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Search results 101 to 188 out of 188 for Sf3b1

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Type Details Score
GXD Expression
GXD Expression
 
Probe: MGI:3615958
Assay Type: RNA in situ
Annotation Date: 2006-03-24
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1697427
Pattern: Not Specified
Stage: TS27
Assay Id: MGI:3617602
Age: postnatal day 0
Image: P0
Specimen Label: P0
Detected: true
Specimen Num: 2
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:6191705
Assay Type: RNA in situ
Annotation Date: 2018-07-26
Strength: Strong
Sex: Not Specified
Emaps: EMAPS:1697417
Pattern: Graded
Stage: TS17
Assay Id: MGI:6191712
Age: embryonic day 10.5
Note: Expression is stronger dorsally.
Specimen Label: 5C top
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:3615958
Assay Type: RNA in situ
Annotation Date: 2006-03-24
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1716821
Pattern: Not Specified
Stage: TS21
Assay Id: MGI:3617602
Age: embryonic day 13.5
Image: E13.5
Specimen Label: E13.5
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:3615958
Assay Type: RNA in situ
Annotation Date: 2006-03-24
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1716827
Pattern: Not Specified
Stage: TS27
Assay Id: MGI:3617602
Age: postnatal day 0
Image: P0
Specimen Label: P0
Detected: true
Specimen Num: 2
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:3615958
Assay Type: RNA in situ
Annotation Date: 2006-03-24
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1753627
Pattern: Not Specified
Stage: TS27
Assay Id: MGI:3617602
Age: postnatal day 0
Image: P0
Specimen Label: P0
Detected: true
Specimen Num: 2
•
•
•
•
•
GXD Expression
GXD Expression
Probe: MGI:3615958
Assay Type: RNA in situ
Annotation Date: 2006-03-24
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1754421
Pattern: Not Specified
Stage: TS21
Assay Id: MGI:3617602
Age: embryonic day 13.5
Image: E13.5
Note: Expression was detected in precortical tissue.
Specimen Label: E13.5
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:3615958
Assay Type: RNA in situ
Annotation Date: 2006-03-24
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1754427
Pattern: Not Specified
Stage: TS27
Assay Id: MGI:3617602
Age: postnatal day 0
Image: P0
Specimen Label: P0
Detected: true
Specimen Num: 2
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:3615958
Assay Type: RNA in situ
Annotation Date: 2006-03-24
Strength: Present
Sex: Not Specified
Emaps: EMAPS:3284527
Pattern: Not Specified
Stage: TS27
Assay Id: MGI:3617602
Age: postnatal day 0
Image: P0
Specimen Label: P0
Detected: true
Specimen Num: 2
•
•
•
•
•
GXD Expression
GXD Expression
   
Probe: MGI:6191705
Assay Type: RNA in situ
Annotation Date: 2018-07-26
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1603917
Pattern: Ubiquitous
Stage: TS17
Assay Id: MGI:6191712
Age: embryonic day 10.5
Specimen Label: 5C top
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:6191705
Assay Type: RNA in situ
Annotation Date: 2018-07-26
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1616417
Pattern: Graded
Stage: TS17
Assay Id: MGI:6191712
Age: embryonic day 10.5
Note: There is a dorsoventral gradient of expression.
Specimen Label: 5C bottom
Detected: true
Specimen Num: 2
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:6191705
Assay Type: RNA in situ
Annotation Date: 2018-07-26
Strength: Strong
Sex: Not Specified
Emaps: EMAPS:1616417
Pattern: Graded
Stage: TS17
Assay Id: MGI:6191712
Age: embryonic day 10.5
Note: Expression is stronger dorsally.
Specimen Label: 5C top
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:3615958
Assay Type: RNA in situ
Annotation Date: 2006-03-24
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1679727
Pattern: Not Specified
Stage: TS27
Assay Id: MGI:3617602
Age: postnatal day 0
Image: P0
Specimen Label: P0
Detected: true
Specimen Num: 2
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:3615958
Assay Type: RNA in situ
Annotation Date: 2006-03-24
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1754027
Pattern: Not Specified
Stage: TS27
Assay Id: MGI:3617602
Age: postnatal day 0
Image: P0
Specimen Label: P0
Detected: true
Specimen Num: 2
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:3615958
Assay Type: RNA in situ
Annotation Date: 2006-03-24
Strength: Present
Sex: Not Specified
Emaps: EMAPS:3280927
Pattern: Not Specified
Stage: TS27
Assay Id: MGI:3617602
Age: postnatal day 0
Image: P0
Specimen Label: P0
Detected: true
Specimen Num: 2
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:3615958
Assay Type: RNA in situ
Annotation Date: 2006-03-24
Strength: Present
Sex: Not Specified
Emaps: EMAPS:3267921
Pattern: Not Specified
Stage: TS21
Assay Id: MGI:3617602
Age: embryonic day 13.5
Image: E13.5
Specimen Label: E13.5
Detected: true
Specimen Num: 1
•
•
•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:3615958
Assay Type: RNA in situ
Annotation Date: 2006-03-24
Strength: Ambiguous
Sex: Not Specified
Emaps: EMAPS:1757721
Pattern: Not Specified
Stage: TS21
Assay Id: MGI:3617602
Age: embryonic day 13.5
Image: E13.5
Note: Authors indicate that there was either ubiquitous or background expression.
Specimen Label: E13.5
Specimen Num: 1
•
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•
•
•
GXD Expression
GXD Expression
 
Probe: MGI:3615958
Assay Type: RNA in situ
Annotation Date: 2006-03-24
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1757727
Pattern: Not Specified
Stage: TS27
Assay Id: MGI:3617602
Age: postnatal day 0
Image: P0
Specimen Label: P0
Detected: true
Specimen Num: 2
•
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Publication
20153721 | J:158823
First Author: Eto K
Year: 2010
Journal: Biochem Biophys Res Commun
Title: Phosphorylated SAP155, the spliceosomal component, is localized to chromatin in postnatal mouse testes.
Volume: 393
Issue: 4
Pages: 577-81
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Protein
A0JLN0
Organism: Mus musculus/domesticus
Length: 496  
Fragment?: true
•
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•
Publication
33846634 | J:320794
First Author: Inoue D
Year: 2021
Journal: Nat Genet
Title: Minor intron retention drives clonal hematopoietic disorders and diverse cancer predisposition.
Volume: 53
Issue: 5
Pages: 707-718
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Publication
7654366 | J:26127
First Author: Babalola GO
Year: 1995
Journal: Mol Reprod Dev
Title: Modulation of gene expression in the preimplantation mouse embryo by TGF-alpha and TGF-beta.
Volume: 41
Issue: 2
Pages: 133-9
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Publication
35074918 | J:323645
 
First Author: Zhou J
Year: 2022
Journal: Proc Natl Acad Sci U S A
Title: Disruption of MeCP2-TCF20 complex underlies distinct neurodevelopmental disorders.
Volume: 119
Issue: 4
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Publication
18559850 | J:137212
First Author: Pessa HK
Year: 2008
Journal: Proc Natl Acad Sci U S A
Title: Minor spliceosome components are predominantly localized in the nucleus.
Volume: 105
Issue: 25
Pages: 8655-60
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Publication
12769854 | J:320057
First Author: Fan HY
Year: 2003
Journal: Mol Cell
Title: Distinct strategies to make nucleosomal DNA accessible.
Volume: 11
Issue: 5
Pages: 1311-22
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Publication
23555303 | J:319968
First Author: Sarshad A
Year: 2013
Journal: PLoS Genet
Title: Nuclear myosin 1c facilitates the chromatin modifications required to activate rRNA gene transcription and cell cycle progression.
Volume: 9
Issue: 3
Pages: e1003397
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Publication
26044184 | J:319696
 
First Author: Almuzzaini B
Year: 2015
Journal: BMC Biol
Title: Nuclear myosin 1 contributes to a chromatin landscape compatible with RNA polymerase II transcription activation.
Volume: 13
Pages: 35
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Publication
31794640 | J:290444
First Author: Li J
Year: 2020
Journal: Cell Prolif
Title: Rbm14 maintains the integrity of genomic DNA during early mouse embryogenesis via mediating alternative splicing.
Volume: 53
Issue: 1
Pages: e12724
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Publication
22937132 | J:191676
First Author: Manceau V
Year: 2012
Journal: PLoS One
Title: The protein kinase KIS impacts gene expression during development and fear conditioning in adult mice.
Volume: 7
Issue: 8
Pages: e43946
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Publication
33239785 | J:299518
First Author: Markiewicz-Potoczny M
Year: 2021
Journal: Nature
Title: TRF2-mediated telomere protection is dispensable in pluripotent stem cells.
Volume: 589
Issue: 7840
Pages: 110-115
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Publication
29617656 | J:263646
First Author: Horiuchi K
Year: 2018
Journal: Cell Rep
Title: Impaired Spermatogenesis, Muscle, and Erythrocyte Function in U12 Intron Splicing-Defective Zrsr1 Mutant Mice.
Volume: 23
Issue: 1
Pages: 143-155
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Publication
37167859 | J:338694
 
First Author: Kumar S
Year: 2023
Journal: Differentiation
Title: Sf3b4 regulates chromatin remodeler splicing and Hox expression.
Volume: 131
Pages: 59-73
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Publication
33230114 | J:299860
First Author: Jin L
Year: 2020
Journal: Nat Commun
Title: STRAP regulates alternative splicing fidelity during lineage commitment of mouse embryonic stem cells.
Volume: 11
Issue: 1
Pages: 5941
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Publication
27869233 | J:244597
 
First Author: Cui W
Year: 2016
Journal: Sci Rep
Title: Towards Functional Annotation of the Preimplantation Transcriptome: An RNAi Screen in Mammalian Embryos.
Volume: 6
Pages: 37396
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Publication
11217851 | J:65060
First Author: Kawai J
Year: 2001
Journal: Nature
Title: Functional annotation of a full-length mouse cDNA collection.
Volume: 409
Issue: 6821
Pages: 685-90
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Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
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Publication
16033648 | J:103446
 
First Author: McKee AE
Year: 2005
Journal: BMC Dev Biol
Title: A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain.
Volume: 5
Pages: 14
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Publication
- | J:342607
       
First Author: Birgit Meldal and Sandra Orchard (1). (1) European Bioinformatics Institute (EBI), Hinxton, Cambridgeshire, United Kingdom
Year: 2023
Title: Manual transfer of experimentally-verified manual GO annotation data to homologous complexes by curator judgment of sequence, composition and function similarity
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Publication
- | J:68100
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2001
Title: RIKEN Data Curation in Mouse Genome Informatics
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Publication
12520002 | J:91812
First Author: Stryke D
Year: 2003
Journal: Nucleic Acids Res
Title: BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.
Volume: 31
Issue: 1
Pages: 278-81
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Publication
18799693 | J:142754
First Author: Hansen GM
Year: 2008
Journal: Genome Res
Title: Large-scale gene trapping in C57BL/6N mouse embryonic stem cells.
Volume: 18
Issue: 10
Pages: 1670-9
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Publication
- | J:157065
     
First Author: Helmholtz Zentrum Muenchen GmbH
Year: 2010
Journal: MGI Direct Data Submission
Title: Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu)
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Publication
- | J:342604
       
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
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Publication
- | J:72247
       
First Author: DDB, FB, MGI, GOA, ZFIN curators
Year: 2001
Title: Gene Ontology annotation through association of InterPro records with GO terms
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Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
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Publication
- | J:23000
       
First Author: MGD Nomenclature Committee
Year: 1995
Title: Nomenclature Committee Use
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Publication
14610273 | J:86696
First Author: Zambrowicz BP
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
Volume: 100
Issue: 24
Pages: 14109-14
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Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
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Publication
- | J:141210
     
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
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Publication
- | J:326541
       
First Author: Cyagen Biosciences Inc.
Year: 2022
Title: Cyagen Biosciences Website.
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Publication
- | J:342587
       
First Author: AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators
Year: 2011
Title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
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Publication
- | J:68900
     
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
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Publication
- | J:164563
       
First Author: The Gene Ontology Consortium
Year: 2010
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
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Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
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Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
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Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:57747
     
First Author: MGI Genome Annotation Group and UniGene Staff
Year: 2015
Journal: Database Download
Title: MGI-UniGene Interconnection Effort
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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UniProt Feature
UniProt Feature
Begin: 988
Description: Interaction with SF3B1
Type: site
End: 988
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UniProt Feature
UniProt Feature
Begin: 1171
Description: Interaction with SF3B1
Type: site
End: 1171
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Protein
Q3UIB4
Organism: Mus musculus/domesticus
Length: 497  
Fragment?: true
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Protein
Q3US00
Organism: Mus musculus/domesticus
Length: 781  
Fragment?: true
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Protein Coding Gene
MGI:2441856 | Sf3b2
Type: protein_coding_gene
Organism: mouse, laboratory
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Publication
10688664 | -
First Author: Pauling MH
Year: 2000
Journal: Mol Cell Biol
Title: Functional Cus1p is found with Hsh155p in a multiprotein splicing factor associated with U2 snRNA.
Volume: 20
Issue: 6
Pages: 2176-85
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Publication
9837997 | -
First Author: Habara Y
Year: 1998
Journal: Nucleic Acids Res
Title: The fission yeast prp10(+) gene involved in pre-mRNA splicing encodes a homologue of highly conserved splicing factor, SAP155.
Volume: 26
Issue: 24
Pages: 5662-9
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Publication
11500380 | -
First Author: Will CL
Year: 2001
Journal: EMBO J
Title: A novel U2 and U11/U12 snRNP protein that associates with the pre-mRNA branch site.
Volume: 20
Issue: 16
Pages: 4536-46
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Protein Domain
IPR038737 | SF3b_su1-like
Type: Family
Description: This entry includes animal splicing factor 3B subunit 1 (SF3B1, also known as SAP 155) and its homologues such as Hsh155 from budding yeasts []and Prp10 from fission yeasts []. SF3B1 is a component of the splicing factor SF3B complex, which is important for anchoring the spliceosome to precursor mRNA. SF3B1 binds to pre-mRNA on both sides of the intron branch site region []. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly [].
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Publication
16432215 | -
First Author: Schellenberg MJ
Year: 2006
Journal: Proc Natl Acad Sci U S A
Title: Crystal structure of a core spliceosomal protein interface.
Volume: 103
Issue: 5
Pages: 1266-71
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Publication
23512658 | J:195288
First Author: Wang Q
Year: 2013
Journal: Genes Dev
Title: PQBP1, a factor linked to intellectual disability, affects alternative splicing associated with neurite outgrowth.
Volume: 27
Issue: 6
Pages: 615-26
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Protein
Q8C839
Organism: Mus musculus/domesticus
Length: 256  
Fragment?: false
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Publication
37024683 | J:355687
First Author: Ramabadran R
Year: 2023
Journal: Nat Cell Biol
Title: DNMT3A-coordinated splicing governs the stem state switch towards differentiation in embryonic and haematopoietic stem cells.
Volume: 25
Issue: 4
Pages: 528-539
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Publication
28167288 | J:274486
 
First Author: Inokura K
Year: 2017
Journal: Exp Hematol
Title: Impact of TET2 deficiency on iron metabolism in erythroblasts.
Volume: 49
Pages: 56-67.e5
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Protein
Q99NB9
Organism: Mus musculus/domesticus
Length: 1304  
Fragment?: false
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Protein
G5E866
Organism: Mus musculus/domesticus
Length: 1304  
Fragment?: false
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Publication
11042159 | J:68323
First Author: Carninci P
Year: 2000
Journal: Genome Res
Title: Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes.
Volume: 10
Issue: 10
Pages: 1617-30
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Publication
10349636 | J:80645
 
First Author: Carninci P
Year: 1999
Journal: Methods Enzymol
Title: High-efficiency full-length cDNA cloning.
Volume: 303
Pages: 19-44
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Publication
11076861 | J:68324
First Author: Shibata K
Year: 2000
Journal: Genome Res
Title: RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer.
Volume: 10
Issue: 11
Pages: 1757-71
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Publication
16141073 | -
First Author: Katayama S
Year: 2005
Journal: Science
Title: Antisense transcription in the mammalian transcriptome.
Volume: 309
Issue: 5740
Pages: 1564-6
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Publication
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First Author: Gerhard DS
Year: 2004
Journal: Genome Res
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
Volume: 14
Issue: 10B
Pages: 2121-7
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MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

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