| Type |
Details |
Score |
| GXD Expression |
| Probe: |
MGI:3615958 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2006-03-24 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1697427 |
| Pattern: |
Not Specified |
| Stage: |
TS27 |
| Assay Id: |
MGI:3617602 |
| Age: |
postnatal day 0 |
| Image: |
P0 |
|
| Specimen Label: |
P0 |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:6191705 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2018-07-26 |
| Strength: |
Strong |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1697417 |
| Pattern: |
Graded |
| Stage: |
TS17 |
| Assay Id: |
MGI:6191712 |
| Age: |
embryonic day 10.5 |
|
| Note: |
Expression is stronger dorsally. |
| Specimen Label: |
5C top |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:3615958 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2006-03-24 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1716821 |
| Pattern: |
Not Specified |
| Stage: |
TS21 |
| Assay Id: |
MGI:3617602 |
| Age: |
embryonic day 13.5 |
| Image: |
E13.5 |
|
| Specimen Label: |
E13.5 |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:3615958 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2006-03-24 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1716827 |
| Pattern: |
Not Specified |
| Stage: |
TS27 |
| Assay Id: |
MGI:3617602 |
| Age: |
postnatal day 0 |
| Image: |
P0 |
|
| Specimen Label: |
P0 |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:3615958 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2006-03-24 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1753627 |
| Pattern: |
Not Specified |
| Stage: |
TS27 |
| Assay Id: |
MGI:3617602 |
| Age: |
postnatal day 0 |
| Image: |
P0 |
|
| Specimen Label: |
P0 |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:3615958 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2006-03-24 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1754421 |
| Pattern: |
Not Specified |
| Stage: |
TS21 |
| Assay Id: |
MGI:3617602 |
| Age: |
embryonic day 13.5 |
| Image: |
E13.5 |
| Note: |
Expression was detected in precortical tissue. |
| Specimen Label: |
E13.5 |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:3615958 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2006-03-24 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1754427 |
| Pattern: |
Not Specified |
| Stage: |
TS27 |
| Assay Id: |
MGI:3617602 |
| Age: |
postnatal day 0 |
| Image: |
P0 |
|
| Specimen Label: |
P0 |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:3615958 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2006-03-24 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:3284527 |
| Pattern: |
Not Specified |
| Stage: |
TS27 |
| Assay Id: |
MGI:3617602 |
| Age: |
postnatal day 0 |
| Image: |
P0 |
|
| Specimen Label: |
P0 |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:6191705 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2018-07-26 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1603917 |
| Pattern: |
Ubiquitous |
| Stage: |
TS17 |
| Assay Id: |
MGI:6191712 |
| Age: |
embryonic day 10.5 |
|
|
| Specimen Label: |
5C top |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:6191705 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2018-07-26 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1616417 |
| Pattern: |
Graded |
| Stage: |
TS17 |
| Assay Id: |
MGI:6191712 |
| Age: |
embryonic day 10.5 |
|
| Note: |
There is a dorsoventral gradient of expression. |
| Specimen Label: |
5C bottom |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:6191705 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2018-07-26 |
| Strength: |
Strong |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1616417 |
| Pattern: |
Graded |
| Stage: |
TS17 |
| Assay Id: |
MGI:6191712 |
| Age: |
embryonic day 10.5 |
|
| Note: |
Expression is stronger dorsally. |
| Specimen Label: |
5C top |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:3615958 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2006-03-24 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1679727 |
| Pattern: |
Not Specified |
| Stage: |
TS27 |
| Assay Id: |
MGI:3617602 |
| Age: |
postnatal day 0 |
| Image: |
P0 |
|
| Specimen Label: |
P0 |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:3615958 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2006-03-24 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1754027 |
| Pattern: |
Not Specified |
| Stage: |
TS27 |
| Assay Id: |
MGI:3617602 |
| Age: |
postnatal day 0 |
| Image: |
P0 |
|
| Specimen Label: |
P0 |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:3615958 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2006-03-24 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:3280927 |
| Pattern: |
Not Specified |
| Stage: |
TS27 |
| Assay Id: |
MGI:3617602 |
| Age: |
postnatal day 0 |
| Image: |
P0 |
|
| Specimen Label: |
P0 |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:3615958 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2006-03-24 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:3267921 |
| Pattern: |
Not Specified |
| Stage: |
TS21 |
| Assay Id: |
MGI:3617602 |
| Age: |
embryonic day 13.5 |
| Image: |
E13.5 |
|
| Specimen Label: |
E13.5 |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:3615958 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2006-03-24 |
| Strength: |
Ambiguous |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1757721 |
| Pattern: |
Not Specified |
| Stage: |
TS21 |
| Assay Id: |
MGI:3617602 |
| Age: |
embryonic day 13.5 |
| Image: |
E13.5 |
| Note: |
Authors indicate that there was either ubiquitous or background expression. |
| Specimen Label: |
E13.5 |
|
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:3615958 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2006-03-24 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1757727 |
| Pattern: |
Not Specified |
| Stage: |
TS27 |
| Assay Id: |
MGI:3617602 |
| Age: |
postnatal day 0 |
| Image: |
P0 |
|
| Specimen Label: |
P0 |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Eto K |
| Year: |
2010 |
| Journal: |
Biochem Biophys Res Commun |
| Title: |
Phosphorylated SAP155, the spliceosomal component, is localized to chromatin in postnatal mouse testes. |
| Volume: |
393 |
| Issue: |
4 |
| Pages: |
577-81 |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
496
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Publication |
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Inoue D |
| Year: |
2021 |
| Journal: |
Nat Genet |
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Minor intron retention drives clonal hematopoietic disorders and diverse cancer predisposition. |
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•
•
•
•
•
|
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Babalola GO |
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1995 |
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Mol Reprod Dev |
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Modulation of gene expression in the preimplantation mouse embryo by TGF-alpha and TGF-beta. |
| Volume: |
41 |
| Issue: |
2 |
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133-9 |
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•
•
•
•
•
|
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•
•
•
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Proc Natl Acad Sci U S A |
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Mouse Genome Database and National Center for Biotechnology Information |
| Year: |
2000 |
| Journal: |
Database Release |
| Title: |
Entrez Gene Load |
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|
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•
•
•
•
•
|
| Publication |
| First Author: |
Allen Institute for Brain Science |
| Year: |
2004 |
| Journal: |
Allen Institute |
| Title: |
Allen Brain Atlas: mouse riboprobes |
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|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2009 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
| Year: |
2010 |
| Journal: |
Database Download |
| Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Group |
| Year: |
2003 |
| Journal: |
Database Procedure |
| Title: |
Automatic Encodes (AutoE) Reference |
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|
•
•
•
•
•
|
| Publication |
| First Author: |
Bairoch A |
| Year: |
1999 |
| Journal: |
Database Release |
| Title: |
SWISS-PROT Annotated protein sequence database |
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|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
|
| Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics |
| Year: |
2010 |
| Journal: |
Database Release |
| Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
|
| Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2009 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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|
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•
•
•
•
•
|
| UniProt Feature |
| Begin: |
988 |
| Description: |
Interaction with SF3B1 |
| Type: |
site |
| End: |
988 |
|
•
•
•
•
•
|
| UniProt Feature |
| Begin: |
1171 |
| Description: |
Interaction with SF3B1 |
| Type: |
site |
| End: |
1171 |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
497
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
781
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Pauling MH |
| Year: |
2000 |
| Journal: |
Mol Cell Biol |
| Title: |
Functional Cus1p is found with Hsh155p in a multiprotein splicing factor associated with U2 snRNA. |
| Volume: |
20 |
| Issue: |
6 |
| Pages: |
2176-85 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Habara Y |
| Year: |
1998 |
| Journal: |
Nucleic Acids Res |
| Title: |
The fission yeast prp10(+) gene involved in pre-mRNA splicing encodes a homologue of highly conserved splicing factor, SAP155. |
| Volume: |
26 |
| Issue: |
24 |
| Pages: |
5662-9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Will CL |
| Year: |
2001 |
| Journal: |
EMBO J |
| Title: |
A novel U2 and U11/U12 snRNP protein that associates with the pre-mRNA branch site. |
| Volume: |
20 |
| Issue: |
16 |
| Pages: |
4536-46 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
This entry includes animal splicing factor 3B subunit 1 (SF3B1, also known as SAP 155) and its homologues such as Hsh155 from budding yeasts []and Prp10 from fission yeasts []. SF3B1 is a component of the splicing factor SF3B complex, which is important for anchoring the spliceosome to precursor mRNA. SF3B1 binds to pre-mRNA on both sides of the intron branch site region []. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly []. |
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•
•
•
•
•
|
| Publication |
| First Author: |
Schellenberg MJ |
| Year: |
2006 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Crystal structure of a core spliceosomal protein interface. |
| Volume: |
103 |
| Issue: |
5 |
| Pages: |
1266-71 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Wang Q |
| Year: |
2013 |
| Journal: |
Genes Dev |
| Title: |
PQBP1, a factor linked to intellectual disability, affects alternative splicing associated with neurite outgrowth. |
| Volume: |
27 |
| Issue: |
6 |
| Pages: |
615-26 |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
256
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ramabadran R |
| Year: |
2023 |
| Journal: |
Nat Cell Biol |
| Title: |
DNMT3A-coordinated splicing governs the stem state switch towards differentiation in embryonic and haematopoietic stem cells. |
| Volume: |
25 |
| Issue: |
4 |
| Pages: |
528-539 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Inokura K |
| Year: |
2017 |
| Journal: |
Exp Hematol |
| Title: |
Impact of TET2 deficiency on iron metabolism in erythroblasts. |
| Volume: |
49 |
|
| Pages: |
56-67.e5 |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
1304
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
1304
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Carninci P |
| Year: |
2000 |
| Journal: |
Genome Res |
| Title: |
Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. |
| Volume: |
10 |
| Issue: |
10 |
| Pages: |
1617-30 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Carninci P |
| Year: |
1999 |
| Journal: |
Methods Enzymol |
| Title: |
High-efficiency full-length cDNA cloning. |
| Volume: |
303 |
|
| Pages: |
19-44 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Shibata K |
| Year: |
2000 |
| Journal: |
Genome Res |
| Title: |
RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. |
| Volume: |
10 |
| Issue: |
11 |
| Pages: |
1757-71 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Katayama S |
| Year: |
2005 |
| Journal: |
Science |
| Title: |
Antisense transcription in the mammalian transcriptome. |
| Volume: |
309 |
| Issue: |
5740 |
| Pages: |
1564-6 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Gerhard DS |
| Year: |
2004 |
| Journal: |
Genome Res |
| Title: |
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |
| Volume: |
14 |
| Issue: |
10B |
| Pages: |
2121-7 |
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•
•
•
•
•
|