Specimen Num: 1
•
•
•
•
•
Publication
25058468 | J:277850
First Author: Kawase S
Year: 2014
Journal: Stem Cells Dev
Title: Regulatory factor X transcription factors control Musashi1 transcription in mouse neural stem/progenitor cells.
Volume: 23
Issue: 18
Pages: 2250-61
•
•
•
•
•
Publication
12403718 | J:80083
First Author: Dubruille R
Year: 2002
Journal: Development
Title: Drosophila regulatory factor X is necessary for ciliated sensory neuron differentiation.
Volume: 129
Issue: 23
Pages: 5487-98
•
•
•
•
•
Publication
32725242 | J:296999
First Author: Lemeille S
Year: 2020
Journal: Nucleic Acids Res
Title: Interplay of RFX transcription factors 1, 2 and 3 in motile ciliogenesis.
Volume: 48
Issue: 16
Pages: 9019-9036
•
•
•
•
•
Publication
26469318 | J:227631
 
First Author: Elkon R
Year: 2015
Journal: Nat Commun
Title: RFX transcription factors are essential for hearing in mice.
Volume: 6
Pages: 8549
•
•
•
•
•
Publication
24531968 | J:209144
First Author: Bae BI
Year: 2014
Journal: Science
Title: Evolutionarily dynamic alternative splicing of GPR56 regulates regional cerebral cortical patterning.
Volume: 343
Issue: 6172
Pages: 764-8
•
•
•
•
•
Publication
10501980 | J:57794
First Author: Carver EA
Year: 1999
Journal: Mamm Genome
Title: Physical mapping of EMR1 and CD97 in human Chromosome 19 and assignment of Cd97 to mouse Chromosome 8 suggest an ancient genomic duplication.
Volume: 10
Issue: 10
Pages: 1039-40
•
•
•
•
•
Publication
31956913 | J:291604
First Author: Li J
Year: 2020
Journal: Nucleic Acids Res
Title: Dynamic changes in cis-regulatory occupancy by Six1 and its cooperative interactions with distinct cofactors drive lineage-specific gene expression programs during progressive differentiation of the auditory sensory epithelium.
Volume: 48
Issue: 6
Pages: 2880-2896
•
•
•
•
•
Publication
9060410 | J:38910
First Author: Doyle J
Year: 1997
Journal: Mamm Genome
Title: Mutations in the Cacnl1a4 calcium channel gene are associated with seizures, cerebellar degeneration, and ataxia in tottering and leaner mutant mice.
Volume: 8
Issue: 2
Pages: 113-20
•
•
•
•
•
Publication
35087169 | J:319546
First Author: Herranz-PĂ©rez V
Year: 2022
Journal: Sci Rep
Title: Ependymoma associated protein Zfta is expressed in immature ependymal cells but is not essential for ependymal development in mice.
Volume: 12
Issue: 1
Pages: 1493
•
•
•
•
•
Publication
19887680 | J:186055
First Author: Ashique AM
Year: 2009
Journal: Sci Signal
Title: The Rfx4 transcription factor modulates Shh signaling by regional control of ciliogenesis.
Volume: 2
Issue: 95
Pages: ra70
•
•
•
•
•
Publication
30914320 | J:276848
First Author: Shimada IS
Year: 2019
Journal: Dev Biol
Title: Derepression of sonic hedgehog signaling upon Gpr161 deletion unravels forebrain and ventricular abnormalities.
Volume: 450
Issue: 1
Pages: 47-62
•
•
•
•
•
Publication
15226823 | J:93300
First Author: Blackshaw S
Year: 2004
Journal: PLoS Biol
Title: Genomic analysis of mouse retinal development.
Volume: 2
Issue: 9
Pages: E247
•
•
•
•
•
Publication
20412781 | J:140465
First Author: Guo G
Year: 2010
Journal: Dev Cell
Title: Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst.
Volume: 18
Issue: 4
Pages: 675-85
•
•
•
•
•
Publication
20059953 | J:156017
First Author: Yokoyama S
Year: 2009
Journal: Dev Cell
Title: A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58.
Volume: 17
Issue: 6
Pages: 836-48
•
•
•
•
•
Publication
17967808 | J:152068
First Author: Friedel RH
Year: 2007
Journal: Brief Funct Genomic Proteomic
Title: EUCOMM--the European conditional mouse mutagenesis program.
Volume: 6
Issue: 3
Pages: 180-5
•
•
•
•
•
Publication
15618518 | J:91257
First Author: Gray PA
Year: 2004
Journal: Science
Title: Mouse brain organization revealed through direct genome-scale TF expression analysis.
Volume: 306
Issue: 5705
Pages: 2255-7
•
•
•
•
•
Publication
- | J:80155
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations for FANTOM2 data
•
•
•
•
•
Publication
12520002 | J:91812
First Author: Stryke D
Year: 2003
Journal: Nucleic Acids Res
Title: BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.
Volume: 31
Issue: 1
Pages: 278-81
•
•
•
•
•
Publication
- | J:57656
     
First Author: Lennon G
Year: 1999
Journal: Database Download
Title: WashU-HHMI Mouse EST Project
•
•
•
•
•
Publication
- | J:171409
     
First Author: GUDMAP Consortium
Year: 2004
Journal: www.gudmap.org
Title: GUDMAP: the GenitoUrinary Development Molecular Anatomy Project
•
•
•
•
•
Publication
18799693 | J:142754
First Author: Hansen GM
Year: 2008
Journal: Genome Res
Title: Large-scale gene trapping in C57BL/6N mouse embryonic stem cells.
Volume: 18
Issue: 10
Pages: 1670-9
•
•
•
•
•
Publication
- | J:157065
     
First Author: Helmholtz Zentrum Muenchen GmbH
Year: 2010
Journal: MGI Direct Data Submission
Title: Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu)
•
•
•
•
•
Publication
- | J:72247
       
First Author: DDB, FB, MGI, GOA, ZFIN curators
Year: 2001
Title: Gene Ontology annotation through association of InterPro records with GO terms
•
•
•
•
•
Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
•
•
•
•
•
Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
•
•
•
•
•
Publication
- | J:141210
     
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
•
•
•
•
•
Publication
- | J:342605
       
First Author: GOA curators
Year: 2016
Title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
•
•
•
•
•
Publication
- | J:68900
     
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
•
•
•
•
•
Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
•
•
•
•
•
Publication
- | J:164563
       
First Author: The Gene Ontology Consortium
Year: 2010
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
•
•
•
•
•
Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
•
•
•
•
•
Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
•
•
•
•
•
Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
•
•
•
•
•
Publication
- | J:57747
     
First Author: MGI Genome Annotation Group and UniGene Staff
Year: 2015
Journal: Database Download
Title: MGI-UniGene Interconnection Effort
•
•
•
•
•
Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
•
•
•
•
•
Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
•
•
•
•
•
Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
•
•
•
•
•
Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
•
•
•
•
•
Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
•
•
•
•
•
Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
•
•
•
•
•
Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
•
•
•
•
•
Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
•
•
•
•
•
Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
•
•
•
•
•
Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
•
•
•
•
•
Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
•
•
•
•
•
Protein
A0A1B0GRV3
Organism: Mus musculus/domesticus
Length: 910  
Fragment?: false
•
•
•
•
•
Protein
G3UZZ6
Organism: Mus musculus/domesticus
Length: 71  
Fragment?: true
•
•
•
•
•
Publication
9278482 | -
First Author: Katan Y
Year: 1997
Journal: Nucleic Acids Res
Title: The transcriptional activation and repression domains of RFX1, a context-dependent regulator, can mutually neutralize their activities.
Volume: 25
Issue: 18
Pages: 3621-8
•
•
•
•
•
Protein Domain
IPR007668 | RFX1_trans_act
Type: Domain
Description: The RFX family is a family of winged-helix DNA-binding proteins. RFX1 is a regulatory factor essential for expression of MHC class II genes. This region is found N-terminal to the RFX DNA-binding region () in some mammalian RFX proteins, and is thought to activate transcription when associated with DNA. Deletion analysis has identified the region 233-351 in human RFX1 () as being required for maximal activation [].
•
•
•
•
•
Publication
10336433 | J:55361
First Author: Liu M
Year: 1999
Journal: J Biol Chem
Title: Involvement of RFX1 protein in the regulation of the human proliferating cell nuclear antigen promoter.
Volume: 274
Issue: 22
Pages: 15433-9
•
•
•
•
•
UniProt Feature
UniProt Feature
Begin: 1
Description: MHC class II regulatory factor RFX1
Type: chain
End: 963
•
•
•
•
•
Publication
10556033 | -
First Author: Katan-Khaykovich Y
Year: 1999
Journal: J Mol Biol
Title: The dimerization/repression domain of RFX1 is related to a conserved region of its yeast homologues Crt1 and Sak1: a new function for an ancient motif.
Volume: 294
Issue: 1
Pages: 121-37
•
•
•
•
•
Protein
P48379
Organism: Mus musculus/domesticus
Length: 717  
Fragment?: false
•
•
•
•
•
Protein
P48381
Organism: Mus musculus/domesticus
Length: 749  
Fragment?: false
•
•
•
•
•
Protein
Q8BYY2
Organism: Mus musculus/domesticus
Length: 695  
Fragment?: true
•
•
•
•
•
Protein
G3UWP0
Organism: Mus musculus/domesticus
Length: 458  
Fragment?: false
•
•
•
•
•
Protein
G5E890
Organism: Mus musculus/domesticus
Length: 724  
Fragment?: false
•
•
•
•
•
Protein
A0A3B2WBJ0
Organism: Mus musculus/domesticus
Length: 226  
Fragment?: true
•
•
•
•
•
Protein
Q8BJK3
Organism: Mus musculus/domesticus
Length: 963  
Fragment?: false
•
•
•
•
•
Publication
15229132 | -
First Author: Horvath GC
Year: 2004
Journal: Biol Reprod
Title: RFX2 is a potential transcriptional regulatory factor for histone H1t and other genes expressed during the meiotic phase of spermatogenesis.
Volume: 71
Issue: 5
Pages: 1551-9
•
•
•
•
•
Protein
Q3V383
Organism: Mus musculus/domesticus
Length: 245  
Fragment?: false
•
•
•
•
•
Protein
A0A1W2P7F2
Organism: Mus musculus/domesticus
Length: 270  
Fragment?: true
•
•
•
•
•
Protein
Q3TSB6
Organism: Mus musculus/domesticus
Length: 364  
Fragment?: true
•
•
•
•
•
Protein
Q8CB07
Organism: Mus musculus/domesticus
Length: 481  
Fragment?: true
•
•
•
•
•
Publication
18673564 | -
 
First Author: Aftab S
Year: 2008
Journal: BMC Evol Biol
Title: Identification and characterization of novel human tissue-specific RFX transcription factors.
Volume: 8
Pages: 226
•
•
•
•
•
Publication
25497100 | -
First Author: Chandra V
Year: 2014
Journal: Cell Rep
Title: RFX6 regulates insulin secretion by modulating Ca2+ homeostasis in human β cells.
Volume: 9
Issue: 6
Pages: 2206-18
•
•
•
•
•
Protein Domain
IPR039779 | RFX-like
Type: Family
Description: This entry includes Rfx1 from budding yeasts, Sak1 from fission yeasts and RFX1-8 from humans []. They are transcription factors that contain a RFX DNA binding domain and a conserved C-terminal region [].Mutations in the RFX5 gene cause Bare lymphocyte syndrome 2 (BLS2), a severe combined immunodeficiency disease with early onset []. Mutations in the RFX6 gene cause Mitchell-Riley syndrome (MTCHRS), a disorder characterized by neonatal diabetes, hypoplastic or annular pancreas, duodenal and jejunal atresia, and absent gallbladder [, ].
•
•
•
•
•
Publication
36577402 | J:332730
     
First Author: Coffin SL
Year: 2022
Journal: Neuron
Title: Disruption of the ATXN1-CIC complex reveals the role of additional nuclear ATXN1 interactors in spinocerebellar ataxia type 1.
•
•
•
•
•
Publication
15121860 | J:89880
First Author: Bonnafe E
Year: 2004
Journal: Mol Cell Biol
Title: The transcription factor RFX3 directs nodal cilium development and left-right asymmetry specification.
Volume: 24
Issue: 10
Pages: 4417-27
•
•
•
•
•
Publication
10767550 | J:61875
First Author: Durand B
Year: 2000
Journal: Gene
Title: Cloning and characterization of dRFX, the Drosophila member of the RFX family of transcription factors.
Volume: 246
Issue: 1-2
Pages: 285-93
•
•
•
•
•
Publication
12411430 | J:81252
First Author: Nakayama A
Year: 2003
Journal: J Biol Chem
Title: Role for RFX transcription factors in non-neuronal cell-specific inactivation of the microtubule-associated protein MAP1A promoter.
Volume: 278
Issue: 1
Pages: 233-40
•
•
•
•
•
Protein
D3YTK4
Organism: Mus musculus/domesticus
Length: 90  
Fragment?: true
•
•
•
•
•
Protein
D3YZK7
Organism: Mus musculus/domesticus
Length: 105  
Fragment?: true
•
•
•
•
•
Protein
D3YVW1
Organism: Mus musculus/domesticus
Length: 95  
Fragment?: true
•
•
•
•
•
Publication
10825209 | -
First Author: Nekrep N
Year: 2000
Journal: Mol Cell Biol
Title: Mutations in the bare lymphocyte syndrome define critical steps in the assembly of the regulatory factor X complex.
Volume: 20
Issue: 12
Pages: 4455-61
•
•
•
•
•
Protein
Q7TNK1
Organism: Mus musculus/domesticus
Length: 735  
Fragment?: false
•
•
•
•
•
Protein
Q8C7R7
Organism: Mus musculus/domesticus
Length: 927  
Fragment?: false
•
•
•
•
•
Protein
D3YU81
Organism: Mus musculus/domesticus
Length: 596  
Fragment?: false
•
•
•
•
•
Protein
Q3V1T0
Organism: Mus musculus/domesticus
Length: 614  
Fragment?: true
•
•
•
•
•
Protein
Q8C1T6
Organism: Mus musculus/domesticus
Length: 309  
Fragment?: true
•
•
•
•
•
Protein
K4DI79
Organism: Mus musculus/domesticus
Length: 131  
Fragment?: true
•
•
•
•
•
Protein
D5FLC2
Organism: Mus musculus/domesticus
Length: 893  
Fragment?: false
•
•
•
•
•
Protein
F8VPJ6
Organism: Mus musculus/domesticus
Length: 1459  
Fragment?: false
•
•
•
•
•
Protein
Q3TDE2
Organism: Mus musculus/domesticus
Length: 291  
Fragment?: false
•
•
•
•
•
Protein
Q9JL61
Organism: Mus musculus/domesticus
Length: 658  
Fragment?: false
•
•
•
•
•
Protein
D3Z0D4
Organism: Mus musculus/domesticus
Length: 181  
Fragment?: true
•
•
•
•
•
Protein
Q0P5W9
Organism: Mus musculus/domesticus
Length: 570  
Fragment?: false
•
•
•
•
•
Protein
Q6DI69
Organism: Mus musculus/domesticus
Length: 303  
Fragment?: false
•
•
•
•
•
Publication
15489334 | -
First Author: Gerhard DS
Year: 2004
Journal: Genome Res
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
Volume: 14
Issue: 10B
Pages: 2121-7
•
•
•
•
•
Publication
21183079 | J:292518
First Author: Huttlin EL
Year: 2010
Journal: Cell
Title: A tissue-specific atlas of mouse protein phosphorylation and expression.
Volume: 143
Issue: 7
Pages: 1174-89
•
•
•
•
•
Publication
19468303 | -
First Author: Church DM
Year: 2009
Journal: PLoS Biol
Title: Lineage-specific biology revealed by a finished genome assembly of the mouse.
Volume: 7
Issue: 5
Pages: e1000112
•
•
•
•
•




MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

Copyright © 2017 by The Jackson Laboratory. All Rights Reserved

© 2002 - 2017 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom